summaryrefslogtreecommitdiff
path: root/cad/tests/PAM_test_structures/100bp_long_deformed_circular/100bp_PAM5_circularized_goodstart.mmp
blob: 68c512fb888cc4a13d7e0d2fdc210249a788a465 (plain)
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mmpformat 080327 required; 080412 preferred
kelvin 300
group (View Data)
info opengroup open = True
csys (HomeView) (1.000000, 0.000000, 0.000000, 0.000000) (10.000000) (0.000000, 0.000000, 0.000000) (1.000000)
csys (LastView) (0.998201, 0.059881, 0.000438, -0.002907) (94.180879) (-47.153914, -22.043331, -4.761150) (1.000000)
egroup (View Data)
group (100bp_PAM3_circularized_goodstart)
info opengroup open = True
group (DnaGroup1) DnaGroup
info opengroup open = True
group (DnaSegment1) DnaSegment
info opengroup open = False
forward_ref (781692680) # DnaSegmentMarker (DnaMarker4)
mol (DnaAxisChunk2) def
atom 1 (208) (9142, -59552, 7557) def
atom 2 (208) (8474, -56187, 10366) def
bond1 1
atom 3 (208) (9705, -52836, 12992) def
bond1 2
atom 4 (208) (12367, -49562, 14354) def
bond1 3
atom 5 (208) (15441, -46406, 13859) def
bond1 4
atom 6 (208) (17753, -43364, 11616) def
bond1 5
atom 7 (208) (18422, -40379, 8406) def
bond1 6
atom 8 (208) (17190, -37384, 5379) def
bond1 7
atom 9 (208) (14529, -34310, 3615) def
bond1 8
atom 10 (208) (11455, -31117, 3709) def
bond1 9
atom 11 (208) (9142, -27813, 5551) def
bond1 10
atom 12 (208) (8474, -24451, 8360) def
bond1 11
atom 13 (208) (9706, -21098, 10986) def
bond1 12
atom 14 (208) (12367, -17825, 12348) def
bond1 13
atom 15 (208) (15441, -14671, 11852) def
bond1 14
atom 16 (208) (17753, -11626, 9610) def
bond1 15
atom 17 (208) (18422, -8642, 6401) def
bond1 16
atom 18 (208) (17190, -5648, 3372) def
bond1 17
atom 19 (208) (14529, -2573, 1608) def
bond1 18
atom 20 (208) (11455, 618, 1703) def
bond1 19
atom 21 (208) (9142, 3919, 3544) def
bond1 20
atom 22 (208) (8474, 7284, 6354) def
bond1 21
atom 23 (208) (9705, 10637, 8979) def
bond1 22
atom 24 (208) (12367, 13908, 10343) def
bond1 23
atom 25 (208) (15441, 17064, 9846) def
bond1 24
atom 26 (208) (17753, 20110, 7603) def
bond1 25
atom 27 (208) (18422, 23092, 4394) def
bond1 26
atom 28 (208) (17190, 26087, 1366) def
bond1 27
atom 29 (208) (14529, 29163, -398) def
bond1 28
atom 30 (208) (11455, 32353, -302) def
bond1 29
atom 31 (208) (9142, 35657, 1538) def
bond1 30
atom 32 (208) (8474, 39021, 4347) def
bond1 31
atom 33 (208) (9706, 42373, 6973) def
bond1 32
atom 34 (208) (12367, 45646, 8336) def
bond1 33
atom 35 (208) (15440, 48802, 7840) def
bond1 34
atom 36 (208) (17753, 51844, 5597) def
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atom 37 (208) (18422, 54829, 2388) def
bond1 36
atom 38 (208) (17189, 57824, -639) def
bond1 37
atom 39 (208) (14530, 60898, -2404) def
bond1 38
atom 40 (208) (11455, 64091, -2309) def
bond1 39
atom 41 (208) (9142, 67395, -467) def
bond1 40
atom 42 (208) (8474, 70757, 2341) def
bond1 41
atom 43 (208) (9705, 74110, 4966) def
bond1 42
atom 44 (208) (12367, 77383, 6330) def
bond1 43
atom 45 (208) (15440, 80537, 5834) def
bond1 44
atom 46 (208) (17753, 83583, 3590) def
bond1 45
atom 47 (208) (18422, 86566, 381) def
bond1 46
atom 48 (208) (17190, 89560, -2645) def
bond1 47
atom 49 (208) (14529, 92635, -4410) def
bond1 48
atom 50 (208) (11464, 96412, -4334) def
bond1 49
atom 51 (0) (9828, 98426, -4293) def
bond1 50
atom 52 (0) (9533, -61521, 5913) def
bond1 1
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker4) (127, 127, 127) 50 49
info leaf forwarded = 781692680
egroup (DnaSegment1)
group (DnaStrand1) DnaStrand
info opengroup open = True
forward_ref (782937264) # DnaStrandMarker (DnaMarker5)
mol (DnaStrandChunk3) def
atom 53 (202) (45240, -60582, 13041) def
atom 54 (201) (12884, -59018, 15982) def
bond1 1 53
bond_direction 53 54
atom 55 (202) (13877, -56492, 19314) def
bond1 54
bond_direction 54 55
atom 56 (201) (16463, -55895, 14987) def
bond1 2 55
bond_direction 55 56
atom 57 (202) (19314, -53448, 17072) def
bond1 56
bond_direction 56 57
atom 58 (201) (18890, -52895, 12044) def
bond1 3 57
bond_direction 57 58
