mmpformat 080327 required; 080412 preferred kelvin 300 group (View Data) info opengroup open = True csys (HomeView) (1.000000, 0.000000, 0.000000, 0.000000) (10.000000) (0.000000, 0.000000, 0.000000) (1.000000) csys (LastView) (0.998201, 0.059881, 0.000438, -0.002907) (94.180879) (-47.153914, -22.043331, -4.761150) (1.000000) egroup (View Data) group (100bp_PAM3_circularized_goodstart) info opengroup open = True group (DnaGroup1) DnaGroup info opengroup open = True group (DnaSegment1) DnaSegment info opengroup open = False forward_ref (781692680) # DnaSegmentMarker (DnaMarker4) mol (DnaAxisChunk2) def atom 1 (208) (9142, -59552, 7557) def atom 2 (208) (8474, -56187, 10366) def bond1 1 atom 3 (208) (9705, -52836, 12992) def bond1 2 atom 4 (208) (12367, -49562, 14354) def bond1 3 atom 5 (208) (15441, -46406, 13859) def bond1 4 atom 6 (208) (17753, -43364, 11616) def bond1 5 atom 7 (208) (18422, -40379, 8406) def bond1 6 atom 8 (208) (17190, -37384, 5379) def bond1 7 atom 9 (208) (14529, -34310, 3615) def bond1 8 atom 10 (208) (11455, -31117, 3709) def bond1 9 atom 11 (208) (9142, -27813, 5551) def bond1 10 atom 12 (208) (8474, -24451, 8360) def bond1 11 atom 13 (208) (9706, -21098, 10986) def bond1 12 atom 14 (208) (12367, -17825, 12348) def bond1 13 atom 15 (208) (15441, -14671, 11852) def bond1 14 atom 16 (208) (17753, -11626, 9610) def bond1 15 atom 17 (208) (18422, -8642, 6401) def bond1 16 atom 18 (208) (17190, -5648, 3372) def bond1 17 atom 19 (208) (14529, -2573, 1608) def bond1 18 atom 20 (208) (11455, 618, 1703) def bond1 19 atom 21 (208) (9142, 3919, 3544) def bond1 20 atom 22 (208) (8474, 7284, 6354) def bond1 21 atom 23 (208) (9705, 10637, 8979) def bond1 22 atom 24 (208) (12367, 13908, 10343) def bond1 23 atom 25 (208) (15441, 17064, 9846) def bond1 24 atom 26 (208) (17753, 20110, 7603) def bond1 25 atom 27 (208) (18422, 23092, 4394) def bond1 26 atom 28 (208) (17190, 26087, 1366) def bond1 27 atom 29 (208) (14529, 29163, -398) def bond1 28 atom 30 (208) (11455, 32353, -302) def bond1 29 atom 31 (208) (9142, 35657, 1538) def bond1 30 atom 32 (208) (8474, 39021, 4347) def bond1 31 atom 33 (208) (9706, 42373, 6973) def bond1 32 atom 34 (208) (12367, 45646, 8336) def bond1 33 atom 35 (208) (15440, 48802, 7840) def bond1 34 atom 36 (208) (17753, 51844, 5597) def bond1 35 atom 37 (208) (18422, 54829, 2388) def bond1 36 atom 38 (208) (17189, 57824, -639) def bond1 37 atom 39 (208) (14530, 60898, -2404) def bond1 38 atom 40 (208) (11455, 64091, -2309) def bond1 39 atom 41 (208) (9142, 67395, -467) def bond1 40 atom 42 (208) (8474, 70757, 2341) def bond1 41 atom 43 (208) (9705, 74110, 4966) def bond1 42 atom 44 (208) (12367, 77383, 6330) def bond1 43 atom 45 (208) (15440, 80537, 5834) def bond1 44 atom 46 (208) (17753, 83583, 3590) def bond1 45 atom 47 (208) (18422, 86566, 381) def bond1 46 atom 48 (208) (17190, 89560, -2645) def bond1 47 atom 49 (208) (14529, 92635, -4410) def bond1 48 atom 50 (208) (11464, 96412, -4334) def bond1 49 atom 51 (0) (9828, 98426, -4293) def bond1 50 atom 52 (0) (9533, -61521, 5913) def bond1 1 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker4) (127, 127, 127) 50 49 info leaf forwarded = 781692680 egroup (DnaSegment1) group (DnaStrand1) DnaStrand info opengroup open = True forward_ref (782937264) # DnaStrandMarker (DnaMarker5) mol (DnaStrandChunk3) def atom 53 (202) (45240, -60582, 13041) def atom 54 (201) (12884, -59018, 15982) def bond1 1 53 bond_direction 53 54 atom 55 (202) (13877, -56492, 19314) def bond1 54 bond_direction 54 55 atom 56 (201) (16463, -55895, 14987) def bond1 2 55 bond_direction 55 56 atom 57 (202) (19314, -53448, 17072) def bond1 56 bond_direction 56 57 atom 58 (201) (18890, -52895, 12044) def bond1 3 57 bond_direction 57 58 atom 59 (202) (22511, -50580, 12030) def bond1 58 bond_direction 58 59 atom 60 (201) (19239, -49951, 8200) def bond1 4 59 bond_direction 59 60 atom 61 (202) (22246, -47773, 6037) def bond1 60 bond_direction 60 61 atom 62 (201) (17375, -46977, 4848) def bond1 5 61 bond_direction 61 62 atom 63 (202) (18620, -44886, 1306) def bond1 62 bond_direction 62 63 atom 64 (201) (14012, -43895, 3191) def bond1 6 63 bond_direction 63 64 atom 65 (202) (13019, -41808, -431) def bond1 64 bond_direction 64 65 atom 66 (201) (10433, -40671, 3785) def bond1 7 65 bond_direction 65 66 atom 67 (202) (7581, -38506, 1409) def bond1 66 bond_direction 66 67 atom 68 (201) (8005, -37324, 6327) def bond1 8 67 bond_direction 67 68 atom 69 (202) (4385, -35026, 6050) def bond1 68 bond_direction 68 69 atom 70 (201) (7657, -33920, 9769) def bond1 9 69 bond_direction 69 