diff options
| author | Eric Messick <ericm@nanorex.com> | 2008-09-15 17:52:11 +0000 |
|---|---|---|
| committer | Eric Messick <ericm@nanorex.com> | 2008-09-15 17:52:11 +0000 |
| commit | a18c13f5263522b913ce2e072a9bf42872700539 (patch) | |
| tree | 30fef287435ee47a5e45901c21b9a45f2d1c1e9a /sim/src/Makefile | |
| parent | 67f22548f66b9ad69e87058d3ae7c359984ccc4b (diff) | |
| download | nanoengineer-a18c13f5263522b913ce2e072a9bf42872700539.tar.gz nanoengineer-a18c13f5263522b913ce2e072a9bf42872700539.zip | |
AMBER atomtype feedback
Diffstat (limited to 'sim/src/Makefile')
| -rwxr-xr-x | sim/src/Makefile | 155 |
1 files changed, 85 insertions, 70 deletions
diff --git a/sim/src/Makefile b/sim/src/Makefile index a9d210573..789a9f265 100755 --- a/sim/src/Makefile +++ b/sim/src/Makefile @@ -67,6 +67,7 @@ endif COMMONOBJS=\ allocate.o \ + amber_patterns.o \ dynamics.o \ globals.o \ hashtable.o \ @@ -88,7 +89,7 @@ COMMONOBJS=\ rigid-ode.o \ structcompare.o \ writemovie.o - + ifeq ($(OS),Windows_NT) COMMONOBJS+= strtok_r.o endif @@ -244,129 +245,143 @@ depends: depend # DO NOT DELETE allocate.o: allocate.h +amber_patterns.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h +amber_patterns.o: minimize.h structcompare.h part.h newtables.h interpolate.h +amber_patterns.o: readmmp.h readxyz.h printers.h dynamics.h jigs.h +amber_patterns.o: amber_patterns.h pam5_patterns.h pattern.h potential.h +amber_patterns.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h +amber_patterns.o: globals.h dynamics.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h dynamics.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -dynamics.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -dynamics.o: potential.h minstructure.h writemovie.h rigid.h -dynamics.o: printGromacsTopology.h globals.h +dynamics.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +dynamics.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +dynamics.o: rigid.h printGromacsTopology.h globals.h globals.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h globals.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -globals.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -globals.o: potential.h minstructure.h writemovie.h rigid.h -globals.o: printGromacsTopology.h globals.h +globals.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +globals.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +globals.o: rigid.h printGromacsTopology.h globals.h glviewer.o: allocate.h hashtable.o: allocate.h hashtable.h interpolate.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h interpolate.o: minimize.h structcompare.h part.h newtables.h interpolate.h interpolate.o: readmmp.h readxyz.h printers.h dynamics.h jigs.h -interpolate.o: pam5_patterns.h pattern.h potential.h minstructure.h -interpolate.o: writemovie.h rigid.h printGromacsTopology.h globals.h +interpolate.o: amber_patterns.h pam5_patterns.h pattern.h potential.h +interpolate.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h +interpolate.o: globals.h jigs.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h jigs.o: structcompare.h part.h newtables.h interpolate.h readmmp.h readxyz.h -jigs.o: printers.h dynamics.h jigs.h pam5_patterns.h pattern.h potential.h -jigs.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h globals.h +jigs.o: printers.h dynamics.h jigs.h amber_patterns.h pam5_patterns.h +jigs.o: pattern.h potential.h minstructure.h writemovie.h rigid.h +jigs.o: printGromacsTopology.h globals.h lin-alg.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h lin-alg.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -lin-alg.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -lin-alg.o: potential.h minstructure.h writemovie.h rigid.h -lin-alg.o: printGromacsTopology.h globals.h +lin-alg.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +lin-alg.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +lin-alg.o: rigid.h printGromacsTopology.h globals.h minimize.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h minimize.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -minimize.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -minimize.o: potential.h minstructure.h writemovie.h rigid.h -minimize.o: printGromacsTopology.h globals.h +minimize.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +minimize.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +minimize.o: rigid.h printGromacsTopology.h globals.h minstructure.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minstructure.o: minimize.h structcompare.h part.h newtables.h interpolate.h minstructure.o: readmmp.h readxyz.h printers.h dynamics.h jigs.h -minstructure.o: pam5_patterns.h pattern.h potential.h minstructure.h -minstructure.o: writemovie.h rigid.h printGromacsTopology.h globals.h +minstructure.o: amber_patterns.h pam5_patterns.h pattern.h potential.h +minstructure.