atom 59 (202) (22511, -50580, 12030) def
bond1 58
bond_direction 58 59
atom 60 (201) (19239, -49951, 8200) def
bond1 4 59
bond_direction 59 60
atom 61 (202) (22246, -47773, 6037) def
bond1 60
bond_direction 60 61
atom 62 (201) (17375, -46977, 4848) def
bond1 5 61
bond_direction 61 62
atom 63 (202) (18620, -44886, 1306) def
bond1 62
bond_direction 62 63
atom 64 (201) (14012, -43895, 3191) def
bond1 6 63
bond_direction 63 64
atom 65 (202) (13019, -41808, -431) def
bond1 64
bond_direction 64 65
atom 66 (201) (10433, -40671, 3785) def
bond1 7 65
bond_direction 65 66
atom 67 (202) (7581, -38506, 1409) def
bond1 66
bond_direction 66 67
atom 68 (201) (8005, -37324, 6327) def
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bond_direction 67 68
atom 69 (202) (4385, -35026, 6050) def
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bond_direction 68 69
atom 70 (201) (7657, -33920, 9769) def
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bond_direction 69 70
atom 71 (202) (4650, -31486, 11641) def
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bond_direction 70 71
atom 72 (201) (9521, -30548, 12720) def
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bond_direction 71 72
atom 73 (202) (8276, -28026, 15970) def
bond1 72
bond_direction 72 73
atom 74 (201) (12884, -27282, 13976) def
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bond_direction 73 74
atom 75 (202) (13877, -24756, 17307) def
bond1 74
bond_direction 74 75
atom 76 (201) (16463, -24159, 12980) def
bond1 12 75
bond_direction 75 76
atom 77 (202) (19314, -21711, 15065) def
bond1 76
bond_direction 76 77
atom 78 (201) (18890, -21158, 10037) def
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bond_direction 77 78
atom 79 (202) (22511, -18843, 10023) def
bond1 78
bond_direction 78 79
atom 80 (201) (19239, -18215, 6194) def
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bond_direction 79 80
atom 81 (202) (22246, -16036, 4031) def
bond1 80
bond_direction 80 81
atom 82 (201) (17375, -15240, 2842) def
bond1 15 81
bond_direction 81 82
atom 83 (202) (18620, -13149, -699) def
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bond_direction 82 83
atom 84 (201) (14012, -12159, 1185) def
bond1 16 83
bond_direction 83 84
atom 85 (202) (13019, -10072, -2437) def
bond1 84
bond_direction 84 85
atom 86 (201) (10433, -8934, 1780) def
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bond_direction 85 86
atom 87 (202) (7581, -6769, -596) def
bond1 86
bond_direction 86 87
atom 88 (201) (8005, -5588, 4320) def
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bond_direction 87 88
atom 89 (202) (4385, -3290, 4043) def
bond1 88
bond_direction 88 89
atom 90 (201) (7657, -2184, 7762) def
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bond_direction 89 90
atom 91 (202) (4650, 249, 9634) def
bond1 90
bond_direction 90 91
atom 92 (201) (9521, 1187, 10713) def
bond1 20 91
bond_direction 91 92
atom 93 (202) (8276, 3708, 13963) def
bond1 92
bond_direction 92 93
atom 94 (201) (12884, 4453, 11969) def
bond1 21 93
bond_direction 93 94
atom 95 (202) (13877, 6979, 15301) def
bond1 94
bond_direction 94 95
atom 96 (201) (16463, 7576, 10974) def
bond1 22 95
bond_direction 95 96
atom 97 (202) (19314, 10024, 13059) def
bond1 96
bond_direction 96 97
atom 98 (201) (18890, 10577, 8031) def
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bond_direction 97 98
atom 99 (202) (22511, 12891, 8017) def
bond1 98
bond_direction 98 99
atom 100 (201) (19239, 13520, 4188) def
bond1 24 99
bond_direction 99 100
atom 101 (202) (22246, 15699, 2025) def
bond1 100
bond_direction 100 101
atom 102 (201) (17375, 16495, 836) def
bond1 25 101
bond_direction 101 102
atom 103 (202) (18620, 18587, -2705) def
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mol (DnaStrandChunk6) def
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atom 360 (202) (86181, 86339, -1311) def
bond1 359
bond_direction 360 359
atom 361 (201) (82843, 84028, 98) def
bond1 360
bond_direction 361 360
atom 362 (202) (85334, 83159, 4435) def
bond1 361
bond_direction 362 361
