summaryrefslogtreecommitdiff
path: root/cad/tests/PAM_test_structures/3way_4way_junctions/60bp_PAM5_3way_junction.mmp
blob: 369d978de5898f3e1bd2837f5e228b98607c6552 (plain)
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mmpformat 080327 required; 080412 preferred
kelvin 300
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egroup (View Data)
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egroup (DnaSegment1)
group (DnaStrand1) DnaStrand
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forward_ref (151015336) # DnaStrandMarker (DnaMarker2)
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egroup (DnaStrand1)
group (DnaStrand2) DnaStrand
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forward_ref (151180752) # DnaStrandMarker (DnaMarker3)
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info leaf forwarded = 151180752
mol (DnaStrandChunk1777) def
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atom 159 (201) (48581, -36522, -5107) def
bond1 158
bond_direction 158 159
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bond1 159
bond_direction 159 160
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bond1 160
bond_direction 160 161
atom 162 (202) (40419, -36187, -2492) def
bond1 161
bond_direction 161 162
atom 163 (201) (42373, -33422, 1289) def
bond1 162
bond_direction 162 163
atom 164 (202) (38584, -33577, 3310) def
bond1 163
bond_direction 163 164
atom 165 (201) (41763, -29786, 4446) def
bond1 164
bond_direction 164 165
atom 166 (202) (39326, -28811, 7849) def
bond1 165
bond_direction 165 166
atom 167 (201) (42305, -25189, 5905) def
bond1 166
bond_direction 166 167
atom 168 (202) (41585, -22779, 9390) def
bond1 167
bond_direction 167 168
atom 169 (201) (43013, -20455, 5109) def
bond1 168
bond_direction 168 169
atom 170 (202) (43719, -16853, 7344) def
bond1 169
bond_direction 169 170
atom 171 (201) (42836, -16458, 2361) def
bond1 170
bond_direction 170 171
atom 172 (202) (44132, -12363, 2494) def
bond1 171
bond_direction 171 172
atom 173 (201) (41064, -13794, -1287) def
bond1 172
bond_direction 172 173
atom 174 (202) (41889, -10093, -3308) def
bond1 173
bond_direction 173 174
atom 175 (201) (37595, -12549, -4444) def
bond1 174
bond_direction 174 175
atom 176 (202) (37068, -9977, -7847) def
bond1 175
bond_direction 175 176
atom 177 (201) (32975, -12266, -5903) def
bond1 176
bond_direction 176 177
atom 178 (202) (30731, -11129, -9388) def
bond1 177
bond_direction 177 178
atom 179 (201) (28189, -12120, -5107) def
bond1 178
bond_direction 178 179
atom 180 (202) (24519, -12176, -7342) def
bond1 179
bond_direction 179 180
atom 181 (201) (24288, -11237, -2359) def
bond1 180
bond_direction 180 181
atom 182 (202) (20027, -11786, -2492) def
bond1 181
bond_direction 181 182
atom 183 (201) (21982, -9020, 1289) def
bond1 182
bond_direction 182 183
atom 184 (202) (18192, -9175, 3310) def
bond1 183
bond_direction 183 184
atom 185 (201) (21372, -5385, 4446) def
bond1 144 184
bond_direction 185 144
bond_direction 184 185
atom 186 (0) (61312, -52823, 9145) def
bond1 146
bond_direction 186 146
info chunk color = 0 0 153
egroup (DnaStrand2)
group (DnaSegment2) DnaSegment
info opengroup open = False
forward_ref (151659344) # DnaSegmentMarker (DnaMarker4)
mol (DnaAxisChunk870) def
atom 187 (208) (24194, 15872, -4581) def
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atom 188 (208) (23491, 20238, -4877) def
bond1 26 187
atom 189 (208) (23128, 24369, -3310) def
bond1 28 188
atom 190 (208) (23937, 27681, -478) def
bond1 30 189
atom 191 (208) (26305, 29908, 2537) def
bond1 32 190
atom 192 (208) (30022, 31192, 4583) def
bond1 34 191
atom 193 (208) (34362, 32042, 4879) def
bond1 36 192
atom 194 (208) (38363, 33128, 3312) def
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atom 195 (208) (41192, 35031, 480) def
bond1 40 194
atom 196 (208) (42464, 38023, -2535) def
bond1 42 195
atom 197 (208) (42387, 41954, -4581) def
bond1 44 196
atom 198 (208) (41684, 46321, -4877) def
bond1 46 197
atom 199 (208) (41320, 50450, -3310) def
bond1 48 198
atom 200 (208) (42130, 53764, -478) def
bond1 50 199
atom 201 (208) (44498, 55990, 2537) def
bond1 52 200
atom 202 (208) (48214, 57275, 4583) def
bond1 54 201
atom 203 (208) (52554, 58124, 4879) def
bond1 56 202
atom 204 (208) (56556, 59210, 3312) def
bond1 58 203
atom 205 (208) (59385, 61113, 480) def
bond1 60 204
atom 206 (208) (60657, 64105, -2535) def
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atom 207 (0) (24605, 13315, -4408) def
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atom 208 (0) (61401, 65856, -4300) def
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker4) (127, 127, 127) 187 188
info leaf forwarded = 151659344
egroup (DnaSegment2)
group (DnaStrand4) DnaStrand
info opengroup open = True
forward_ref (151109720) # DnaStrandMarker (DnaMarker6)
mol (DnaStrandChunk1774) def
atom 209 (201) (25781, 14765, 4446) def
bond1 187
atom 210 (202) (30273, 12692, 3310) def
bond1 209
bond_direction 210 209
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bond1 211
bond_direction 212 211
atom 213 (201) (30661, 19115, -2359) def
bond1 189 212
bond_direction 213 212
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bond_direction 214 213
atom 215 (201) (30490, 23112, -5107) def
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bond1 215
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atom 218 (202) (26091, 31117, -7847) def
bond1 217
bond_direction 218 217
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bond1 219
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bond1 221
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bond_direction 225 224
atom 226 (202) (37258, 38835, 9390) def
bond1 225
bond_direction 226 225
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bond_direction 227 226
atom 228 (202) (43672, 38240, 7849) def
bond1 227
bond_direction 228 227
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bond_direction 229 228
atom 230 (202) (48465, 38774, 3310) def
bond1 229
bond_direction 230 229
atom 231 (201) (47320, 42389, 1289) def
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bond_direction 231 230
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bond1 231
bond_direction 232 231
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bond_direction 233 232
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bond1 233
bond_direction 234 233
