path: root/cad/tests/PAM_test_structures/3way_4way_junctions/60bp_PAM3_3way_junction_poor.mmp

mmpformat 080327 required; 080412 preferred
kelvin 300
group (View Data)
info opengroup open = True
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csys (LastView) (1.000000, 0.000000, 0.000000, 0.000000) (111.277047) (-20.608337, -9.986425, 0.000000) (1.000000)
egroup (View Data)
group (60bp_PAM3_3way_junction)
info opengroup open = True
group (DnaGroup1) DnaGroup
info opengroup open = True
group (DnaSegment1) DnaSegment
info opengroup open = False
forward_ref (96570384) # DnaSegmentMarker (DnaMarker1)
mol (DnaAxisChunk5) def
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DnaSegmentMarker (DnaMarker1) (127, 127, 127) 1 2
info leaf forwarded = 96570384
egroup (DnaSegment1)
group (DnaStrand1) DnaStrand
info opengroup open = True
forward_ref (97631488) # DnaStrandMarker (DnaMarker2)
mol (DnaStrandChunk7) def
atom 23 (301) (15426, 21987, 0) def
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bond_direction 40 41
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bond_direction 41 42
atom 43 (0) (67416, 107809, -3529) def
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bond_direction 42 43
info chunk color = 153 0 51
mol (DnaStrandChunk9) def
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bond_direction 44 45
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bond_direction 46 47
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bond_direction 50 51
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bond_direction 56 57
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bond_direction 57 58
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bond_direction 58 59
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bond_direction 59 60
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bond_direction 60 61
atom 62 (301) (3791, 1775, -8269) def
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bond_direction 61 62
atom 63 (301) (6971, 6123, -5110) def
bond1 20 62 23
bond_direction 62 63
bond_direction 63 23
atom 64 (0) (-85371, 15001, -2557) def
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bond_direction 64 44
info chunk color = 153 0 51
DnaStrandMarker (DnaMarker2) (127, 127, 127) 44 45
info leaf forwarded = 97631488
egroup (DnaStrand1)
group (DnaStrand2) DnaStrand
info opengroup open = True
forward_ref (97654424) # DnaStrandMarker (DnaMarker3)
mol (DnaStrandChunk10) def
atom 65 (301) (-83780, -456, 6361) def
bond1 1
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bond_direction 69 68
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bond_direction 70 69
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bond_direction 71 70
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bond_direction 74 73
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bond_direction 75 74
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bond_direction 76 75
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bond_direction 77 76
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bond_direction 78 77
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bond_direction 79 78
atom 80 (301) (-11601, 20628, -6359) def
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bond_direction 80 79
atom 81 (301) (-2567, 7625, -1658) def
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bond_direction 81 80
atom 82 (301) (612, 6970, 3675) def
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bond_direction 82 81
atom 83 (301) (3791, 3304, 7606) def
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bond_direction 83 82
atom 84 (301) (6971, -1971, 8632) def
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bond_direction 84 83
atom 85 (0) (-85371, 847, 8713) def
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bond_direction 65 85
info chunk color = 0 0 153
DnaStrandMarker (DnaMarker3) (127, 127, 127) 65 66
info leaf forwarded = 97654424
mol (DnaStrandChunk11) def
atom 86 (301) (71314, -61023, 8632) def
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atom 88 (301) (74097, -50408, 3675) def
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bond_direction 87 88
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bond_direction 88 89
atom 90 (301) (68521, -46780, -6359) def
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bond_direction 89 90
atom 91 (301) (62744, -47463, -8630) def
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bond_direction 90 91
atom 92 (301) (56656, -48407, -7604) def
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atom 93 (301) (51804, -48317, -3673) def
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atom 94 (301) (49263, -46297, 1660) def
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atom 95 (301) (48959, -37157, 6361) def
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atom 96 (301) (50658, -31593, 8632) def