atom 363 (201) (81804, 80848, 3614) def
bond1 362
bond_direction 363 362
atom 364 (202) (81270, 79979, 8586) def
bond1 363
bond_direction 364 363
atom 365 (201) (78897, 77668, 5847) def
bond1 364
bond_direction 365 364
atom 366 (202) (75541, 76799, 9556) def
bond1 365
bond_direction 366 365
atom 367 (201) (75232, 74488, 5946) def
bond1 366
bond_direction 367 366
atom 368 (202) (70338, 73619, 6974) def
bond1 367
bond_direction 368 367
atom 369 (201) (72209, 71308, 3872) def
bond1 368
bond_direction 369 368
atom 370 (202) (67645, 70439, 1827) def
bond1 369
bond_direction 370 369
atom 371 (201) (70983, 68128, 417) def
bond1 370
bond_direction 371 370
atom 372 (202) (68493, 67259, -3919) def
bond1 371
bond_direction 372 371
atom 373 (201) (72022, 64948, -3098) def
bond1 372
bond_direction 373 372
atom 374 (202) (72556, 64079, -8071) def
bond1 373
bond_direction 374 373
atom 375 (201) (74928, 61768, -5332) def
bond1 374
bond_direction 375 374
atom 376 (202) (78284, 60899, -9041) def
bond1 375
bond_direction 376 375
atom 377 (201) (78593, 58588, -5431) def
bond1 376
bond_direction 377 376
atom 378 (202) (83488, 57719, -6459) def
bond1 377
bond_direction 378 377
atom 379 (201) (81617, 55408, -3356) def
bond1 378
bond_direction 379 378
atom 380 (202) (86181, 54539, -1311) def
bond1 379
bond_direction 380 379
atom 381 (201) (82843, 52228, 98) def
bond1 380
bond_direction 381 380
atom 382 (202) (85334, 51359, 4435) def
bond1 381
bond_direction 382 381
atom 383 (201) (81804, 49048, 3614) def
bond1 382
bond_direction 383 382
atom 384 (202) (81270, 48179, 8586) def
bond1 383
bond_direction 384 383
atom 385 (201) (78897, 45868, 5847) def
bond1 384
bond_direction 385 384
atom 386 (202) (75541, 44999, 9556) def
bond1 385
bond_direction 386 385
atom 387 (201) (75232, 42688, 5946) def
bond1 386
bond_direction 387 386
atom 388 (202) (70338, 41819, 6974) def
bond1 387
bond_direction 388 387
atom 389 (201) (72209, 39508, 3872) def
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bond_direction 389 388
atom 390 (202) (67645, 38639, 1827) def
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bond_direction 390 389
atom 391 (201) (70983, 36328, 417) def
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bond_direction 391 390
atom 392 (202) (68493, 35459, -3919) def
bond1 391
bond_direction 392 391
atom 393 (201) (72022, 33148, -3098) def
bond1 392
bond_direction 393 392
atom 394 (202) (72556, 32279, -8071) def
bond1 393
bond_direction 394 393
atom 395 (201) (74928, 29968, -5332) def
bond1 394
bond_direction 395 394
atom 396 (202) (78284, 29099, -9041) def
bond1 395
bond_direction 396 395
atom 397 (201) (78593, 26788, -5431) def
bond1 396
bond_direction 397 396
atom 398 (202) (83488, 25919, -6459) def
bond1 397
bond_direction 398 397
atom 399 (201) (81617, 23608, -3356) def
bond1 398
bond_direction 399 398
atom 400 (202) (86181, 22739, -1311) def
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bond_direction 400 399
atom 401 (201) (82843, 20428, 98) def
bond1 400
bond_direction 401 400
atom 402 (202) (85334, 19559, 4435) def
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atom 403 (201) (81804, 17248, 3614) def
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bond_direction 403 402
atom 404 (202) (81270, 16379, 8586) def
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atom 405 (201) (78897, 14068, 5847) def
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atom 406 (202) (75541, 13199, 9556) def
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atom 408 (202) (70338, 10019, 6974) def
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bond_direction 408 407
atom 409 (201) (72209, 7708, 3872) def
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bond_direction 409 408
atom 410 (202) (67645, 6839, 1827) def
bond1 409
bond_direction 410 409
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bond_direction 411 410
atom 412 (202) (68493, 3659, -3919) def
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atom 413 (201) (72022, 1348, -3098) def
