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# Copyright 2007-2008 Nanorex, Inc. See LICENSE file for details.
"""
dna_updater_commands.py - UI commands offered directly by the dna updater.
@author: Bruce
@version: $Id$
@copyright: 2007-2008 Nanorex, Inc. See LICENSE file for details.
"""
from utilities.debug import register_debug_menu_command
from model.global_model_changedicts import _changed_structure_Atoms
import foundation.env as env
from platform_dependent.PlatformDependent import fix_plurals
from utilities.Log import greenmsg
from dna.model.pam3plus5_ops import add_basepair_handles_to_atoms #k import ok?
# ==
def initialize_commands():
_register_our_debug_menu_commands()
return
# ==
def rescan_atoms_in_current_part(assy, only_selected = False):
oldlen = len(_changed_structure_Atoms)
for mol in assy.molecules:
for atom in mol.atoms.itervalues():
if not only_selected or atom.picked or \
(atom.is_singlet() and atom.singlet_neighbor().picked):
_changed_structure_Atoms[atom.key] = atom
newlen = len(_changed_structure_Atoms)
msg = "len(_changed_structure_Atoms) %d -> %d" % (oldlen, newlen)
env.history.message(greenmsg( "DNA debug command:") + " " + msg)
assy.w.win_update() #bruce 080312 bugfix
return
def rescan_all_atoms(glpane):
rescan_atoms_in_current_part( glpane.assy)
def rescan_selected_atoms(glpane):
rescan_atoms_in_current_part( glpane.assy, only_selected = True)
def add_basepair_handles_to_selected_atoms(glpane): #bruce 080515
assy = glpane.assy
goodcount, badcount = add_basepair_handles_to_atoms(assy.selatoms.values())
msg = "adding handles to %d duplex Gv5 atom(s)" % (goodcount,)
if badcount:
msg += " (but not %d other selected atom(s))" % (badcount,)
msg = fix_plurals(msg)
env.history.message(greenmsg( "Add basepair handles:") + " " + msg)
assy.w.win_update()
return
# ==
def _register_our_debug_menu_commands():
register_debug_menu_command( "DNA: rescan all atoms", rescan_all_atoms )
register_debug_menu_command( "DNA: rescan selected atoms", rescan_selected_atoms )
register_debug_menu_command( "DNA: add basepair handles", add_basepair_handles_to_selected_atoms )
# end
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