blob: c3826812966dccd1c48b22aec1da5c1706d75255 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
|
<h3>Desiderata for Diamond Age
</h3>
Current status is shown in [brackets]; [*] means essentially done. [] means not started.
[n/m] means
<ul>
<li><font size="+1">Files:</font>
<ul>
<li> Loading molecule (atomic position) files in various formats [pdb, mmp]
</li>
<li> Saving to various formats [mmp]
<ul>
<li> as single file [*]</li>
<li> as multiple files</li></ul>
</li>
<li> Managing project directories and libraries
</li>
<li> Producing pictures, movies [ppm]
</li></li></ul>
<li><font size="+1">File structure:</font>
<ul>
<li> Atoms [*]
</li>
<li> Bonds [*]
</li>
<li> Parts/molecule hierarchy [1]
</li>
<li> Jigs
<ul>
<li> Shapes
</li> <li> Motors [1]
</li> <li> Springs
</li> <li> Dashpots
</li> <li> Constraints [1]
</li> <li> Heatsinks
</li> </ul>
</li>
<li> Instrumentation
<ul>
<li> Position, velocity readouts
</li> <li> Thermometers
</li> <li> Dynamometers
</li> <li> Other force, energy readouts
</li> </ul>
</li>
<li>
Movie files
<ul>
<li> video [1]</li>
<li> trajectory</li>
</ul>
</li>
</ul></li>
<li>
<font size="+1">Display:</font>
<ul>
<li> Multiple assemblies [*]</li>
<li> Multiple views per assembly</li>
<li> Measurement
<ul>
<li> Grids [2]</li>
<li> Rulers</li>
<li> Dividers</li>
<li> Parallels</li>
<li> Pantographs</li>
<li> Envelopes</li>
</ul></li>
<li> Representations
<ul>
<li> Invisible [*]</li>
<li> bond-lines [*]</li>
<li> CPK [*]</li>
<li> van der Waals [*]</li>
<li> Lozenge</li>
<li> Open bonds</li>
<li> Bounded continuum</li>
<li> Surface types</li>
<li> Structural</li>
<li> Diagrammatic</li>
</ul></li>
<li> Variation of Representation
<ul>
<li> Hierarchical [3]</li>
<li> Zoned [.5]</li>
<li> Structure-dependent</li>
</ul></li>
<li> Manipulation
<ul>
<li> Viewpoint
<ul>
<li> Trackball [*]</li>
<li> Pan [*]</li>
<li> Zoom [*]</li>
<li> predefined orientations [*]</li>
</ul></li>
<li> Selection
<ul>
<li> All [2]</li>
<li> None [*]</li>
<li> Invert [2]</li>
<li> Connected [*]</li>
<li> Doubly Connected [*]</li>
<li> By pointing [2]</li>
<li> By circling [1]</li>
</ul></li>
<li>
Motion of selection
<ul>
<li> Trackball [*]</li>
<li> XYZ [*]</li>
</ul></li></ul></li>
<li> Info displays (status line, etc)
<ul>
<li> Indicator for invisible selection</li>
<li> Other selection status</li>
<li> Forces, stiffnesses, thermal postional uncertainty</li>
<li> Atom type, bonding</li>
</ul></li>
<li> Side view
<ul>
<li> clipping planes</li>
<li> Cookie-cutter sheet surfaces</li>
<li> Point of view</li>
</ul></li>
<li> Hardware
<ul>
<li> Joystick</li>
<li> Spaceball</li>
<li> Dataglove</li>
<li> Haptic manipulator</li>
<li> Stereo view</li>
<li> Multiple monitors</li>
</ul> </li>
</ul>
</li>
<li><font size="+1">Structural manipulation</font>
<ul>
<li> Edit as tree structure
<ul>
<li>With copying</li>
<li>With reference</li>
<li>With parametrization</li>
<li>With analogical quadrature</li>
</ul></li>
<li> Undo
</li>
<li> Selection
<ul>
<li>Separate [*]</li>
<li>Merge</li>
<li>Unbond</li>
<li>Bond</li>
<li>Delete [*]</li>
<li>Duplicate [*]</li>
</ul></li>
<li> Creating Structure
<ul>
<li>Cutting out shapes [*]</li>
<li>Filling CSG shapes</li>
<li>Welding existing structure</li>
<li>Structure-shape interaction</li>
<li>Creating/modifying motors and instruments [2]</li>
<li>Creating/modifying shapes as jigs</li>
</ul></li>
<li> Deposition
<ul>
<li>Atom-by atom</li>
<li>Spray</li>
<li>Passivation by transmutation [*]</li>
</ul></li>
<li> Multiple application
<ul>
<li>Copy-Move-Bond</li>
<li>iterative (crystal lattice)</li>
<li>Symmetrical
<ul> <li>Bilateral</li>
<li>Radial</li>
<li>Cylindrical</li></ul></li>
<li>Recursive (L-systems)</li>
<li>Macros
<ul> <li>Keyboard</li>
<li>Scripts</li></ul>
</li></ul></li>
<li> Minimization
<ul>
<li>Free</li>
<li>With applied forces</li>
<li>With motion constraints</li>
</ul></li></ul></li>
<li><font size="+1">Libraries</font>
<ul>
<li>Ontology</li>
<li>Parametrization</li>
<li>Substructures (Kaehler brackets)</li>
<li>Parts</li>
<li>Higher-level structures</li>
<li>Automatic parts selection</li>
</ul></li>
<li><font size="+1">Analysis</font>
<ul><li>
Static
<ul>
<li>Stiffness</li>
<li>Thermal variation</li>
<li>PES mapping</li>
<li>Configuration space</li>
</ul></li><li>
Dynamic
<ul>
<li>Molecular dynamics [*]</li>
<li>Kinematic trajectory</li>
<li>Multi-level simulation
<ul>
<li>Ab initio</li>
<li>Density functional</li>
<li>Charge semi-empirical</li>
<li>Bond mechanics [*]
Reduced hydrogen model</li>
<li>Bounded Continuum</li>
<li>Finite element</li>
<li>Rigid parts</li>
<li>Schematic</li>
</ul></li></ul></li><li>
Control inputs for tests
<ul>
<li>Real-time manual</li>
<li>Signal trace (Line Graphs)</li>
<li>Scripts</li>
</ul></li><li>
Output for instruments
<ul>
<li>Real-time meters, graphics</li>
<li>Signal trace (Line Graphs)</li>
<li>Statistical Summaries</li>
</ul></li></ul>
<li><font size="+1">Program organization</font>
<ul>
<li>Stand-alone</li>
<li>Client-server</li>
<li>Interoperability</li>
<li>Scripting</li>
<li>Plug-ins</li>
<li>Collaborative design assistance</li>
</ul></li></ul>
|