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bond_direction 413 412
atom 414 (202) (72556, 480, -8071) def
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bond1 418
bond_direction 419 418
atom 420 (202) (86181, -9059, -1311) def
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atom 421 (201) (82843, -11370, 98) def
bond1 420
bond_direction 421 420
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atom 423 (201) (81804, -14550, 3614) def
bond1 422
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atom 424 (202) (81270, -15419, 8586) def
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bond_direction 424 423
atom 425 (201) (78897, -17730, 5847) def
bond1 424
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atom 426 (202) (75541, -18599, 9556) def
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bond_direction 427 426
atom 428 (202) (70338, -21779, 6974) def
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bond_direction 428 427
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bond_direction 432 431
atom 433 (201) (72022, -30450, -3098) def
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bond_direction 433 432
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bond_direction 434 433
atom 435 (201) (74928, -33630, -5332) def
bond1 434
bond_direction 435 434
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bond1 435
bond_direction 436 435
atom 437 (201) (78593, -36810, -5431) def
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atom 438 (202) (83488, -37679, -6459) def
bond1 437
bond_direction 438 437
atom 439 (201) (81617, -39990, -3356) def
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bond_direction 439 438
atom 440 (202) (86181, -40859, -1311) def
bond1 439
bond_direction 440 439
atom 441 (201) (82843, -43170, 98) def
bond1 440
bond_direction 441 440
atom 442 (202) (85334, -44039, 4435) def
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bond_direction 442 441
atom 443 (201) (81804, -46350, 3614) def
bond1 442
bond_direction 443 442
atom 444 (202) (81270, -47219, 8586) def
bond1 443
bond_direction 444 443
atom 445 (201) (78897, -49530, 5847) def
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bond_direction 445 444
atom 446 (202) (75541, -50399, 9556) def
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bond_direction 446 445
atom 447 (201) (75232, -52710, 5946) def
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bond_direction 447 446
atom 448 (202) (70338, -53579, 6974) def
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bond_direction 448 447
atom 449 (201) (72209, -55890, 3872) def
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bond_direction 449 448
atom 450 (202) (67645, -56759, 1827) def
bond1 449
bond_direction 450 449
atom 451 (201) (70983, -59070, 417) def
bond1 450
bond_direction 451 450
atom 452 (202) (45075, -60965, 1072) def
bond1 253 451
bond_direction 253 452
bond_direction 452 451
info chunk color = 153 0 51
egroup (DnaStrand2)
group (DnaSegment2) DnaSegment
info opengroup open = False
forward_ref (825217112) # DnaSegmentMarker (DnaMarker7)
mol (DnaAxisChunk3) def
atom 453 (208) (81086, 97051, -2069) def
bond1 353 154
atom 454 (208) (81887, 93568, 736) def
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atom 455 (208) (80655, 90388, 3568) def
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atom 456 (208) (77994, 87208, 5136) def
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atom 457 (208) (74921, 84028, 4840) def
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atom 458 (208) (72608, 80848, 2793) def
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atom 459 (208) (71939, 77668, -221) def
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atom 460 (208) (73171, 74488, -3053) def
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atom 461 (208) (75832, 71308, -4620) def
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atom 462 (208) (78906, 68128, -4324) def
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atom 463 (208) (81218, 64948, -2278) def
