summaryrefslogtreecommitdiff
path: root/cad/src/dna/commands/DnaStrand/DnaStrand_PropertyManager.py
blob: c835d4b148a05ab924a7cb09950957f367998f51 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
# Copyright 2008 Nanorex, Inc.  See LICENSE file for details. 
"""
DnaStrand_PropertyManager.py

@author: Ninad
@version: $Id$
@copyright: 2008 Nanorex, Inc.  See LICENSE file for details.

Special notes:
- Sequence editor is also created in BuildDna_PropertyManager (of course 
  its a child of that PM) . See if that creates any issues. 
- Copied some methods from BuildDna_PropertyManager. 

"""
from utilities import debug_flags
from utilities.debug import print_compact_stack
from utilities.Comparison import same_vals
from utilities.Log import redmsg

from PyQt4.Qt import SIGNAL
from PyQt4.Qt import QString
from PyQt4.Qt import Qt

from command_support.DnaOrCnt_PropertyManager import DnaOrCnt_PropertyManager

from PM.PM_Constants     import PM_DONE_BUTTON
from PM.PM_Constants     import PM_WHATS_THIS_BUTTON
from PM.PM_LineEdit      import PM_LineEdit
from PM.PM_GroupBox      import PM_GroupBox
from PM.PM_CheckBox      import PM_CheckBox
from PM.PM_SpinBox       import PM_SpinBox
from PM.PM_DoubleSpinBox import PM_DoubleSpinBox

from widgets.prefs_widgets import connect_checkbox_with_boolean_pref
from utilities.prefs_constants import dnaStrandEditCommand_cursorTextCheckBox_changedBases_prefs_key
from utilities.prefs_constants import dnaStrandEditCommand_cursorTextCheckBox_numberOfBases_prefs_key
from utilities.prefs_constants import dnaStrandEditCommand_showCursorTextCheckBox_prefs_key

_superclass = DnaOrCnt_PropertyManager
class DnaStrand_PropertyManager( DnaOrCnt_PropertyManager):
    """
    The DnaStrand_PropertyManager class provides a Property Manager 
    for the DnaStrand_EditCommand.

    @ivar title: The title that appears in the property manager header.
    @type title: str

    @ivar pmName: The name of this property manager. This is used to set
                  the name of the PM_Dialog object via setObjectName().
    @type name: str

    @ivar iconPath: The relative path to the PNG file that contains a
                    22 x 22 icon image that appears in the PM header.
    @type iconPath: str
    """

    title         =  "DnaStrand Properties"
    iconPath      =  "ui/actions/Properties Manager/Strand.png"

    def __init__( self, command ):
        """
        Constructor for the Build DNA property manager.
        """
                
        self.sequenceEditor = None      
        
        self._numberOfBases = 0 
        self._conformation = 'B-DNA'
        self.dnaModel = 'PAM3'
        
        _superclass.__init__( self, command)

        self.showTopRowButtons( PM_DONE_BUTTON | \
                                PM_WHATS_THIS_BUTTON)
        return
    
    def _addGroupBoxes( self ):
        """
        Add group boxes to this PM.
        """        
                
        self._pmGroupBox1 = PM_GroupBox( self, title = "Parameters" )
        self._loadGroupBox1( self._pmGroupBox1 )
        self._displayOptionsGroupBox = PM_GroupBox( self, 
                                                    title = "Display Options" )
        self._loadDisplayOptionsGroupBox( self._displayOptionsGroupBox )
        
        #Sequence Editor. This is NOT a groupbox, needs cleanup. Doing it here 
        #so that the sequence editor gets connected! Perhaps 
        #superclass should define _loadAdditionalWidgets. -- Ninad2008-10-03
        self._loadSequenceEditor()
        return
    
    def _loadGroupBox1(self, pmGroupBox):
        """
        Load widgets in group box 1.
        """
        
        self.nameLineEdit = PM_LineEdit( pmGroupBox,
                         label         =  "Name:",
                         text          =  "",
                         setAsDefault  =  False)
        
        self.numberOfBasesSpinBox = \
            PM_SpinBox( pmGroupBox, 
                        label         =  "Number of bases:", 
                        value         =  self._numberOfBases,
                        setAsDefault  =  False,
                        minimum       =  2,
                        maximum       =  10000 )
        
        self.disableStructHighlightingCheckbox = \
            PM_CheckBox( pmGroupBox,
                         text         = "Don't highlight while editing DNA",
                         widgetColumn  = 0,
                         state        = Qt.Unchecked,
                         setAsDefault = True,
                         spanWidth = True
                         )
        