70 atom 71 (202) (4650, -31486, 11641) def bond1 70 bond_direction 70 71 atom 72 (201) (9521, -30548, 12720) def bond1 10 71 bond_direction 71 72 atom 73 (202) (8276, -28026, 15970) def bond1 72 bond_direction 72 73 atom 74 (201) (12884, -27282, 13976) def bond1 11 73 bond_direction 73 74 atom 75 (202) (13877, -24756, 17307) def bond1 74 bond_direction 74 75 atom 76 (201) (16463, -24159, 12980) def bond1 12 75 bond_direction 75 76 atom 77 (202) (19314, -21711, 15065) def bond1 76 bond_direction 76 77 atom 78 (201) (18890, -21158, 10037) def bond1 13 77 bond_direction 77 78 atom 79 (202) (22511, -18843, 10023) def bond1 78 bond_direction 78 79 atom 80 (201) (19239, -18215, 6194) def bond1 14 79 bond_direction 79 80 atom 81 (202) (22246, -16036, 4031) def bond1 80 bond_direction 80 81 atom 82 (201) (17375, -15240, 2842) def bond1 15 81 bond_direction 81 82 atom 83 (202) (18620, -13149, -699) def bond1 82 bond_direction 82 83 atom 84 (201) (14012, -12159, 1185) def bond1 16 83 bond_direction 83 84 atom 85 (202) (13019, -10072, -2437) def bond1 84 bond_direction 84 85 atom 86 (201) (10433, -8934, 1780) def bond1 17 85 bond_direction 85 86 atom 87 (202) (7581, -6769, -596) def bond1 86 bond_direction 86 87 atom 88 (201) (8005, -5588, 4320) def bond1 18 87 bond_direction 87 88 atom 89 (202) (4385, -3290, 4043) def bond1 88 bond_direction 88 89 atom 90 (201) (7657, -2184, 7762) def bond1 19 89 bond_direction 89 90 atom 91 (202) (4650, 249, 9634) def bond1 90 bond_direction 90 91 atom 92 (201) (9521, 1187, 10713) def bond1 20 91 bond_direction 91 92 atom 93 (202) (8276, 3708, 13963) def bond1 92 bond_direction 92 93 atom 94 (201) (12884, 4453, 11969) def bond1 21 93 bond_direction 93 94 atom 95 (202) (13877, 6979, 15301) def bond1 94 bond_direction 94 95 atom 96 (201) (16463, 7576, 10974) def bond1 22 95 bond_direction 95 96 atom 97 (202) (19314, 10024, 13059) def bond1 96 bond_direction 96 97 atom 98 (201) (18890, 10577, 8031) def bond1 23 97 bond_direction 97 98 atom 99 (202) (22511, 12891, 8017) def bond1 98 bond_direction 98 99 atom 100 (201) (19239, 13520, 4188) def bond1 24 99 bond_direction 99 100 atom 101 (202) (22246, 15699, 2025) def bond1 100 bond_direction 100 101 atom 102 (201) (17375, 16495, 836) def bond1 25 101 bond_direction 101 102 atom 103 (202) (18620, 18587, -2705) def bond1 102 bond_direction 102 103 atom 104 (201) (14012, 19576, -820) def bond1 26 103 bond_direction 103 104 atom 105 (202) (13018, 21662, -4443) def bond1 104 bond_direction 104 105 atom 106 (201) (10433, 22800, -226) def bond1 27 105 bond_direction 105 106 atom 107 (202) (7581, 24965, -2603) def bond1 106 bond_direction 106 107 atom 108 (201) (8005, 26147, 2314) def bond1 28 107 bond_direction 107 108 atom 109 (202) (4385, 28445, 2036) def bond1 108 bond_direction 108 109 atom 110 (201) (7657, 29551, 5756) def bond1 29 109 bond_direction 109 110 atom 111 (202) (4650, 31985, 7628) def bond1 110 bond_direction 110 111 atom 112 (201) (9521, 32924, 8707) def bond1 30 111 bond_direction 111 112 atom 113 (202) (8276, 35445, 11957) def bond1 112 bond_direction 112 113 atom 114 (201) (12884, 36190, 9963) def bond1 31 113 bond_direction 113 114 atom 115 (202) (13877, 38716, 13294) def bond1 114 bond_direction 114 115 atom 116 (201) (16463, 39313, 8967) def bond1 32 115 bond_direction 115 116 atom 117 (202) (19315, 41761, 11052) def bond1 116 bond_direction 116 117 atom 118 (201) (18890, 42313, 6024) def bond1 33 117 bond_direction 117 118 atom 119 (202) (22511, 44628, 6010) def bond1 118 bond_direction 118 119 atom 120 (201) (19239, 45257, 2181) def bond1 34 119 bond_direction 119 120 atom 121 (202) (22246, 47435, 18) def bond1 120 bond_direction 120 121 atom 122 (201) (17375, 48231, -1169) def bond1 35 121 bond_direction 121 122 atom 123 (202) (18620, 50322, -4711) def bond1 122 bond_direction 122 123 atom 124 (201) (14011, 51313, -2826) def bond1 36 123 bond_direction 123 124 atom 125 (202) (13019, 53400, -6449) def bond1 124 bond_direction 124 125 atom 126 (201) (10433, 54537, -2232) def bond1 37 125 bond_direction 125 126 atom 127 (202) (7581, 56702, -4608) def bond1 126 bond_direction 126 127 atom 128 (201) (8005, 57884, 309) def bond1 38 127 bond_direction 127 128 atom 129 (202) (4385, 60182, 31) def bond1 128 bond_direction 128 129 atom 130 (201) (7657, 61287, 3749) def bond1 39 129 bond_direction 129 130 atom 131 (202) (4650, 63722, 5621) def bond1 130 bond_direction 130 131 atom 132 (201) (9521, 64660, 6700) def bond1 40 131 bond_direction 131 132 atom 133 (202) (8275, 67182, 9951) def bond1 132 bond_direction 132 133 atom 134 (201) (12884, 