path: root/cad/tests/PAM_test_structures/Nanocube/nanocube_PAM3_near_equilibrium.mmp

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info leaf forwarded = 149036128
mol (DnaStrandChunk245) def
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info chunk color = 0 170 0
egroup (green)
group (yellow) DnaStrand
info opengroup open = True
forward_ref (149511824) # DnaStrandMarker (DnaMarker-99)
mol (DnaStrandChunk254) def
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info leaf forwarded = 149511824
egroup (yellow)
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forward_ref (149561592) # DnaStrandMarker (DnaMarker-98)
mol (DnaStrandChunk256) def
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info leaf forwarded = 149561592
mol (DnaStrandChunk246) def
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egroup (violet)
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info opengroup open = False
forward_ref (149599016) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk122) def
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atom 491 (300) (84700, -26295, 41794) def
bond1 490 251 371
atom 492 (300) (84710, -26285, 44974) def
bond1 491 252 372
atom 493 (300) (84700, -26275, 48164) def
bond1 492 253 373
atom 494 (300) (84690, -26275, 51354) def
bond1 493 254 374
atom 495 (300) (84660, -26295, 54544) def
bond1 494 255 375
atom 496 (300) (84620, -26325, 57724) def
bond1 495 256 376
atom 497 (300) (84560, -26365, 60914) def
bond1 496 257 377
atom 498 (300) (84450, -26415, 64094) def
bond1 497 258 378
atom 499 (300) (84290, -26535, 67294) def
bond1 498 259 379
atom 500 (300) (84170, -26815, 70554) def
bond1 499 260 380
atom 501 (0) (85966, -26991, 7940) def
bond1 481
atom 502 (0) (84112, -26951, 72137) def
bond1 500
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 481 482
info leaf forwarded = 149599016
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149612024) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk115) def
atom 503 (300) (85240, 55913, 9614) def
bond1 21 301
atom 504 (300) (84910, 55773, 13024) def
bond1 503 22 302
atom 505 (300) (84760, 55663, 16224) def
bond1 504 23 303
atom 506 (300) (84700, 55463, 19424) def
bond1 505 24 304
atom 507 (300) (84660, 55243, 22614) def
bond1 506 25 305
atom 508 (300) (84650, 55043, 25784) def
bond1 507 26 306
atom 509 (300) (84680, 54893, 28944) def
bond1 508 27 307
atom 510 (300) (84700, 54833, 32124) def
bond1 509 28 308
atom 511 (300) (84720, 54813, 35304) def
bond1 510 29 309
atom 512 (300) (84720, 54803, 38494) def
bond1 511 30 310
atom 513 (300) (84720, 54793, 41684) def
bond1 512 31 311
atom 514 (300) (84710, 54783, 44874) def
bond1 513 32 312
atom 515 (300) (84710, 54773, 48074) def
bond1 514 33 313
atom 516 (300) (84720, 54733, 51274) def
bond1 515 34 314
atom 517 (300) (84790, 54683, 54464) def
bond1 516 35 315
atom 518 (300) (84920, 54663, 57654) def
bond1 517 36 316
atom 519 (300) (85100, 54673, 60834) def
bond1 518 37 317
atom 520 (300) (85300, 54683, 64024) def
bond1 519 38 318
atom 521 (300) (85580, 54673, 67234) def
bond1 520 39 319
atom 522 (300) (86020, 54753, 70524) def
bond1 521 40 320
atom 523 (0) (85393, 55978, 8033) def
bond1 503
atom 524 (0) (86231, 54791, 72100) def
bond1 522
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 503 504
info leaf forwarded = 149612024
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149620936) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk123) def
atom 525 (300) (5173, 44394, -55) def
bond1 81 201
atom 526 (300) (5003, 41074, 144) def
bond1 525 82 202
atom 527 (300) (4743, 37864, 144) def
bond1 526 83 203
atom 528 (300) (4553, 34664, 54) def
