+#!/bin/sh

+OUTFIL=/tmp/NE1_suite_scriptvars_GMX

+GMXSPATH=$0

+echo "GMXSPATH=$GMXSPATH" > $OUTFIL

+GMXPPATH=$1

+echo "GMXPPATH=$GMXPPATH" >> $OUTFIL

+GMXTARGETLOC=$2

+echo "GMXTARGETLOC=$GMXTARGETLOC" >> $OUTFIL

+GMXTARGETVOL=$3

+echo "GMXTARGETVOL=$GMXTARGETVOL" >> $OUTFIL

+#env | grep -v "^_" >> $OUTFIL

+PMTARGETLOC=`grep PMTARGETLOC /tmp/NE1_suite_scriptvars_pm| cut -c 13-`

+su $USER -c "$PMTARGETLOC/pref_modifier.app/Contents/MacOS/pref_modifier -K gromacs_enabled -V True >> /dev/null"

+su $USER -c "$PMTARGETLOC/pref_modifier.app/Contents/MacOS/pref_modifier -K gromacs_path -V \"$GMXTARGETLOC/bin/mdrun\" >> /dev/null"

+su $USER -c "$PMTARGETLOC/pref_modifier.app/Contents/MacOS/pref_modifier -K cpp_enabled -V True >> /dev/null"

+su $USER -c "$PMTARGETLOC/pref_modifier.app/Contents/MacOS/pref_modifier -K cpp_path -V \"$GMXTARGETLOC/mcpp/bin/mcpp\" >> /dev/null"

+

+

+#!/bin/sh

+OUTFIL=/tmp/NE1_suite_scriptvars_NE1

+NESPATH=$0

+echo "NESPATH=$NESPATH" > $OUTFIL

+NEPPATH=$1

+echo "NEPPATH=$NEPPATH" >> $OUTFIL

+NETARGETLOC=$2

+echo "NETARGETLOC=$NETARGETLOC" >> $OUTFIL

+NETARGETVOL=$3

+echo "NETARGETVOL=$NETARGETVOL" >> $OUTFIL

+#env |grep -v "^_" >> $OUTFIL

+#!/bin/sh

+OUTFIL=/tmp/NE1_suite_scriptvars_QMX

+QMXSPATH=$0

+echo "QMXSPATH=$QMXSPATH" > $OUTFIL

+QMXPPATH=$1

+echo "QMXPPATH=$QMXPPATH" >> $OUTFIL

+QMXTARGETLOC=$2

+echo "QMXTARGETLOC=$QMXTARGETLOC" >> $OUTFIL

+QMXTARGETVOL=$3

+echo "QMXTARGETVOL=$QMXTARGETVOL" >> $OUTFIL

+#env | grep -v "^_" >> $OUTFIL

+PMTARGETLOC=`grep PMTARGETLOC /tmp/NE1_suite_scriptvars_pm| cut -c 13-`

+su $USER -c "$PMTARGETLOC/pref_modifier.app/Contents/MacOS/pref_modifier -K qutemol_enabled -V True >> /dev/null"

+su $USER -c "$PMTARGETLOC/pref_modifier.app/Contents/MacOS/pref_modifier -K qutemol_path -V \"$QMXTARGETLOC/QuteMolX.app\" >> /dev/null"

+rm /tmp/NE1_suite_scriptvars*

+#!/bin/sh

+OUTFIL=/tmp/scriptvars_all

+echo "SPATH=$0" > $OUTFIL

+echo "PPATH=$1" >> $OUTFIL

+echo "TARGETLOC=$2" >> $OUTFIL

+echo "TARGETVOL=$3" >> $OUTFIL

+env >> $OUTFIL

+#!/bin/sh

+OUTFIL=/tmp/NE1_suite_scriptvars_pm

+PMSPATH=$0

+echo "PMSPATH=$PMSPATH" > $OUTFIL

+PMPPATH=$1

+echo "PMPPATH=$PMPPATH" >> $OUTFIL

+PMTARGETLOC=$2

+echo "PMTARGETLOC=$PMTARGETLOC" >> $OUTFIL

+PMTARGETVOL=$3

+echo "PMTARGETVOL=$PMTARGETVOL" >> $OUTFIL

+env |grep -v "^_" >> $OUTFIL

+#!/bin/sh -x

+

+# Usage: Run ./buildWinSuite.sh from the Suite directory in packaging.