67926, 7957) def bond1 41 133 bond_direction 133 134 atom 135 (202) (13877, 70452, 11288) def bond1 134 bond_direction 134 135 atom 136 (201) (16463, 71049, 6961) def bond1 42 135 bond_direction 135 136 atom 137 (202) (19314, 73497, 9046) def bond1 136 bond_direction 136 137 atom 138 (201) (18890, 74050, 4018) def bond1 43 137 bond_direction 137 138 atom 139 (202) (22511, 76365, 4005) def bond1 138 bond_direction 138 139 atom 140 (201) (19239, 76994, 176) def bond1 44 139 bond_direction 139 140 atom 141 (202) (22246, 79172, -1986) def bond1 140 bond_direction 140 141 atom 142 (201) (17375, 79968, -3175) def bond1 45 141 bond_direction 141 142 atom 143 (202) (18620, 82060, -6717) def bond1 142 bond_direction 142 143 atom 144 (201) (14012, 83049, -4833) def bond1 46 143 bond_direction 143 144 atom 145 (202) (13019, 85136, -8456) def bond1 144 bond_direction 144 145 atom 146 (201) (10433, 86274, -4239) def bond1 47 145 bond_direction 145 146 atom 147 (202) (7581, 88438, -6615) def bond1 146 bond_direction 146 147 atom 148 (201) (8005, 89620, -1697) def bond1 48 147 bond_direction 147 148 atom 149 (202) (4385, 91918, -1975) def bond1 148 bond_direction 148 149 atom 150 (201) (7657, 93024, 1743) def bond1 49 149 bond_direction 149 150 atom 151 (202) (4640, 95590, 3583) def bond1 150 bond_direction 150 151 atom 152 (201) (9522, 96463, 4692) def bond1 50 151 bond_direction 151 152 info chunk color = 0 0 153 DnaStrandMarker (DnaMarker5) (127, 127, 127) 152 150 info leaf forwarded = 782937264 mol (DnaStrandChunk5) def atom 153 (202) (44908, 98092, 8181) def bond1 152 bond_direction 152 153 atom 154 (201) (77083, 96422, 6154) def bond1 153 bond_direction 153 154 atom 155 (202) (76292, 94161, 9562) def bond1 154 bond_direction 154 155 atom 156 (201) (73898, 93568, 5366) def bond1 155 bond_direction 155 156 atom 157 (202) (71046, 91257, 7601) def bond1 156 bond_direction 156 157 atom 158 (201) (71470, 90388, 2618) def bond1 157 bond_direction 157 158 atom 159 (202) (67850, 88077, 2751) def bond1 158 bond_direction 158 159 atom 160 (201) (71122, 87208, -1030) def bond1 159 bond_direction 159 160 atom 161 (202) (68115, 84897, -3051) def bond1 160 bond_direction 160 161 atom 162 (201) (72986, 84028, -4187) def bond1 161 bond_direction 161 162 atom 163 (202) (71741, 81717, -7590) def bond1 162 bond_direction 162 163 atom 164 (201) (76349, 80848, -5647) def bond1 163 bond_direction 163 164 atom 165 (202) (77342, 78537, -9132) def bond1 164 bond_direction 164 165 atom 166 (201) (79928, 77668, -4851) def bond1 165 bond_direction 165 166 atom 167 (202) (82779, 75357, -7086) def bond1 166 bond_direction 166 167 atom 168 (201) (82355, 74488, -2102) def bond1 167 bond_direction 167 168 atom 169 (202) (85976, 72177, -2235) def bond1 168 bond_direction 168 169 atom 170 (201) (82704, 71308, 1546) def bond1 169 bond_direction 169 170 atom 171 (202) (85711, 68997, 3567) def bond1 170 bond_direction 170 171 atom 172 (201) (80840, 68128, 4703) def bond1 171 bond_direction 171 172 atom 173 (202) (82085, 65817, 8106) def bond1 172 bond_direction 172 173 atom 174 (201) (77477, 64948, 6162) def bond1 173 bond_direction 173 174 atom 175 (202) (76484, 62637, 9647) def bond1 174 bond_direction 174 175 atom 176 (201) (73898, 61768, 5366) def bond1 175 bond_direction 175 176 atom 177 (202) (71046, 59457, 7601) def bond1 176 bond_direction 176 177 atom 178 (201) (71470, 58588, 2618) def bond1 177 bond_direction 177 178 atom 179 (202) (67850, 56277, 2751) def bond1 178 bond_direction 178 179 atom 180 (201) (71122, 55408, -1030) def bond1 179 bond_direction 179 180 atom 181 (202) (68115, 53097, -3051) def bond1 180 bond_direction 180 181 atom 182 (201) (72986, 52228, -4187) def bond1 181 bond_direction 181 182 atom 183 (202) (71741, 49917, -7590) def bond1 182 bond_direction 182 183 atom 184 (201) (76349, 49048, -5647) def bond1 183 bond_direction 183 184 atom 185 (202) (77342, 46737, -9132) def bond1 184 bond_direction 184 185 atom 186 (201) (79928, 45868, -4851) def bond1 185 bond_direction 185 186 atom 187 (202) (82779, 43557, -7086) def bond1 186 bond_direction 186 187 atom 188 (201) (82355, 42688, -2102) def bond1 187 bond_direction 187 188 atom 189 (202) (85976, 40377, -2235) def bond1 188 bond_direction 188 189 atom 190 (201) (82704, 39508, 1546) def bond1 189 bond_direction 189 190 atom 191 (202) (85711, 37197, 3567) def bond1 190 bond_direction 190 191 atom 192 (201) (80840, 36328, 4703) def bond1 191 bond_direction 191 192 atom 193 (202) (82085, 34017, 8106) def bond1 192 bond_direction 192 193 atom 194 (201) (77477, 33148, 6162) def bond1 193 