bond1 527 84 204
atom 529 (300) (4493, 31474, -65) def
bond1 528 85 205
atom 530 (300) (4513, 28294, -155) def
bond1 529 86 206
atom 531 (300) (4553, 25124, -205) def
bond1 530 87 207
atom 532 (300) (4603, 21954, -235) def
bond1 531 88 208
atom 533 (300) (4643, 18784, -235) def
bond1 532 89 209
atom 534 (300) (4653, 15624, -225) def
bond1 533 90 210
atom 535 (300) (4663, 12454, -225) def
bond1 534 91 211
atom 536 (300) (4653, 9284, -225) def
bond1 535 92 212
atom 537 (300) (4653, 6114, -235) def
bond1 536 93 213
atom 538 (300) (4663, 2934, -255) def
bond1 537 94 214
atom 539 (300) (4663, -245, -265) def
bond1 538 95 215
atom 540 (300) (4683, -3425, -265) def
bond1 539 96 216
atom 541 (300) (4723, -6625, -215) def
bond1 540 97 217
atom 542 (300) (4743, -9835, -95) def
bond1 541 98 218
atom 543 (300) (4703, -13055, 54) def
bond1 542 99 219
atom 544 (300) (4533, -16375, 104) def
bond1 543 100 220
atom 545 (0) (4452, -17963, 128) def
bond1 544
atom 546 (0) (5254, 45979, -150) def
bond1 525
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 544 543
info leaf forwarded = 149620936
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149633944) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk116) def
atom 547 (300) (13683, 54973, -365) def
bond1 41 121
atom 548 (300) (17093, 54723, -365) def
bond1 547 42 122
atom 549 (300) (20353, 54643, -505) def
bond1 548 43 123
atom 550 (300) (23593, 54673, -565) def
bond1 549 44 124
atom 551 (300) (26783, 54753, -535) def
bond1 550 45 125
atom 552 (300) (29943, 54833, -465) def
bond1 551 46 126
atom 553 (300) (33103, 54903, -395) def
bond1 552 47 127
atom 554 (300) (36253, 54943, -315) def
bond1 553 48 128
atom 555 (300) (39413, 54943, -265) def
bond1 554 49 129
atom 556 (300) (42573, 54933, -235) def
bond1 555 50 130
atom 557 (300) (45743, 54923, -225) def
bond1 556 51 131
atom 558 (300) (48912, 54923, -215) def
bond1 557 52 132
atom 559 (300) (52091, 54913, -205) def
bond1 558 53 133
atom 560 (300) (55280, 54883, -195) def
bond1 559 54 134
atom 561 (300) (58470, 54843, -205) def
bond1 560 55 135
atom 562 (300) (61670, 54783, -195) def
bond1 561 56 136
atom 563 (300) (64880, 54673, -155) def
bond1 562 57 137
atom 564 (300) (68110, 54494, -115) def
bond1 563 58 138
atom 565 (300) (71360, 54274, -125) def
bond1 564 59 139
atom 566 (300) (74690, 54144, -295) def
bond1 565 60 140
atom 567 (0) (12098, 55089, -365) def
bond1 547
atom 568 (0) (76277, 54082, -376) def
bond1 566
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 547 548
info leaf forwarded = 149633944
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149646952) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk117) def
atom 569 (300) (85430, -16545, -1005) def
bond1 101 261
atom 570 (300) (85520, -13275, -705) def
bond1 569 102 262
atom 571 (300) (85680, -10075, -535) def
bond1 570 103 263
atom 572 (300) (85810, -6895, -405) def
bond1 571 104 264
atom 573 (300) (85910, -3715, -295) def
bond1 572 105 265
atom 574 (300) (86000, -525, -205) def
bond1 573 106 266
atom 575 (300) (86080, 2674, -165) def
bond1 574 107 267
atom 576 (300) (86140, 5874, -175) def
bond1 575 108 268
atom 577 (300) (86160, 9084, -205) def
bond1 576 109 269
atom 578 (300) (86170, 12284, -225) def
bond1 577 110 270
atom 579 (300) (86160, 15474, -255) def
bond1 578 111 271
atom 580 (300) (86160, 18654, -305) def
bond1 579 112 272
atom 581 (300) (86120, 21824, -385) def
bond1 580 113 273
atom 582 (300) (86030, 24994, -485) def
bond1 581 114 274
atom 583 (300) (85900, 28134, -585) def
bond1 582 115 275
atom 584 (300) (85760, 31254, -675) def
bond1 583 116 276
atom 585 (300) (85630, 34364, -705) def