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bond1 200 234
bond_direction 235 234
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bond1 235
bond_direction 236 235
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bond1 201 236
bond_direction 237 236
atom 238 (202) (44284, 57199, -7847) def
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bond_direction 238 237
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bond1 202 238
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bond_direction 244 243
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atom 246 (202) (55451, 64917, 9390) def
bond1 245
bond_direction 246 245
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bond_direction 247 246
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bond1 247
bond_direction 248 247
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bond1 248
bond_direction 249 248
info chunk color = 0 255 0
DnaStrandMarker (DnaMarker6) (0, 255, 0) 209 211
info leaf forwarded = 151109720
mol (DnaStrandChunk1778) def
atom 250 (201) (66883, -46092, -3355) def
atom 251 (202) (65916, -45768, -8327) def
bond1 250
bond_direction 251 250
atom 252 (201) (62613, -45517, -5588) def
bond1 251
bond_direction 252 251
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bond1 252
bond_direction 253 252
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bond_direction 254 253
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bond1 254
bond_direction 255 254
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bond_direction 256 255
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bond1 256
bond_direction 257 256
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bond_direction 258 257
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bond_direction 260 259
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bond_direction 261 260
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bond_direction 263 262
atom 264 (201) (50145, -31071, 5689) def
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atom 265 (202) (53344, -27265, 6717) def
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atom 268 (201) (49328, -23465, 160) def
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bond_direction 268 267
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atom 270 (201) (46491, -21691, -3355) def
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bond_direction 270 269
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bond_direction 271 270
atom 272 (201) (42221, -21116, -5588) def
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bond_direction 272 271
atom 273 (202) (39090, -22600, -9297) def
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bond_direction 273 272
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bond_direction 275 274
atom 276 (201) (33012, -20524, -3613) def
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bond_direction 276 275
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bond_direction 277 276
atom 278 (201) (30031, -18870, -158) def
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atom 281 (202) (28642, -14754, 8329) def
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bond_direction 281 280
atom 282 (201) (28980, -11460, 5590) def
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atom 283 (202) (30998, -8642, 9299) def
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bond_direction 283 282
atom 284 (201) (29753, -6670, 5689) def
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bond_direction 284 283
atom 285 (202) (32952, -2864, 6717) def
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bond_direction 285 284
atom 286 (201) (30034, -2291, 3615) def
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bond_direction 286 285
atom 287 (202) (32979, 1301, 1570) def
bond1 286
bond_direction 287 286
atom 288 (201) (28936, 934, 160) def
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bond_direction 288 287
atom 289 (202) (27942, 7694, 1815) def
bond1 209 288
bond_direction 209 289
bond_direction 289 288
atom 290 (0) (70997, -47902, -2335) def
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info chunk color = 0 255 0
egroup (DnaStrand4)
group (DnaSegment3) DnaSegment
info opengroup open = False
forward_ref (96173872) # DnaSegmentMarker (DnaMarker7)
mol (DnaAxisChunk872) def
atom 291 (208) (59826, -51990, -2535) def
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atom 292 (208) (57274, -49979, 480) def
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atom 293 (208) (56180, -46748, 3312) def
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atom 294 (208) (56183, -42602, 4879) def
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atom 295 (208) (56502, -38191, 4583) def
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atom 296 (208) (56239, -34268, 2537) def
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atom 297 (208) (54712, -31400, -478) def
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atom 298 (208) (51727, -29749, -3310) def
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atom 299 (208) (47646, -29014, -4877) def
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atom 300 (208) (43248, -28545, -4581) def
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atom 301 (208) (39435, -27589, -2535) def
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atom 302 (208) (36882, -25577, 480) def
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atom 303 (208) (35789, -22348, 3312) def
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atom 304 (208) (35792, -18202, 4879) def
bond1 276 173 303
atom 305 (208) (36111, -13791, 4583) def
bond1 278 175 304
atom 306 (208) (35845, -9866, 2537) def
bond1 280 177 305
atom 307 (208) (34319, -6997, -478) def
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atom 308 (208) (31335, -5348, -3310) def
bond1 284 181 307
atom 309 (208) (27255, -4614, -4877) def
bond1 286 183 308
atom 310 (208) (22856, -4145, -4581) def
bond1 288 185 309
atom 311 (0) (20282, -3871, -4408) def
bond1 310
atom 312 (0) (61320, -53167, -4301) def
bond1 291
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker7) (127, 127, 127) 310 309
info leaf forwarded = 96173872
egroup (DnaSegment3)
egroup (DnaGroup1)
egroup (60bp_PAM3_3way_junction)
end1
group (Clipboard)
info opengroup open = False
egroup (Clipboard)
end molecular machine part 60bp_PAM3_3way_junction