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atom 464 (208) (81887, 61768, 736) def
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atom 465 (208) (80655, 58588, 3568) def
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atom 466 (208) (77994, 55408, 5136) def
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atom 467 (208) (74921, 52228, 4840) def
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atom 468 (208) (72608, 49048, 2793) def
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atom 469 (208) (71939, 45868, -221) def
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atom 470 (208) (73171, 42688, -3053) def
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atom 471 (208) (75832, 39508, -4620) def
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atom 472 (208) (78906, 36328, -4324) def
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atom 473 (208) (81218, 33148, -2278) def
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atom 474 (208) (81887, 29968, 736) def
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atom 475 (208) (80655, 26788, 3568) def
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atom 476 (208) (77994, 23608, 5136) def
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atom 477 (208) (74921, 20428, 4840) def
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atom 478 (208) (72608, 17248, 2793) def
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atom 479 (208) (71939, 14068, -221) def
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atom 480 (208) (73171, 10888, -3053) def
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atom 481 (208) (75832, 7708, -4620) def
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atom 482 (208) (78906, 4528, -4324) def
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atom 483 (208) (81218, 1348, -2278) def
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atom 484 (208) (81887, -1830, 736) def
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atom 485 (208) (80655, -5010, 3568) def
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atom 486 (208) (77994, -8190, 5136) def
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atom 487 (208) (74921, -11370, 4840) def
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atom 488 (208) (72608, -14550, 2793) def
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atom 489 (208) (71939, -17730, -221) def
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atom 490 (208) (73171, -20910, -3053) def
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atom 491 (208) (75832, -24090, -4620) def
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atom 492 (208) (78906, -27270, -4324) def
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atom 493 (208) (81218, -30450, -2278) def
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atom 494 (208) (81887, -33630, 736) def
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atom 495 (208) (80655, -36810, 3568) def
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atom 496 (208) (77994, -39990, 5136) def
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atom 497 (208) (74921, -43170, 4840) def
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atom 498 (208) (72608, -46350, 2793) def
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atom 499 (208) (71939, -49530, -221) def
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atom 500 (208) (73171, -52710, -3053) def
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atom 501 (208) (75832, -55890, -4620) def
bond1 449 250 500
atom 502 (208) (78906, -59070, -4324) def
bond1 451 252 501
atom 503 (0) (80705, -60932, -4151) def
bond1 502
atom 504 (0) (80629, 99040, -3672) def
bond1 453
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker7) (127, 127, 127) 502 501
info leaf forwarded = 825217112
egroup (DnaSegment2)
egroup (DnaGroup1)
egroup (100bp_PAM3_circularized_goodstart)
end1
group (Clipboard)
info opengroup open = False
egroup (Clipboard)
end molecular machine part 100bp_PAM3_circularized_goodstart