bond1 584 117 277
atom 586 (300) (85620, 37464, -555) def
bond1 585 118 278
atom 587 (300) (85830, 40544, -275) def
bond1 586 119 279
atom 588 (300) (86220, 43774, -55) def
bond1 587 120 280
atom 589 (0) (85387, -18128, -1150) def
bond1 569
atom 590 (0) (86410, 45349, 51) def
bond1 588
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 569 570
info leaf forwarded = 149646952
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149664112) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk118) def
atom 591 (300) (13783, -26175, -625) def
bond1 141 381
atom 592 (300) (17063, -26185, -415) def
bond1 591 142 382
atom 593 (300) (20263, -26305, -305) def
bond1 592 143 383
atom 594 (300) (23463, -26365, -265) def
bond1 593 144 384
atom 595 (300) (26653, -26385, -245) def
bond1 594 145 385
atom 596 (300) (29833, -26375, -225) def
bond1 595 146 386
atom 597 (300) (33013, -26365, -215) def
bond1 596 147 387
atom 598 (300) (36203, -26365, -215) def
bond1 597 148 388
atom 599 (300) (39383, -26355, -225) def
bond1 598 149 389
atom 600 (300) (42553, -26355, -225) def
bond1 599 150 390
atom 601 (300) (45733, -26355, -245) def
bond1 600 151 391
atom 602 (300) (48902, -26345, -265) def
bond1 601 152 392
atom 603 (300) (52061, -26335, -315) def
bond1 602 153 393
atom 604 (300) (55230, -26275, -395) def
bond1 603 154 394
atom 605 (300) (58400, -26175, -455) def
bond1 604 155 395
atom 606 (300) (61560, -26025, -465) def
bond1 605 156 396
atom 607 (300) (64730, -25845, -345) def
bond1 606 157 397
atom 608 (300) (67910, -25715, -15) def
bond1 607 158 398
atom 609 (300) (71090, -25755, 464) def
bond1 608 159 399
atom 610 (300) (74370, -26015, 874) def
bond1 609 160 400
atom 611 (0) (12197, -26170, -727) def
bond1 591
atom 612 (0) (75943, -26140, 1071) def
bond1 610
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 591 592
info leaf forwarded = 149664112
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149673024) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk119) def
atom 613 (300) (4923, 55323, 70554) def
bond1 221 61
atom 614 (300) (4973, 55143, 67234) def
bond1 613 222 62
atom 615 (300) (4903, 55033, 63984) def
bond1 614 223 63
atom 616 (300) (4843, 54983, 60754) def
bond1 615 224 64
atom 617 (300) (4813, 54943, 57544) def
bond1 616 225 65
atom 618 (300) (4793, 54903, 54344) def
bond1 617 226 66
atom 619 (300) (4773, 54883, 51144) def
bond1 618 227 67
atom 620 (300) (4763, 54883, 47954) def
bond1 619 228 68
atom 621 (300) (4763, 54883, 44764) def
bond1 620 229 69
atom 622 (300) (4753, 54883, 41584) def
bond1 621 230 70
atom 623 (300) (4743, 54883, 38404) def
bond1 622 231 71
atom 624 (300) (4733, 54893, 35224) def
bond1 623 232 72
atom 625 (300) (4723, 54913, 32054) def
bond1 624 233 73
atom 626 (300) (4713, 54923, 28874) def
bond1 625 234 74
atom 627 (300) (4703, 54953, 25694) def
bond1 626 235 75
atom 628 (300) (4663, 54993, 22504) def
bond1 627 236 76
atom 629 (300) (4603, 55053, 19304) def
bond1 628 237 77
atom 630 (300) (4533, 55123, 16084) def
bond1 629 238 78
atom 631 (300) (4373, 55143, 12844) def
bond1 630 239 79
atom 632 (300) (4003, 55263, 9504) def
bond1 631 240 80
atom 633 (0) (3828, 55319, 7925) def
bond1 632
atom 634 (0) (4899, 55409, 72141) def
bond1 613
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 632 631
info leaf forwarded = 149673024
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149681936) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk124) def
atom 635 (300) (4703, -26065, 70434) def
bond1 321 161
atom 636 (300) (4793, -26015, 67134) def
bond1 635 322 162
atom 637 (300) (4793, -26085, 63914) def
bond1 636 323 163
atom 638 (300) (4773, -26165, 60714) def