bond_direction 193 194 atom 195 (202) (76484, 30837, 9647) def bond1 194 bond_direction 194 195 atom 196 (201) (73898, 29968, 5366) def bond1 195 bond_direction 195 196 atom 197 (202) (71046, 27657, 7601) def bond1 196 bond_direction 196 197 atom 198 (201) (71470, 26788, 2618) def bond1 197 bond_direction 197 198 atom 199 (202) (67850, 24477, 2751) def bond1 198 bond_direction 198 199 atom 200 (201) (71122, 23608, -1030) def bond1 199 bond_direction 199 200 atom 201 (202) (68115, 21297, -3051) def bond1 200 bond_direction 200 201 atom 202 (201) (72986, 20428, -4187) def bond1 201 bond_direction 201 202 atom 203 (202) (71741, 18117, -7590) def bond1 202 bond_direction 202 203 atom 204 (201) (76349, 17248, -5647) def bond1 203 bond_direction 203 204 atom 205 (202) (77342, 14937, -9132) def bond1 204 bond_direction 204 205 atom 206 (201) (79928, 14068, -4851) def bond1 205 bond_direction 205 206 atom 207 (202) (82779, 11757, -7086) def bond1 206 bond_direction 206 207 atom 208 (201) (82355, 10888, -2102) def bond1 207 bond_direction 207 208 atom 209 (202) (85976, 8577, -2235) def bond1 208 bond_direction 208 209 atom 210 (201) (82704, 7708, 1546) def bond1 209 bond_direction 209 210 atom 211 (202) (85711, 5397, 3567) def bond1 210 bond_direction 210 211 atom 212 (201) (80840, 4528, 4703) def bond1 211 bond_direction 211 212 atom 213 (202) (82085, 2217, 8106) def bond1 212 bond_direction 212 213 atom 214 (201) (77477, 1348, 6162) def bond1 213 bond_direction 213 214 atom 215 (202) (76484, -961, 9647) def bond1 214 bond_direction 214 215 atom 216 (201) (73898, -1830, 5366) def bond1 215 bond_direction 215 216 atom 217 (202) (71046, -4141, 7601) def bond1 216 bond_direction 216 217 atom 218 (201) (71470, -5010, 2618) def bond1 217 bond_direction 217 218 atom 219 (202) (67850, -7321, 2751) def bond1 218 bond_direction 218 219 atom 220 (201) (71122, -8190, -1030) def bond1 219 bond_direction 219 220 atom 221 (202) (68115, -10501, -3051) def bond1 220 bond_direction 220 221 atom 222 (201) (72986, -11370, -4187) def bond1 221 bond_direction 221 222 atom 223 (202) (71741, -13681, -7590) def bond1 222 bond_direction 222 223 atom 224 (201) (76349, -14550, -5647) def bond1 223 bond_direction 223 224 atom 225 (202) (77342, -16861, -9132) def bond1 224 bond_direction 224 225 atom 226 (201) (79928, -17730, -4851) def bond1 225 bond_direction 225 226 atom 227 (202) (82779, -20041, -7086) def bond1 226 bond_direction 226 227 atom 228 (201) (82355, -20910, -2102) def bond1 227 bond_direction 227 228 atom 229 (202) (85976, -23221, -2235) def bond1 228 bond_direction 228 229 atom 230 (201) (82704, -24090, 1546) def bond1 229 bond_direction 229 230 atom 231 (202) (85711, -26401, 3567) def bond1 230 bond_direction 230 231 atom 232 (201) (80840, -27270, 4703) def bond1 231 bond_direction 231 232 atom 233 (202) (82085, -29581, 8106) def bond1 232 bond_direction 232 233 atom 234 (201) (77477, -30450, 6162) def bond1 233 bond_direction 233 234 atom 235 (202) (76484, -32761, 9647) def bond1 234 bond_direction 234 235 atom 236 (201) (73898, -33630, 5366) def bond1 235 bond_direction 235 236 atom 237 (202) (71046, -35941, 7601) def bond1 236 bond_direction 236 237 atom 238 (201) (71470, -36810, 2618) def bond1 237 bond_direction 237 238 atom 239 (202) (67850, -39121, 2751) def bond1 238 bond_direction 238 239 atom 240 (201) (71122, -39990, -1030) def bond1 239 bond_direction 239 240 atom 241 (202) (68115, -42301, -3051) def bond1 240 bond_direction 240 241 atom 242 (201) (72986, -43170, -4187) def bond1 241 bond_direction 241 242 atom 243 (202) (71741, -45481, -7590) def bond1 242 bond_direction 242 243 atom 244 (201) (76349, -46350, -5647) def bond1 243 bond_direction 243 244 atom 245 (202) (77342, -48661, -9132) def bond1 244 bond_direction 244 245 atom 246 (201) (79928, -49530, -4851) def bond1 245 bond_direction 245 246 atom 247 (202) (82779, -51841, -7086) def bond1 246 bond_direction 246 247 atom 248 (201) (82355, -52710, -2102) def bond1 247 bond_direction 247 248 atom 249 (202) (85976, -55021, -2235) def bond1 248 bond_direction 248 249 atom 250 (201) (82704, -55890, 1546) def bond1 249 bond_direction 249 250 atom 251 (202) (85711, -58201, 3567) def bond1 250 bond_direction 250 251 atom 252 (201) (80840, -59070, 4703) def bond1 53 251 bond_direction 252 53 bond_direction 251 252 info chunk color = 0 0 153 egroup (DnaStrand1) group (DnaStrand2) DnaStrand info opengroup open = True forward_ref (783120024) # DnaStrandMarker (DnaMarker6) mol (DnaStrandChunk4) def atom 253 (201) (18339, -59602, 6738) def bond1 1 atom 254 (202) (17805, -59049, 