        #As of 2008-03-31, the properties such as number of bases will be 
        #editable only by using the resize handles.
        self.numberOfBasesSpinBox.setEnabled(False)        
        return
            
    def _loadSequenceEditor(self):
        """
        Temporary code  that shows the Sequence editor ..a doc widget docked
        at the bottom of the mainwindow. The implementation is going to change
        before 'rattleSnake' product release.
        As of 2007-11-20: This feature (sequence editor) is waiting 
        for the ongoing dna model work to complete.
        """
        self.sequenceEditor = self.win.createDnaSequenceEditorIfNeeded() 
        self.sequenceEditor.hide()
        return
        
    def _loadDisplayOptionsGroupBox(self, pmGroupBox):
        """
        Overrides superclass method. 
        Also loads the color chooser widget. 
        """
        self._loadColorChooser(pmGroupBox)
        _superclass._loadDisplayOptionsGroupBox(self, pmGroupBox)
        return
         
    def _connect_showCursorTextCheckBox(self):
        """
        Connect the show cursor text checkbox with user prefs_key.
        Overrides 
        DnaOrCnt_PropertyManager._connect_showCursorTextCheckBox
        """
        connect_checkbox_with_boolean_pref(
            self.showCursorTextCheckBox , 
            dnaStrandEditCommand_showCursorTextCheckBox_prefs_key)
        return


    def _params_for_creating_cursorTextCheckBoxes(self):
        """
        Returns params needed to create various cursor text checkboxes connected
        to prefs_keys  that allow custom cursor texts. 
        @return: A list containing tuples in the following format:
                ('checkBoxTextString' , preference_key). PM_PrefsCheckBoxes 
                uses this data to create checkboxes with the the given names and
                connects them to the provided preference keys. (Note that 
                PM_PrefsCheckBoxes puts thes within a GroupBox)
        @rtype: list
        @see: PM_PrefsCheckBoxes
        @see: self._loadDisplayOptionsGroupBox where this list is used. 
        @see: Superclass method which is overridden here --
        DnaOrCnt_PropertyManager._params_for_creating_cursorTextCheckBoxes()
        """
        params = \
               [  #Format: (" checkbox text", prefs_key)
                  ("Number of bases", 
                   dnaStrandEditCommand_cursorTextCheckBox_numberOfBases_prefs_key),

                  ("Number of bases to be changed",
                   dnaStrandEditCommand_cursorTextCheckBox_changedBases_prefs_key) 
                 ]

        return params
    
        
    def getParameters(self):
        name = self.nameLineEdit.text()
        numberOfBases = self.numberOfBasesSpinBox.value()
        dnaForm  = self._conformation
        dnaModel = self.dnaModel
        color = self._colorChooser.getColor()
              
        return (numberOfBases, 
                dnaForm,
                dnaModel,
                color,
                name
                )
    
    def setParameters(self, params):
        """
        This is usually called when you are editing an existing structure. 
        It also gets called when selecting a new strand (within this command).
        Some property manager ui elements then display the information 
        obtained from the object being edited. 
        TODO:
        - Make this a EditCommand_PM API method? 
        - See also the routines GraphicsMode.setParams or object.setProps
        ..better to name them all in one style?  
        """
        numberOfBases, \
            dnaForm, \
            dnaModel, \
            color, \
            name = params 
        
        if numberOfBases is not None:
            self.numberOfBasesSpinBox.setValue(numberOfBases)
        if dnaForm is not None:
            self._conformation = dnaForm
        if dnaModel is not None:
            self.dnaModel = dnaModel
         
        if color is not None:
            self._colorChooser.setColor(color)
            
        if name:  # Minimal test. Should add a validator. --Mark 2008-12-16
            self.nameLineEdit.setText(name)
        
        # This gets called when we enter the command *and* when selecting a new
        # strand. In either case, we must update the sequence in the sequenece
        # editor. Fixes bug 2951. --Mark 2008-12-16
        if self.command and self.command.hasValidStructure():
            #print "setParameters(): loading sequence in sequence editor for ", name
            self.updateSequence(strand = self.command.struct)
        return
    
    def connect_or_disconnect_signals(self, isConnect):
        """
        Connect or disconnect widget signals sent to their slot methods.
        This can be overridden in subclasses. By default it does nothing.
        @param isConnect: If True the widget will send the signals to the slot 
                          method. 
        @type  isConnect: boolean
        """
        #TODO: This is a temporary fix for a bug. When you invoke a temporary
        # mode Entering such a temporary mode keeps the signals of 
        #PM from the previous mode connected (
        #but while exiting that temporary mode and reentering the 
        #previous mode, it atucally reconnects the signal! This gives rise to 
        #lots  of bugs. This needs more general fix in Temporary mode API. 
        # -- Ninad 2008-01-09 (similar comment exists in MovePropertyManager.py
                
        if isConnect and self.isAlreadyConnected:
            if debug_flags.atom_debug:
                print_compact_stack("warning: attempt to connect widgets"\
                                    "in this PM that are already connected." )
            return 
        
        if not isConnect and self.isAlreadyDisconnected:
            if debug_flags.atom_debug:
                print_compact_stack("warning: attempt to disconnect widgets"\
                                    "in this PM that are already disconnected.")
            return
        
        self.isAlreadyConnected = isConnect
        self.isAlreadyDisconnected = not isConnect
        
        if isConnect:
            change_connect = self.win.connect     
        else:
            change_connect = self.win.disconnect 
          