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atom 97 (301) (49757, -22066, 7606) def
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atom 98 (301) (46825, -15158, 3675) def
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bond_direction 97 98
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atom 100 (301) (41249, -11529, -6359) def
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bond_direction 99 100
atom 101 (301) (35472, -12213, -8630) def
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bond_direction 100 101
atom 102 (301) (29384, -13156, -7604) def
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atom 103 (301) (24532, -13067, -3673) def
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bond_direction 102 103
atom 104 (301) (21991, -11046, 1660) def
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bond_direction 103 104
atom 105 (301) (21952, -6935, 6361) def
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bond_direction 105 84
bond_direction 104 105
atom 106 (0) (70309, -63938, 9145) def
bond1 86
bond_direction 106 86
info chunk color = 0 0 153
egroup (DnaStrand2)
group (DnaSegment2) DnaSegment
info opengroup open = False
forward_ref (99507136) # DnaSegmentMarker (DnaMarker4)
mol (DnaAxisChunk4) def
atom 107 (300) (22559, 17012, 0) def
bond1 23
atom 108 (300) (24378, 19620, 0) def
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atom 109 (300) (26198, 22228, 0) def
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atom 111 (300) (29836, 27445, 0) def
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atom 112 (300) (30067, 38257, 0) def
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atom 114 (300) (33706, 43473, 0) def
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atom 115 (300) (35525, 46081, 0) def
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atom 118 (300) (48128, 53376, 0) def
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atom 127 (0) (21649, 15708, 0) def
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker4) (127, 127, 127) 107 108
info leaf forwarded = 99507136
egroup (DnaSegment2)
group (DnaStrand4) DnaStrand
info opengroup open = True
forward_ref (99715872) # DnaStrandMarker (DnaMarker6)
mol (DnaStrandChunk8) def
atom 129 (301) (27424, 13619, 6361) def
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atom 148 (301) (74930, 100628, 8632) def
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bond_direction 148 147
atom 149 (0) (78006, 100422, 9145) def
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bond_direction 149 148
info chunk color = 0 255 0
DnaStrandMarker (DnaMarker6) (0, 255, 0) 129 130
info leaf forwarded = 99715872
mol (DnaStrandChunk12) def
atom 150 (301) (77526, -55831, -5110) def
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atom 152 (301) (65986, -57186, -8269) def
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atom 153 (301) (60610, -57535, -5110) def
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atom 155 (301) (56532, -52654, 5112) def
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bond_direction 162 161
atom 163 (301) (33339, -22284, -5110) def
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atom 164 (301) (30025, -20909, 0) def
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bond_direction 164 163
atom 165 (301) (29260, -17404, 5112) def
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bond_direction 165 164
atom 166 (301) (30558, -12176, 8271) def
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atom 168 (301) (31824, -795, 5112) def
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bond_direction 129 169
bond_direction 169 168
atom 170 (0) (80216, -55657, -3529) def
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bond_direction 150 170
info chunk color = 0 255 0
egroup (DnaStrand4)
group (DnaSegment3) DnaSegment
info opengroup open = False
forward_ref (99748720) # DnaSegmentMarker (DnaMarker7)
mol (DnaAxisChunk6) def
atom 171 (300) (72127, -60343, 0) def
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atom 185 (300) (36698, -15333, 0) def
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atom 186 (300) (34659, -12892, 0) def
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atom 188 (300) (30581, -8012, 0) def
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atom 189 (300) (28542, -5572, 0) def
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atom 190 (300) (24386, -2867, 0) def
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atom 191 (0) (23366, -1647, 0) def
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atom 192 (0) (73147, -61564, 0) def
bond1 171
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker7) (127, 127, 127) 190 189
info leaf forwarded = 99748720
egroup (DnaSegment3)
egroup (DnaGroup1)
egroup (60bp_PAM3_3way_junction)
end1
group (Clipboard)
info opengroup open = False
egroup (Clipboard)
end molecular machine part 60bp_PAM3_3way_junction