1721) def bond1 253 bond_direction 254 253 atom 255 (201) (15432, -56570, 4308) def bond1 2 254 bond_direction 255 254 atom 256 (202) (12077, -55936, 552) def bond1 255 bond_direction 256 255 atom 257 (201) (11767, -53402, 4009) def bond1 3 256 bond_direction 257 256 atom 258 (202) (6873, -52600, 2928) def bond1 257 bond_direction 258 257 atom 259 (201) (8744, -50098, 5878) def bond1 4 258 bond_direction 259 258 atom 260 (202) (4180, -49101, 7865) def bond1 259 bond_direction 260 259 atom 261 (201) (7518, -46706, 9127) def bond1 5 260 bond_direction 261 260 atom 262 (202) (5027, -45565, 13400) def bond1 261 bond_direction 262 261 atom 263 (201) (8557, -43311, 12435) def bond1 6 262 bond_direction 263 262 atom 264 (202) (9091, -42130, 17343) def bond1 263 bond_direction 264 263 atom 265 (201) (11463, -39996, 14464) def bond1 7 264 bond_direction 265 264 atom 266 (202) (14819, -38895, 18110) def bond1 265 bond_direction 266 265 atom 267 (201) (15128, -36816, 14361) def bond1 8 266 bond_direction 267 266 atom 268 (202) (20023, -35884, 15333) def bond1 267 bond_direction 268 267 atom 269 (201) (18152, -33774, 12091) def bond1 9 268 bond_direction 269 268 atom 270 (202) (22716, -33036, 9995) def bond1 269 bond_direction 270 269 atom 271 (201) (19378, -30818, 8441) def bond1 10 270 bond_direction 271 270 atom 272 (202) (21868, -30224, 4058) def bond1 271 bond_direction 272 271 atom 273 (201) (18339, -27866, 4732) def bond1 11 272 bond_direction 273 272 atom 274 (202) (17805, -27312, -284) def bond1 273 bond_direction 274 273 atom 275 (201) (15432, -24833, 2302) def bond1 12 274 bond_direction 275 274 atom 276 (202) (12076, -24200, -1452) def bond1 275 bond_direction 276 275 atom 277 (201) (11767, -21666, 2004) def bond1 13 276 bond_direction 277 276 atom 278 (202) (6873, -20864, 922) def bond1 277 bond_direction 278 277 atom 279 (201) (8744, -18361, 3872) def bond1 14 278 bond_direction 279 278 atom 280 (202) (4180, -17365, 5858) def bond1 279 bond_direction 280 279 atom 281 (201) (7518, -14970, 7120) def bond1 15 280 bond_direction 281 280 atom 282 (202) (5027, -13829, 11393) def bond1 281 bond_direction 282 281 atom 283 (201) (8557, -11574, 10428) def bond1 16 282 bond_direction 283 282 atom 284 (202) (9091, -10393, 15336) def bond1 283 bond_direction 284 283 atom 285 (201) (11463, -8259, 12458) def bond1 17 284 bond_direction 285 284 atom 286 (202) (14818, -7158, 16104) def bond1 285 bond_direction 286 285 atom 287 (201) (15128, -5080, 12355) def bond1 18 286 bond_direction 287 286 atom 288 (202) (20023, -4147, 13326) def bond1 287 bond_direction 288 287 atom 289 (201) (18152, -2037, 10084) def bond1 19 288 bond_direction 289 288 atom 290 (202) (22716, -1299, 7988) def bond1 289 bond_direction 290 289 atom 291 (201) (19378, 917, 6435) def bond1 20 290 bond_direction 291 290 atom 292 (202) (21869, 1511, 2052) def bond1 291 bond_direction 292 291 atom 293 (201) (18339, 3869, 2726) def bond1 21 292 bond_direction 293 292 atom 294 (202) (17805, 4422, -2290) def bond1 293 bond_direction 294 293 atom 295 (201) (15432, 6901, 296) def bond1 22 294 bond_direction 295 294 atom 296 (202) (12076, 7535, -3459) def bond1 295 bond_direction 296 295 atom 297 (201) (11767, 10069, -2) def bond1 23 296 bond_direction 297 296 atom 298 (202) (6873, 10871, -1083) def bond1 297 bond_direction 298 297 atom 299 (201) (8744, 13373, 1866) def bond1 24 298 bond_direction 299 298 atom 300 (202) (4180, 14369, 3852) def bond1 299 bond_direction 300 299 atom 301 (201) (7518, 16765, 5114) def bond1 25 300 bond_direction 301 300 atom 302 (202) (5028, 17906, 9387) def bond1 301 bond_direction 302 301 atom 303 (201) (8557, 20160, 8422) def bond1 26 302 bond_direction 303 302 atom 304 (202) (9091, 21342, 13330) def bond1 303 bond_direction 304 303 atom 305 (201) (11463, 23475, 10451) def bond1 27 304 bond_direction 305 304 atom 306 (202) (14818, 24576, 14097) def bond1 305 bond_direction 306 305 atom 307 (201) (15128, 26655, 10349) def bond1 28 306 bond_direction 307 306 atom 308 (202) (20023, 27587, 11320) def bond1 307 bond_direction 308 307 atom 309 (201) (18152, 29698, 8078) def bond1 29 308 bond_direction 309 308 atom 310 (202) (22716, 30436, 5982) def bond1 309 bond_direction 310 309 atom 311 (201) (19378, 32653, 4429) def bond1 30 310 bond_direction 311 310 atom 312 (202) (21868, 33246, 46) def bond1 311 bond_direction 312 311 atom 313 (201) (18339, 35605, 720) def bond1 31 312 bond_direction 313 312 atom 314 (202) (17805, 36159, -4297) def bond1 313 bond_direction 314 313 atom 315 (201) (15432, 38638, -1710) def bond1 32 314 bond_direction 315 314 atom 