bond1 637 324 164
atom 639 (300) (4743, -26215, 57524) def
bond1 638 325 165
atom 640 (300) (4733, -26215, 54334) def
bond1 639 326 166
atom 641 (300) (4743, -26205, 51164) def
bond1 640 327 167
atom 642 (300) (4743, -26195, 47984) def
bond1 641 328 168
atom 643 (300) (4753, -26185, 44814) def
bond1 642 329 169
atom 644 (300) (4753, -26175, 41634) def
bond1 643 330 170
atom 645 (300) (4753, -26175, 38464) def
bond1 644 331 171
atom 646 (300) (4753, -26185, 35284) def
bond1 645 332 172
atom 647 (300) (4733, -26185, 32114) def
bond1 646 333 173
atom 648 (300) (4713, -26185, 28934) def
bond1 647 334 174
atom 649 (300) (4693, -26175, 25754) def
bond1 648 335 175
atom 650 (300) (4673, -26175, 22564) def
bond1 649 336 176
atom 651 (300) (4683, -26175, 19354) def
bond1 650 337 177
atom 652 (300) (4733, -26185, 16134) def
bond1 651 338 178
atom 653 (300) (4813, -26255, 12894) def
bond1 652 339 179
atom 654 (300) (4773, -26435, 9554) def
bond1 653 340 180
atom 655 (0) (4754, -26521, 7966) def
bond1 654
atom 656 (0) (4660, -26089, 72023) def
bond1 635
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 654 653
info leaf forwarded = 149681936
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149694944) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk125) def
atom 657 (300) (4313, 44494, 79564) def
bond1 181 401
atom 658 (300) (4523, 41194, 79674) def
bond1 657 182 402
atom 659 (300) (4613, 37974, 79894) def
bond1 658 183 403
atom 660 (300) (4643, 34764, 80074) def
bond1 659 184 404
atom 661 (300) (4653, 31564, 80184) def
bond1 660 185 405
atom 662 (300) (4673, 28374, 80234) def
bond1 661 186 406
atom 663 (300) (4693, 25184, 80274) def
bond1 662 187 407
atom 664 (300) (4693, 21984, 80304) def
bond1 663 188 408
atom 665 (300) (4683, 18784, 80314) def
bond1 664 189 409
atom 666 (300) (4663, 15594, 80314) def
bond1 665 190 410
atom 667 (300) (4653, 12404, 80304) def
bond1 666 191 411
atom 668 (300) (4643, 9204, 80294) def
bond1 667 192 412
atom 669 (300) (4643, 6014, 80284) def
bond1 668 193 413
atom 670 (300) (4643, 2824, 80274) def
bond1 669 194 414
atom 671 (300) (4633, -365, 80284) def
bond1 670 195 415
atom 672 (300) (4623, -3555, 80294) def
bond1 671 196 416
atom 673 (300) (4623, -6745, 80334) def
bond1 672 197 417
atom 674 (300) (4663, -9955, 80403) def
bond1 673 198 418
atom 675 (300) (4743, -13175, 80593) def
bond1 674 199 419
atom 676 (300) (4733, -16395, 80923) def
bond1 675 200 420
atom 677 (0) (4728, -17977, 81085) def
bond1 676
atom 678 (0) (4212, 46080, 79511) def
bond1 657
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 676 675
info leaf forwarded = 149694944
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149703856) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk120) def
atom 679 (300) (86990, -16595, 80254) def
bond1 281 461
atom 680 (300) (86550, -13365, 80234) def
bond1 679 282 462
atom 681 (300) (86320, -10115, 80304) def
bond1 680 283 463
atom 682 (300) (86230, -6895, 80304) def
bond1 681 284 464
atom 683 (300) (86180, -3685, 80284) def
bond1 682 285 465
atom 684 (300) (86150, -485, 80284) def
bond1 683 286 466
atom 685 (300) (86140, 2714, 80294) def
bond1 684 287 467
atom 686 (300) (86150, 5904, 80304) def
bond1 685 288 468
atom 687 (300) (86160, 9094, 80304) def
bond1 686 289 469
atom 688 (300) (86170, 12284, 80304) def
bond1 687 290 470
atom 689 (300) (86180, 15474, 80304) def
bond1 688 291 471
atom 690 (300) (86190, 18664, 80294) def
bond1 689 292 472
atom 691 (300) (86200, 21854, 80274) def
bond1 690 293 473
atom 692 (300) (86200, 25034, 80264) def
bond1 691 294 474
atom 693 (300) (86190, 28224, 80234) def
bond1 692 295 475