+

+

+# Set control variable to build packages if they are not build already

+# This will probably be removed later as it was only added for testing

+BUILD_IF_UNBUILT=1

+

+# Set up path variables

+PKNG_DIR=`pwd`

+cd ../..

+TOP_LEVEL=`pwd`

+

+

+# Set up version information

+VERSION_NUM="1.1.1.2"

+RC_NUMBER="0"

+GROMACS_VERSION="3.3.3"

+QUTEMOLX_VERSION="0.5.1"

+

+# Do a basic check for sanity in the build area.

+if [ ! -e "$TOP_LEVEL/cad/src" ]

+then

+ echo "The build directories are not valid"

+ exit 1

+fi

+

+# Check to see if the smaller packages are built

+

+# Start with Pref_Mod since it's easy to build

+cd $TOP_LEVEL

+# this check is to see if we've already run Pref_Mod for this tree

+if [ ! -e ~/MacOSX_Installers/pref_modifier.pkg ]

+then

+ if [ $BUILD_IF_UNBUILT -ne 0 ]

+ then

+# All clear to do the build

+ cd packaging/Pref_Mod

+ ./buildMac.sh || exit 1

+ else

+ echo "Build Pref_Mod before continuing"

+ exit 1

+ fi

+fi

+

+

+# Build section for QuteMolX

+

+if [ ! -e ~/MacOSX_Installers/QuteMolX_$QUTEMOLX_VERSION.pkg ]

+then

+ if [ $BUILD_IF_UNBUILT -ne 0 ]

+ then

+ cd $TOP_LEVEL/cad/plugins/QuteMol/packaging

+ ./buildMac.sh QUTEMOLX_VERSION

+ if [ "$?" != "0" ]

+ then

+ echo "Error in the QuteMolX build, investigate."

+ exit 1

+ fi

+ fi

+fi

+# The build will normally handle this, but if the files used are pre-builds,

+# the build does not store the readme and license. (Needed for Suite)

+#cp $TOP_LEVEL/cad/plugins/QuteMol/packaging/Win32/License.txt /c/QMX_Install || exit 1

+#cp $TOP_LEVEL/cad/plugins/QuteMol/packaging/ReadMe.html /c/QMX_Install || exit 1

+

+# End of build section for QuteMolX

+

+cd $TOP_LEVEL

+

+# Build section for GROMACS

+

+if [ ! -e ~/MacOSX_Installers/GROMACS_$GROMACS_VERSION.pkg ]

+then

+ if [ $BUILD_IF_UNBUILT -ne 0 ]

+ then

+ cd $TOP_LEVEL/cad/plugins/GROMACS/gromacs-$GROMACS_VERSION/packaging

+ ./buildMac.sh $GROMACS_VERSION

+ if [ "$?" != "0" ]

+ then

+ echo "Error in the GROMACS build, investigate."

+ exit 1

+ fi

+ fi

+fi

+# The build will normally handle this, but if the files used are pre-builds,

+# the build does not store the readme and license. (Needed for Suite)

+#cp $TOP_LEVEL/cad/plugins/GROMACS/gromacs-$GROMACS_VERSION/packaging/Win32/License.txt /c/GMX_Install

+#cp $TOP_LEVEL/cad/plugins/GROMACS/gromacs-$GROMACS_VERSION/packaging/ReadMe.html /c/GMX_Install

+

+# End of GROMACS build section

+

+cd $TOP_LEVEL

+

+# Build section for NE1

+

+#Check for an NE1 build

+cd $TOP_LEVEL

+if [ ! -e ~/MacOSX_Installers/NanoEngineer-1_v$VERSION_NUM.pkg ]