316 (202) (12076, 39271, -5465) def bond1 315 bond_direction 316 315 atom 317 (201) (11767, 41805, -2008) def bond1 33 316 bond_direction 317 316 atom 318 (202) (6873, 42607, -3089) def bond1 317 bond_direction 318 317 atom 319 (201) (8744, 45110, -139) def bond1 34 318 bond_direction 319 318 atom 320 (202) (4180, 46106, 1846) def bond1 319 bond_direction 320 319 atom 321 (201) (7518, 48502, 3107) def bond1 35 320 bond_direction 321 320 atom 322 (202) (5027, 49643, 7380) def bond1 321 bond_direction 322 321 atom 323 (201) (8557, 51897, 6415) def bond1 36 322 bond_direction 323 322 atom 324 (202) (9091, 53078, 11323) def bond1 323 bond_direction 324 323 atom 325 (201) (11463, 55212, 8445) def bond1 37 324 bond_direction 325 324 atom 326 (202) (14819, 56313, 12091) def bond1 325 bond_direction 326 325 atom 327 (201) (15128, 58392, 8342) def bond1 38 326 bond_direction 327 326 atom 328 (202) (20023, 59324, 9314) def bond1 327 bond_direction 328 327 atom 329 (201) (18152, 61434, 6072) def bond1 39 328 bond_direction 329 328 atom 330 (202) (22716, 62172, 3976) def bond1 329 bond_direction 330 329 atom 331 (201) (19378, 64390, 2422) def bond1 40 330 bond_direction 331 330 atom 332 (202) (21868, 64984, -1959) def bond1 331 bond_direction 332 331 atom 333 (201) (18339, 67342, -1285) def bond1 41 332 bond_direction 333 332 atom 334 (202) (17805, 67895, -6303) def bond1 333 bond_direction 334 333 atom 335 (201) (15432, 70374, -3716) def bond1 42 334 bond_direction 335 334 atom 336 (202) (12076, 71008, -7472) def bond1 335 bond_direction 336 335 atom 337 (201) (11767, 73542, -4015) def bond1 43 336 bond_direction 337 336 atom 338 (202) (6873, 74344, -5096) def bond1 337 bond_direction 338 337 atom 339 (201) (8744, 76847, -2145) def bond1 44 338 bond_direction 339 338 atom 340 (202) (4180, 77843, -159) def bond1 339 bond_direction 340 339 atom 341 (201) (7518, 80238, 1101) def bond1 45 340 bond_direction 341 340 atom 342 (202) (5027, 81379, 5374) def bond1 341 bond_direction 342 341 atom 343 (201) (8557, 83633, 4409) def bond1 46 342 bond_direction 343 342 atom 344 (202) (9091, 84814, 9317) def bond1 343 bond_direction 344 343 atom 345 (201) (11463, 86948, 6438) def bond1 47 344 bond_direction 345 344 atom 346 (202) (14818, 88050, 10084) def bond1 345 bond_direction 346 345 atom 347 (201) (15128, 90128, 6336) def bond1 48 346 bond_direction 347 346 atom 348 (202) (20023, 91060, 7307) def bond1 347 bond_direction 348 347 atom 349 (201) (18152, 93171, 4065) def bond1 49 348 bond_direction 349 348 atom 350 (202) (22683, 93854, 1897) def bond1 349 bond_direction 350 349 atom 351 (201) (19379, 96193, 414) def bond1 50 350 bond_direction 351 350 atom 352 (202) (45242, 97985, -3872) def bond1 351 bond_direction 352 351 info chunk color = 153 0 51 DnaStrandMarker (DnaMarker6) (127, 127, 127) 351 349 info leaf forwarded = 783120024 mol (DnaStrandChunk6) def atom 353 (201) (71975, 96732, -3042) def bond1 352 bond_direction 353 352 atom 354 (202) (72613, 96023, -8057) def bond1 353 bond_direction 354 353 atom 355 (201) (74928, 93568, -5332) def bond1 354 bond_direction 355 354 atom 356 (202) (78284, 92699, -9041) def bond1 355 bond_direction 356 355 atom 357 (201) (78593, 90388, -5431) def bond1 356 bond_direction 357 356 atom 358 (202) (83488, 89519, -6459) def bond1 357 bond_direction 358 357 atom 359 (201) (81617, 87208, -3356) def bond1 358 bond_direction 359 358 atom 360 (202) (86181, 86339, -1311) def bond1 359 bond_direction 360 359 atom 361 (201) (82843, 84028, 98) def bond1 360 bond_direction 361 360 atom 362 (202) (85334, 83159, 4435) def bond1 361 bond_direction 362 361 atom 363 (201) (81804, 80848, 3614) def bond1 362 bond_direction 363 362 atom 364 (202) (81270, 79979, 8586) def bond1 363 bond_direction 364 363 atom 365 (201) (78897, 77668, 5847) def bond1 364 bond_direction 365 364 atom 366 (202) (75541, 76799, 9556) def bond1 365 bond_direction 366 365 atom 367 (201) (75232, 74488, 5946) def bond1 366 bond_direction 367 366 atom 368 (202) (70338, 73619, 6974) def bond1 367 bond_direction 368 367 atom 369 (201) (72209, 71308, 3872) def bond1 368 bond_direction 369 368 atom 370 (202) (67645, 70439, 1827) def bond1 369 bond_direction 370 369 atom 371 (201) (70983, 68128, 417) def bond1 370 bond_direction 371 370 atom 372 (202) (68493, 67259, -3919) def bond1 371 bond_direction 372 371 atom 373 (201) (72022, 64948, -3098) def bond1 372 bond_direction 373 372 atom 374 (202) (72556, 64079, -8071) def bond1 373 bond_direction 374 373 atom 375 (201) (74928, 61768, -5332) def bond1 374 bond_direction 375 374 atom 376 (202) (78284, 