atom 694 (300) (86150, 31404, 80174) def
bond1 693 296 476
atom 695 (300) (86010, 34614, 80084) def
bond1 694 297 477
atom 696 (300) (85750, 37834, 79994) def
bond1 695 298 478
atom 697 (300) (85440, 41084, 79954) def
bond1 696 299 479
atom 698 (300) (85240, 44474, 80064) def
bond1 697 300 480
atom 699 (0) (87205, -18171, 80264) def
bond1 679
atom 700 (0) (85147, 46060, 80115) def
bond1 698
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 679 680
info leaf forwarded = 149703856
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149716864) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk121) def
atom 701 (300) (13833, -26895, 79944) def
bond1 341 421
atom 702 (300) (17073, -26615, 80034) def
bond1 701 342 422
atom 703 (300) (20263, -26495, 80194) def
bond1 702 343 423
atom 704 (300) (23443, -26465, 80274) def
bond1 703 344 424
atom 705 (300) (26623, -26455, 80294) def
bond1 704 345 425
atom 706 (300) (29813, -26445, 80304) def
bond1 705 346 426
atom 707 (300) (32993, -26445, 80304) def
bond1 706 347 427
atom 708 (300) (36183, -26455, 80304) def
bond1 707 348 428
atom 709 (300) (39373, -26455, 80294) def
bond1 708 349 429
atom 710 (300) (42553, -26465, 80284) def
bond1 709 350 430
atom 711 (300) (45743, -26475, 80284) def
bond1 710 351 431
atom 712 (300) (48922, -26485, 80274) def
bond1 711 352 432
atom 713 (300) (52101, -26495, 80264) def
bond1 712 353 433
atom 714 (300) (55280, -26515, 80244) def
bond1 713 354 434
atom 715 (300) (58460, -26515, 80224) def
bond1 714 355 435
atom 716 (300) (61640, -26495, 80184) def
bond1 715 356 436
atom 717 (300) (64840, -26415, 80144) def
bond1 716 357 437
atom 718 (300) (68050, -26255, 80144) def
bond1 717 358 438
atom 719 (300) (71280, -26065, 80224) def
bond1 718 359 439
atom 720 (300) (74560, -26015, 80413) def
bond1 719 360 440
atom 721 (0) (12250, -27032, 79900) def
bond1 701
atom 722 (0) (76147, -25991, 80504) def
bond1 720
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 701 702
info leaf forwarded = 149716864
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (149734024) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk126) def
atom 723 (300) (74410, 54973, 80483) def
bond1 1 441
atom 724 (300) (71140, 54743, 80384) def
bond1 723 2 442
atom 725 (300) (67900, 54693, 80413) def
bond1 724 3 443
atom 726 (300) (64690, 54723, 80443) def
bond1 725 4 444
atom 727 (300) (61480, 54763, 80453) def
bond1 726 5 445
atom 728 (300) (58290, 54803, 80433) def
bond1 727 6 446
atom 729 (300) (55110, 54823, 80393) def
bond1 728 7 447
atom 730 (300) (51941, 54833, 80364) def
bond1 729 8 448
atom 731 (300) (48762, 54833, 80334) def
bond1 730 9 449
atom 732 (300) (45583, 54833, 80314) def
bond1 731 10 450
atom 733 (300) (42393, 54833, 80304) def
bond1 732 11 451
atom 734 (300) (39203, 54823, 80284) def
bond1 733 12 452
atom 735 (300) (36003, 54813, 80274) def
bond1 734 13 453
atom 736 (300) (32813, 54783, 80274) def
bond1 735 14 454
atom 737 (300) (29623, 54723, 80324) def
bond1 736 15 455
atom 738 (300) (26443, 54683, 80413) def
bond1 737 16 456
atom 739 (300) (23273, 54623, 80513) def
bond1 738 17 457
atom 740 (300) (20103, 54534, 80643) def
bond1 739 18 458
atom 741 (300) (16933, 54414, 80803) def
bond1 740 19 459
atom 742 (300) (13693, 54394, 81043) def
bond1 741 20 460
atom 743 (0) (12108, 54384, 81160) def
bond1 742
atom 744 (0) (75996, 55084, 80531) def
bond1 723
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 742 741
info leaf forwarded = 149734024
egroup (Segment 2)
egroup (Ligated DNA Cube1)
egroup (60bp_PAM3_4way_junction)
end1
group (Clipboard)
info opengroup open = False
egroup (Clipboard)
end molecular machine part 60bp_PAM3_4way_junction