+then

+ if [ $BUILD_IF_UNBUILT -ne 0 ]

+ then

+# Set version information for NE1

+ cat packaging/buildMac.sh | sed -e "s:^VERSION_NUM=.*:VERSION_NUM=\\\"$VERSION_NUM\\\":" | sed -e "s:^RC_NUMBER=.*:RC_NUMBER=\\\"$RC_NUMBER\\\":" > packaging/buildMac.sh.tmp

+ mv packaging/buildMac.sh.tmp packaging/buildMac.sh || exit 1

+ cd packaging

+ export CPPFLAGS="-isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.3 -I/usr/local/include -I/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/include"

+ export CFLAGS="-isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.3 -I/usr/local/include -I/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/include"

+ export LDFLAGS="-Wl,-syslibroot,/Developer/SDKs/MacOSX10.4u.sdk -isysroot /Developer/SDKs/MacOSX10.4u.sdk -L/usr/local/lib -L/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib"

+ export CXXFLAGS="-isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.3 -I/usr/local/include -I/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/include"

+ export FFLAGS="-isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.3 -I/usr/local/include -I/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/include"

+ export MACOSX_DEPLOYMENT_TARGET=10.3

+ chmod 755 ./buildMac.sh

+ ./buildMac.sh

+ if [ "$?" != "0" ]

+ then

+ echo "Error in the NE1 Build, investigate"

+ exit 1

+ fi

+ else

+ echo "Build NE1 before continuing"

+ exit 1

+ fi

+fi

+

+cd $TOP_LEVEL

+

+# Made it this far, continue building the suite. Mod the suite installer files

+cd $PKNG_DIR

+cd MacOSX

+sudo rm -rf metapackage

+mkdir metapackage

+mkdir metapackage/packages

+mkdir metapackage/extras

+if [ -e ~/MacOSX_Installers ]

+then

+ cd metapackage/packages

+ sudo cp -R ~/MacOSX_Installers/NanoEngineer-1_v$VERSION_NUM.pkg .

+ sudo mv NanoEngineer-1_v$VERSION_NUM.pkg NanoEngineer-1.pkg

+ sudo cp -R ~/MacOSX_Installers/GROMACS_3.3.3.pkg .

+ sudo mv GROMACS_3.3.3.pkg GROMACS.pkg

+ sudo cp -R ~/MacOSX_Installers/QuteMolX_0.5.1.pkg .

+ sudo mv QuteMolX_0.5.1.pkg QuteMolX.pkg

+ sudo cp -R ~/MacOSX_Installers/pref_modifier.pkg .

+else

+# To be replaced later with something that searches for the pkg files

+ exit 1

+fi

+cd $PKNG_DIR/MacOSX

+sudo rm -rf NanoEngineer-1_Suite

+sudo mkdir NanoEngineer-1_Suite

+sudo rm -rf NE1_Suite.pmdoc

+tar -xzvf NE1_Suite.pmdoc.tar.gz

+sudo /Developer/Applications/Utilities/PackageMaker.app/Contents/MacOS/PackageMaker -o NanoEngineer-1_Suite/NanoEngineer-1_Suite_v$VERSION_NUM.mpkg -d NE1_Suite.pmdoc

+sudo sync

+sudo sudo hdiutil create -srcfolder NanoEngineer-1_Suite -fs HFS+ -format UDZO NanoEngineer-1_Suite_v$VERSION_NUM.dmg

+

+if [ -e ~/MacOSX_Installers ]

+then

+ cd NanoEngineer-1_Suite

+ sudo cp -R NanoEngineer-1_Suite_V$VERSION_NUM.mpkg ~/MacOSX_Installers

+ cd ..

+ sudo cp NanoEngineer-1_Suite_v$VERSION_NUM.dmg ~/MacOSX_Installers

+fi