60899, -9041) def bond1 375 bond_direction 376 375 atom 377 (201) (78593, 58588, -5431) def bond1 376 bond_direction 377 376 atom 378 (202) (83488, 57719, -6459) def bond1 377 bond_direction 378 377 atom 379 (201) (81617, 55408, -3356) def bond1 378 bond_direction 379 378 atom 380 (202) (86181, 54539, -1311) def bond1 379 bond_direction 380 379 atom 381 (201) (82843, 52228, 98) def bond1 380 bond_direction 381 380 atom 382 (202) (85334, 51359, 4435) def bond1 381 bond_direction 382 381 atom 383 (201) (81804, 49048, 3614) def bond1 382 bond_direction 383 382 atom 384 (202) (81270, 48179, 8586) def bond1 383 bond_direction 384 383 atom 385 (201) (78897, 45868, 5847) def bond1 384 bond_direction 385 384 atom 386 (202) (75541, 44999, 9556) def bond1 385 bond_direction 386 385 atom 387 (201) (75232, 42688, 5946) def bond1 386 bond_direction 387 386 atom 388 (202) (70338, 41819, 6974) def bond1 387 bond_direction 388 387 atom 389 (201) (72209, 39508, 3872) def bond1 388 bond_direction 389 388 atom 390 (202) (67645, 38639, 1827) def bond1 389 bond_direction 390 389 atom 391 (201) (70983, 36328, 417) def bond1 390 bond_direction 391 390 atom 392 (202) (68493, 35459, -3919) def bond1 391 bond_direction 392 391 atom 393 (201) (72022, 33148, -3098) def bond1 392 bond_direction 393 392 atom 394 (202) (72556, 32279, -8071) def bond1 393 bond_direction 394 393 atom 395 (201) (74928, 29968, -5332) def bond1 394 bond_direction 395 394 atom 396 (202) (78284, 29099, -9041) def bond1 395 bond_direction 396 395 atom 397 (201) (78593, 26788, -5431) def bond1 396 bond_direction 397 396 atom 398 (202) (83488, 25919, -6459) def bond1 397 bond_direction 398 397 atom 399 (201) (81617, 23608, -3356) def bond1 398 bond_direction 399 398 atom 400 (202) (86181, 22739, -1311) def bond1 399 bond_direction 400 399 atom 401 (201) (82843, 20428, 98) def bond1 400 bond_direction 401 400 atom 402 (202) (85334, 19559, 4435) def bond1 401 bond_direction 402 401 atom 403 (201) (81804, 17248, 3614) def bond1 402 bond_direction 403 402 atom 404 (202) (81270, 16379, 8586) def bond1 403 bond_direction 404 403 atom 405 (201) (78897, 14068, 5847) def bond1 404 bond_direction 405 404 atom 406 (202) (75541, 13199, 9556) def bond1 405 bond_direction 406 405 atom 407 (201) (75232, 10888, 5946) def bond1 406 bond_direction 407 406 atom 408 (202) (70338, 10019, 6974) def bond1 407 bond_direction 408 407 atom 409 (201) (72209, 7708, 3872) def bond1 408 bond_direction 409 408 atom 410 (202) (67645, 6839, 1827) def bond1 409 bond_direction 410 409 atom 411 (201) (70983, 4528, 417) def bond1 410 bond_direction 411 410 atom 412 (202) (68493, 3659, -3919) def bond1 411 bond_direction 412 411 atom 413 (201) (72022, 1348, -3098) def bond1 412 bond_direction 413 412 atom 414 (202) (72556, 480, -8071) def bond1 413 bond_direction 414 413 atom 415 (201) (74928, -1830, -5332) def bond1 414 bond_direction 415 414 atom 416 (202) (78284, -2699, -9041) def bond1 415 bond_direction 416 415 atom 417 (201) (78593, -5010, -5431) def bond1 416 bond_direction 417 416 atom 418 (202) (83488, -5879, -6459) def bond1 417 bond_direction 418 417 atom 419 (201) (81617, -8190, -3356) def bond1 418 bond_direction 419 418 atom 420 (202) (86181, -9059, -1311) def bond1 419 bond_direction 420 419 atom 421 (201) (82843, -11370, 98) def bond1 420 bond_direction 421 420 atom 422 (202) (85334, -12239, 4435) def bond1 421 bond_direction 422 421 atom 423 (201) (81804, -14550, 3614) def bond1 422 bond_direction 423 422 atom 424 (202) (81270, -15419, 8586) def bond1 423 bond_direction 424 423 atom 425 (201) (78897, -17730, 5847) def bond1 424 bond_direction 425 424 atom 426 (202) (75541, -18599, 9556) def bond1 425 bond_direction 426 425 atom 427 (201) (75232, -20910, 5946) def bond1 426 bond_direction 427 426 atom 428 (202) (70338, -21779, 6974) def bond1 427 bond_direction 428 427 atom 429 (201) (72209, -24090, 3872) def bond1 428 bond_direction 429 428 atom 430 (202) (67645, -24959, 1827) def bond1 429 bond_direction 430 429 atom 431 (201) (70983, -27270, 417) def bond1 430 bond_direction 431 430 atom 432 (202) (68493, -28139, -3919) def bond1 431 bond_direction 432 431 atom 433 (201) (72022, -30450, -3098) def bond1 432 bond_direction 433 432 atom 434 (202) (72556, -31319, -8071) def bond1 433 bond_direction 434 433 atom 435 (201) (74928, -33630, -5332) def bond1 434 bond_direction 435 434 atom 436 (202) (78284, -34499, -9041) def bond1 435 bond_direction 436 435 atom 437 (201) (78593, -36810, -5431) def bond1 436 bond_direction 437 436 atom 438 (202) (83488, -37679, -6459) def bond1 437 bond_direction 438 