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# Copyright 2007-2008 Nanorex, Inc. See LICENSE file for details.
"""
PM_PAM3_AtomChooser.py
@author: Ninad
@version: $Id$
@copyright: 2007-2008 Nanorex, Inc. All rights reserved.
"""
from PM.PM_MolecularModelingKit import PM_MolecularModelingKit
from utilities.constants import diBALL
from utilities.GlobalPreferences import pref_MMKit_include_experimental_PAM_atoms
# Elements button list to create PAM3 atoms toolbutton group.
# Format:
# - button type
# - buttonId (element number),
# - buttonText (element symbol),
# - iconPath
# - tooltip (element name)
# - shortcut
# - column
# - row
PAM3_ATOMS_BUTTON_LIST = [
#bruce 080412 revised this
( "QToolButton", 300, "Ax3", "", "PAM3-Axis", None, 0, 0 ),
( "QToolButton", 301, "Ss3", "", "PAM3-Sugar", None, 1, 0 ),
## ( "QToolButton", 303, "Sj3", "", "PAM3-Sugar-Junction", None, 1, 1 ),
## ( "QToolButton", 304, "Ae3", "", "PAM3-Axis-End", None, 1, 0 ),
## ( "QToolButton", 306, "Sh3", "", "PAM3-Sugar-Hydroxyl", None, 2, 1 ),
## ( "QToolButton", 307, "Hp3", "", "PAM3-Hairpin", None, 0, 2 )
#NOTE: Following atoms are not used for now
#( "QToolButton", 302, "Pl3", "", "PAM3-Phosphate", None, 0, 2 ),
#( "QToolButton", 305, "Se3", "", "PAM3-Sugar-End", None, 1, 2 ),
]
PAM3_ATOMS_BUTTON_LIST_EXPERIMENTAL = [
#bruce 080412 added this
( "QToolButton", 310, "Ub3", "", "PAM3-Unpaired-base", None, 0, 1 ),
( "QToolButton", 311, "Ux3", "", "PAM3-Unpaired-base-x", None, 1, 1 ),
( "QToolButton", 312, "Uy3", "", "PAM3-Unpaired-base-y", None, 2, 1 ),
]
if pref_MMKit_include_experimental_PAM_atoms():
PAM3_ATOMS_BUTTON_LIST += PAM3_ATOMS_BUTTON_LIST_EXPERIMENTAL
class PM_PAM3_AtomChooser( PM_MolecularModelingKit ):
"""
The PM_PAM3_AtomChooser widget provides a PAM3 Atom Chooser,
PAM3 stands for "Three Pseudo Atom Model "
contained in its own group box, for a Property Manager dialog (or
as a sub groupbox for Atom Chooser GroupBox.)
A PM_PAM3_AtomChooser is a selection widget that displays all PAM3 atoms
supported in NE1.
@see: B{elements.py}
@see: B{L{PM_MolecularModelingKit}}
"""
viewerDisplay = diBALL
def __init__(self,
parentWidget,
parentPropMgr = None,
title = "",
element = "Ss3",
elementViewer = None
):
"""
Appends a PM_PAM3_AtomChooser widget to the bottom of I{parentWidget},
a Property Manager dialog. (or as a sub groupbox for Atom Chooser
GroupBox.)
@param parentWidget: The parent PM_Dialog or PM_groupBox containing this
widget.
@type parentWidget: PM_Dialog or PM_GroupBox
@param parentPropMgr: The parent Property Manager
@type parentPropMgr: PM_Dialog or None
@param title: The button title on the group box containing the
Atom Chooser.
@type title: str
@param element: The initially selected PAM3 atom. It can be either an
(PAM3) atom symbol or name.
@type element: str
"""
PM_MolecularModelingKit.__init__( self,
parentWidget,
parentPropMgr,
title,
element,
elementViewer)
self._elementsButtonGroup.setButtonSize(width = 38, height = 38)
def _addGroupBoxes(self):
"""
various groupboxes present inside the PAM3 Atom chooser groupbox.
"""
self._addElementsGroupBox(self)
def getElementsButtonList(self):
"""
Return the list of buttons in the PAM3 Atom chooser.
@return: List containing information about the PAM3 atom toolbuttons
@rtype: list
"""
return PAM3_ATOMS_BUTTON_LIST
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