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h +minstructure.o: globals.h newtables.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h newtables.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -newtables.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -newtables.o: potential.h minstructure.h writemovie.h rigid.h -newtables.o: printGromacsTopology.h globals.h bonds.gen bends.gen +newtables.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +newtables.o: pam5_patterns.h pattern.h potential.h minstructure.h +newtables.o: writemovie.h rigid.h printGromacsTopology.h globals.h bonds.gen +newtables.o: bends.gen pam5_patterns.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h pam5_patterns.o: minimize.h structcompare.h part.h newtables.h interpolate.h pam5_patterns.o: readmmp.h readxyz.h printers.h dynamics.h jigs.h -pam5_patterns.o: pam5_patterns.h pattern.h potential.h minstructure.h -pam5_patterns.o: writemovie.h rigid.h printGromacsTopology.h globals.h +pam5_patterns.o: amber_patterns.h pam5_patterns.h pattern.h potential.h +pam5_patterns.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h +pam5_patterns.o: globals.h part.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h part.o: structcompare.h part.h newtables.h interpolate.h readmmp.h readxyz.h -part.o: printers.h dynamics.h jigs.h pam5_patterns.h pattern.h potential.h -part.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h globals.h +part.o: printers.h dynamics.h jigs.h amber_patterns.h pam5_patterns.h +part.o: pattern.h potential.h minstructure.h writemovie.h rigid.h +part.o: printGromacsTopology.h globals.h pattern.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h pattern.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -pattern.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -pattern.o: potential.h minstructure.h writemovie.h rigid.h -pattern.o: printGromacsTopology.h globals.h +pattern.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +pattern.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +pattern.o: rigid.h printGromacsTopology.h globals.h potential.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h potential.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -potential.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -potential.o: potential.h minstructure.h writemovie.h rigid.h -potential.o: printGromacsTopology.h globals.h +potential.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +potential.o: pam5_patterns.h pattern.h potential.h minstructure.h +potential.o: writemovie.h rigid.h printGromacsTopology.h globals.h printers.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h printers.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -printers.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -printers.o: potential.h minstructure.h writemovie.h rigid.h -printers.o: printGromacsTopology.h globals.h +printers.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +printers.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +printers.o: rigid.h printGromacsTopology.h globals.h printGromacsTopology.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h printGromacsTopology.o: minimize.h structcompare.h part.h newtables.h printGromacsTopology.o: interpolate.h readmmp.h readxyz.h printers.h -printGromacsTopology.o: dynamics.h jigs.h pam5_patterns.h pattern.h -printGromacsTopology.o: potential.h minstructure.h writemovie.h rigid.h -printGromacsTopology.o: printGromacsTopology.h globals.h +printGromacsTopology.o: dynamics.h jigs.h amber_patterns.h pam5_patterns.h +printGromacsTopology.o: pattern.h potential.h minstructure.h writemovie.h +printGromacsTopology.o: rigid.h printGromacsTopology.h globals.h readers.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h readers.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -readers.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -readers.o: potential.h minstructure.h writemovie.h rigid.h -readers.o: printGromacsTopology.h globals.h +readers.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +readers.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +readers.o: rigid.h printGromacsTopology.h globals.h readmmp.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h readmmp.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -readmmp.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -readmmp.o: potential.h minstructure.h writemovie.h rigid.h -readmmp.o: printGromacsTopology.h globals.h +readmmp.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +readmmp.