437 atom 439 (201) (81617, -39990, -3356) def bond1 438 bond_direction 439 438 atom 440 (202) (86181, -40859, -1311) def bond1 439 bond_direction 440 439 atom 441 (201) (82843, -43170, 98) def bond1 440 bond_direction 441 440 atom 442 (202) (85334, -44039, 4435) def bond1 441 bond_direction 442 441 atom 443 (201) (81804, -46350, 3614) def bond1 442 bond_direction 443 442 atom 444 (202) (81270, -47219, 8586) def bond1 443 bond_direction 444 443 atom 445 (201) (78897, -49530, 5847) def bond1 444 bond_direction 445 444 atom 446 (202) (75541, -50399, 9556) def bond1 445 bond_direction 446 445 atom 447 (201) (75232, -52710, 5946) def bond1 446 bond_direction 447 446 atom 448 (202) (70338, -53579, 6974) def bond1 447 bond_direction 448 447 atom 449 (201) (72209, -55890, 3872) def bond1 448 bond_direction 449 448 atom 450 (202) (67645, -56759, 1827) def bond1 449 bond_direction 450 449 atom 451 (201) (70983, -59070, 417) def bond1 450 bond_direction 451 450 atom 452 (202) (45075, -60965, 1072) def bond1 253 451 bond_direction 253 452 bond_direction 452 451 info chunk color = 153 0 51 egroup (DnaStrand2) group (DnaSegment2) DnaSegment info opengroup open = False forward_ref (825217112) # DnaSegmentMarker (DnaMarker7) mol (DnaAxisChunk3) def atom 453 (208) (81086, 97051, -2069) def bond1 353 154 atom 454 (208) (81887, 93568, 736) def bond1 355 156 453 atom 455 (208) (80655, 90388, 3568) def bond1 357 158 454 atom 456 (208) (77994, 87208, 5136) def bond1 359 160 455 atom 457 (208) (74921, 84028, 4840) def bond1 361 162 456 atom 458 (208) (72608, 80848, 2793) def bond1 363 164 457 atom 459 (208) (71939, 77668, -221) def bond1 365 166 458 atom 460 (208) (73171, 74488, -3053) def bond1 367 168 459 atom 461 (208) (75832, 71308, -4620) def bond1 369 170 460 atom 462 (208) (78906, 68128, -4324) def bond1 371 172 461 atom 463 (208) (81218, 64948, -2278) def bond1 373 174 462 atom 464 (208) (81887, 61768, 736) def bond1 375 176 463 atom 465 (208) (80655, 58588, 3568) def bond1 377 178 464 atom 466 (208) (77994, 55408, 5136) def bond1 379 180 465 atom 467 (208) (74921, 52228, 4840) def bond1 381 182 466 atom 468 (208) (72608, 49048, 2793) def bond1 383 184 467 atom 469 (208) (71939, 45868, -221) def bond1 385 186 468 atom 470 (208) (73171, 42688, -3053) def bond1 387 188 469 atom 471 (208) (75832, 39508, -4620) def bond1 389 190 470 atom 472 (208) (78906, 36328, -4324) def bond1 391 192 471 atom 473 (208) (81218, 33148, -2278) def bond1 393 194 472 atom 474 (208) (81887, 29968, 736) def bond1 395 196 473 atom 475 (208) (80655, 26788, 3568) def bond1 397 198 474 atom 476 (208) (77994, 23608, 5136) def bond1 399 200 475 atom 477 (208) (74921, 20428, 4840) def bond1 401 202 476 atom 478 (208) (72608, 17248, 2793) def bond1 403 204 477 atom 479 (208) (71939, 14068, -221) def bond1 405 206 478 atom 480 (208) (73171, 10888, -3053) def bond1 407 208 479 atom 481 (208) (75832, 7708, -4620) def bond1 409 210 480 atom 482 (208) (78906, 4528, -4324) def bond1 411 212 481 atom 483 (208) (81218, 1348, -2278) def bond1 413 214 482 atom 484 (208) (81887, -1830, 736) def bond1 415 216 483 atom 485 (208) (80655, -5010, 3568) def bond1 417 218 484 atom 486 (208) (77994, -8190, 5136) def bond1 419 220 485 atom 487 (208) (74921, -11370, 4840) def bond1 421 222 486 atom 488 (208) (72608, -14550, 2793) def bond1 423 224 487 atom 489 (208) (71939, -17730, -221) def bond1 425 226 488 atom 490 (208) (73171, -20910, -3053) def bond1 427 228 489 atom 491 (208) (75832, -24090, -4620) def bond1 429 230 490 atom 492 (208) (78906, -27270, -4324) def bond1 431 232 491 atom 493 (208) (81218, -30450, -2278) def bond1 433 234 492 atom 494 (208) (81887, -33630, 736) def bond1 435 236 493 atom 495 (208) (80655, -36810, 3568) def bond1 437 238 494 atom 496 (208) (77994, -39990, 5136) def bond1 439 240 495 atom 497 (208) (74921, -43170, 4840) def bond1 441 242 496 atom 498 (208) (72608, -46350, 2793) def bond1 443 244 497 atom 499 (208) (71939, -49530, -221) def bond1 445 246 498 atom 500 (208) (73171, -52710, -3053) def bond1 447 248 499 atom 501 (208) (75832, -55890, -4620) def bond1 449 250 500 atom 502 (208) (78906, -59070, -4324) def bond1 451 252 501 atom 503 (0) (80705, -60932, -4151) def bond1 502 atom 504 (0) (80629, 99040, -3672) def bond1 453 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker7) (127, 127, 127) 502 501 info leaf forwarded = 825217112 egroup (DnaSegment2) egroup (DnaGroup1) egroup (100bp_PAM3_circularized_goodstart) end1 group (Clipboard) info opengroup open = False egroup (Clipboard) end molecular machine part 100bp_PAM3_circularized_goodstart