                
        if self.sequenceEditor:
            self.sequenceEditor.connect_or_disconnect_signals(isConnect)
            
        _superclass.connect_or_disconnect_signals(self, isConnect)
            
        
        change_connect(self.disableStructHighlightingCheckbox, 
                       SIGNAL('stateChanged(int)'), 
                       self.change_struct_highlightPolicy)
        
        change_connect(self.showCursorTextCheckBox, 
                       SIGNAL('stateChanged(int)'), 
                       self._update_state_of_cursorTextGroupBox)
        
        change_connect(self.nameLineEdit,
                       SIGNAL("editingFinished()"),
                       self._nameChanged)
        return
        
    def _update_UI_do_updates(self):
        """
        @see: Command_PropertyManager. _update_UI_do_updates()
        @see: DnaStrand_EditCommand.command_update_UI()
        @see: DnaStrand_EditCommand.hasResizableStructure()
        """
        if not self.command.hasValidStructure():
            print "DnaStrand not a valid structure."
            self._pmGroupBox1.setEnabled(False)
            self._displayOptionsGroupBox.setEnabled(False)
            self.sequenceEditor.updateSequence(strand = " ")
            self.sequenceEditor.setEnabled(False)
            self.nameLineEdit.setText("")
            self.numberOfBasesSpinBox.setValue(0)
            return
        else:
            self._pmGroupBox1.setEnabled(True)
            self._displayOptionsGroupBox.setEnabled(True)
            self.sequenceEditor.setEnabled(True)
            
        isStructResizable, why_not = self.command.hasResizableStructure()
        if not isStructResizable:
            #disable all widgets
            if self._pmGroupBox1.isEnabled():
                self._pmGroupBox1.setEnabled(False)
                msg1 = ("Attention: ") % (self.command.struct.name) 
                msg2 = redmsg("DnaStrand <b>%s</b> is not resizable. Reason: %s" % \
                              (self.command.struct.name, why_not))
                self.updateMessage(msg1 + msg2)
        else:
            if not self._pmGroupBox1.isEnabled():
                self._pmGroupBox1.setEnabled(True)
            msg1 = ("Editing <b>%s</b>. ") % (self.command.struct.name) 
            msg2 = "Use resize handles to resize the strand. "\
                 "Use the <i>Sequence Editor</i> to edit the sequence."
            self.updateMessage(msg1 + msg2)
        return
        
    def close(self):
        """
        Close this property manager. 
        Also sets the name of the self.command's structure to the one 
        displayed in the line edit field.
        @see self.show()
        @see: DnaSegment_EditCommand.setStructureName
        """
        if self.command is not None:
            name = str(self.nameLineEdit.text())
            self.command.setStructureName(name)
            
        if self.sequenceEditor:
            self.sequenceEditor.close()
                            
        _superclass.close(self)
        return
    
    def updateSequence(self, strand = None):
        """
        Public method provided for convenience. If any callers outside of this 
        command need to update the sequence in the sequence editor, they can simply 
        do DnaStrand_ProprtyManager.updateSequence() rather than 
        DnaStrand_ProprtyManager.sequenceEditor.updateSequence()
        @see: Ui_DnaSequenceEditor.updateSequence()
        """
        if self.sequenceEditor:
            self.sequenceEditor.updateSequence(strand = strand)
        return
        
    def change_struct_highlightPolicy(self,checkedState = False):
        """
        Change the 'highlight policy' of the structure being edited 
        (i.e. self.command.struct) . 
        @param checkedState: The checked state of the checkbox that says 
                             'Don't highlight while editing DNA'. So, it 
                             its True, the structure being edited won't get
                             highlighted. 
        @see: DnaStrand.setHighlightPolicy for more comments        
        """        
        if self.command and self.command.hasValidStructure():
            highlight = not checkedState
            self.command.struct.setHighlightPolicy(highlight = highlight)
        return

    def _addWhatsThisText(self):
        """
        Add what's this text. 
        Abstract method.
        """
        pass
    
    def _nameChanged(self): # Added by Mark. 2008-12-16
        """
        Slot for "Name" field. Changes the name of the strand if the user types
        in a new name.
        
        @warning: this lacks a validator. User can type in a name with invalid
                  characters.
        """
        if not self.command.hasValidStructure():
            return
        
        name = str(self.nameLineEdit.text())
        
        if not name: # Minimal test. Should add a validator. Ask Bruce for example validator code somewhere. --Mark 2008-12-16
            if self.command.hasValidStructure():
                self.nameLineEdit.setText(self.command.getStructureName())
                
            return
        
        self.command.setStructureName(name)
        
        self._update_UI_do_updates() # Updates the message box.
        
        return