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +readmmp.o: rigid.h printGromacsTopology.h globals.h readxyz.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h readxyz.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -readxyz.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -readxyz.o: potential.h minstructure.h writemovie.h rigid.h -readxyz.o: printGromacsTopology.h globals.h +readxyz.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +readxyz.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +readxyz.o: rigid.h printGromacsTopology.h globals.h rigid.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h rigid.o: structcompare.h part.h newtables.h interpolate.h readmmp.h readxyz.h -rigid.o: printers.h dynamics.h jigs.h pam5_patterns.h pattern.h potential.h -rigid.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h globals.h -rigid.o: rigid-ode.h +rigid.o: printers.h dynamics.h jigs.h amber_patterns.h pam5_patterns.h +rigid.o: pattern.h potential.h minstructure.h writemovie.h rigid.h +rigid.o: printGromacsTopology.h globals.h rigid-ode.h rigid-ode.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h rigid-ode.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -rigid-ode.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -rigid-ode.o: potential.h minstructure.h writemovie.h rigid.h -rigid-ode.o: printGromacsTopology.h globals.h rigid-ode.h +rigid-ode.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +rigid-ode.o: pam5_patterns.h pattern.h potential.h minstructure.h +rigid-ode.o: writemovie.h rigid.h printGromacsTopology.h globals.h +rigid-ode.o: rigid-ode.h sim.o: simhelp.c simulator.h debug.h lin-alg.h allocate.h hashtable.h sim.o: minimize.h structcompare.h part.h newtables.h interpolate.h readmmp.h -sim.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -sim.o: potential.h minstructure.h writemovie.h rigid.h printGromacsTopology.h -sim.o: globals.h version.h +sim.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +sim.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +sim.o: rigid.h printGromacsTopology.h globals.h version.h simhelp.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h simhelp.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -simhelp.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -simhelp.o: potential.h minstructure.h writemovie.h rigid.h -simhelp.o: printGromacsTopology.h globals.h version.h +simhelp.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +simhelp.o: pam5_patterns.h pattern.h potential.h minstructure.h writemovie.h +simhelp.o: rigid.h printGromacsTopology.h globals.h version.h simulator.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h simulator.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -simulator.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -simulator.o: potential.h minstructure.h writemovie.h rigid.h -simulator.o: printGromacsTopology.h globals.h version.h +simulator.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +simulator.o: pam5_patterns.h pattern.h potential.h minstructure.h +simulator.o: writemovie.h rigid.h printGromacsTopology.h globals.h version.h simulator.o: debug.h lin-alg.h allocate.h hashtable.h minimize.h simulator.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -simulator.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h pattern.h -simulator.o: potential.h minstructure.h writemovie.h rigid.h -simulator.o: printGromacsTopology.h globals.h +simulator.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +simulator.o: pam5_patterns.h pattern.h potential.h minstructure.h +simulator.o: writemovie.h rigid.h printGromacsTopology.h globals.h structcompare.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h structcompare.o: minimize.h structcompare.h part.h newtables.h interpolate.h structcompare.o: readmmp.h readxyz.h printers.h dynamics.h jigs.h -structcompare.o: pam5_patterns.h pattern.h potential.h minstructure.h -structcompare.o: writemovie.h rigid.h printGromacsTopology.h globals.h +structcompare.o: amber_patterns.h pam5_patterns.h pattern.h potential.h +structcompare.o: minstructure.h writemovie.h rigid.h printGromacsTopology.h +structcompare.o: globals.h writemovie.o: simulator.h debug.h lin-alg.h allocate.h hashtable.h minimize.h writemovie.o: structcompare.h part.h newtables.h interpolate.h readmmp.h -writemovie.o: readxyz.h printers.h dynamics.h jigs.h pam5_patterns.h -writemovie.o: pattern.h potential.h minstructure.h writemovie.h rigid.h -writemovie.o: printGromacsTopology.h globals.h +writemovie.o: readxyz.h printers.h dynamics.h jigs.h amber_patterns.h +writemovie.o: pam5_patterns.h pattern.h potential.h minstructure.h +writemovie.o: writemovie.h rigid.h printGromacsTopology.h globals.h |