Added Rosetta to Plug-ins page and hid the NV1 plugin.

author: Mark Sims <mark@nanorex.com> 2008-07-16 13:58:30 +0000
committer: Mark Sims <mark@nanorex.com> 2008-07-16 13:58:30 +0000
commit: efed028ad3f77cabae18fd9864912d75cfea175d (patch)
tree: f170ff7d733de0b8f4f97e7d3bd284b2a58e25a1 /cad/src/ne1_ui/prefs
parent: ba5884b372f503bab187a19ccdcea8bb603c4bbd (diff)
download: nanoengineer-theirix-efed028ad3f77cabae18fd9864912d75cfea175d.tar.gz
nanoengineer-theirix-efed028ad3f77cabae18fd9864912d75cfea175d.zip
3 files changed, 967 insertions, 775 deletions
diff --git a/cad/src/ne1_ui/prefs/Preferences.py b/cad/src/ne1_ui/prefs/Preferences.py
index bf96a90b7..edcc7b888 100644
--- a/cad/src/ne1_ui/prefs/Preferences.py
+++ b/cad/src/ne1_ui/prefs/Preferences.py
@@ -74,6 +74,10 @@ from utilities.prefs_constants import gromacs_enabled_prefs_key
 from utilities.prefs_constants import gromacs_path_prefs_key
 from utilities.prefs_constants import cpp_enabled_prefs_key
 from utilities.prefs_constants import cpp_path_prefs_key
+from utilities.prefs_constants import rosetta_enabled_prefs_key
+from utilities.prefs_constants import rosetta_path_prefs_key
+from utilities.prefs_constants import rosetta_database_enabled_prefs_key
+from utilities.prefs_constants import rosetta_dbdir_prefs_key
 from utilities.prefs_constants import nv1_enabled_prefs_key
 from utilities.prefs_constants import nv1_path_prefs_key
 from utilities.prefs_constants import startupGlobalDisplayStyle_prefs_key
@@ -1221,6 +1225,16 @@ class Preferences(QDialog, Ui_PreferencesDialog):
         self.connect(self.cpp_path_lineedit, SIGNAL("textEdited(const QString&)"), self.set_cpp_path)
         self.connect(self.cpp_choose_btn, SIGNAL("clicked()"), self.choose_cpp_path)
 
+        # Rosetta signal-slots connections.
+        self.connect(self.rosetta_checkbox, SIGNAL("toggled(bool)"), self.enable_rosetta)
+        self.connect(self.rosetta_path_lineedit, SIGNAL("textEdited(const QString&)"), self.set_rosetta_path)
+        self.connect(self.rosetta_choose_btn, SIGNAL("clicked()"), self.choose_rosetta_path)
+        
+        # Rosetta database signal-slots connections.
+        self.connect(self.rosetta_db_checkbox, SIGNAL("toggled(bool)"), self.enable_rosetta_db)
+        self.connect(self.rosetta_db_path_lineedit, SIGNAL("textEdited(const QString&)"), self.set_rosetta_db_path)
+        self.connect(self.rosetta_db_choose_btn, SIGNAL("clicked()"), self.choose_rosetta_db_path)
+        
         # NanoVision-1 signal-slots connections.
         self.connect(self.nv1_checkbox, SIGNAL("toggled(bool)"), self.enable_nv1)
         self.connect(self.nv1_path_lineedit, SIGNAL("textEdited(const QString&)"), self.set_nv1_path)
@@ -1327,22 +1341,48 @@ class Preferences(QDialog, Ui_PreferencesDialog):
         been added but not fully implemented. It is also possible to
         show hidden widgets that have a debug pref set to enable them.
         """
-        widgetList = [self.nanohive_lbl,
-                      self.nanohive_checkbox,
-                      self.nanohive_path_lineedit,
-                      self.nanohive_choose_btn,
-                      self.gamess_checkbox,
-                      self.gamess_lbl,
-                      self.gamess_path_lineedit,
-                      self.gamess_choose_btn]
-
-        for widget in widgetList:
+        gms_and_esp_widgetList = [self.nanohive_lbl,
+                                  self.nanohive_checkbox,
+                                  self.nanohive_path_lineedit,
+                                  self.nanohive_choose_btn,
+                                  self.gamess_checkbox,
+                                  self.gamess_lbl,
+                                  self.gamess_path_lineedit,
+                                  self.gamess_choose_btn]
+        
+        for widget in gms_and_esp_widgetList:
             if debug_pref("Show GAMESS and ESP Image UI options",
                           Choice_boolean_False,
                           prefs_key = True):
                 widget.show()
             else:
                 widget.hide()
+        
+        # NanoVision-1 
+        nv1_widgetList = [self.nv1_checkbox,
+                          self.nv1_label,
+                          self.nv1_path_lineedit,
+                          self.nv1_choose_btn]
+        
+        for widget in nv1_widgetList:
+            widget.hide()
+        
+        # Rosetta 
+        rosetta_widgetList = [self.rosetta_checkbox,
+                              self.rosetta_label,
+                              self.rosetta_path_lineedit,
+                              self.rosetta_choose_btn,
+                              self.rosetta_db_checkbox,
+                              self.rosetta_db_label,
+                              self.rosetta_db_path_lineedit,
+                              self.rosetta_db_choose_btn]
+
+        from protein.model.Protein import enableProteins
+        for widget in rosetta_widgetList:
+            if enableProteins:
+                widget.show()
+            else:
+                widget.hide()
         return
 
     # caption_prefix slot methods [#e should probably refile these with other slot methods?]
@@ -2881,7 +2921,7 @@ class Preferences(QDialog, Ui_PreferencesDialog):
 
     def enable_nv1(self, enable = True):
         """
-        If True, NV1 path is set in Preferences>Plug-ins
+        If True, NV1 path is set in Preferences > Plug-ins
 
         @param enable: Is the path set?
         @type  enable: bool
@@ -2912,6 +2952,114 @@ class Preferences(QDialog, Ui_PreferencesDialog):
             #self.nv1_path_lineedit.setText("")
             #env.prefs[nv1_path_prefs_key] = ''
             env.prefs[nv1_enabled_prefs_key] = False
+        return
+    
+    # Rosetta slots #######################################
+
+    def choose_rosetta_path(self):
+        """
+        Slot for Rosetta path "Choose" button.
+        """
+
+        rosetta_executable = get_filename_and_save_in_prefs(self,
+                                                        rosetta_path_prefs_key,
+                                                        'Choose Rosetta Executable')
+
+        if rosetta_executable:
+            self.rosetta_path_lineedit.setText(env.prefs[rosetta_path_prefs_key])
+
+    def set_rosetta_path(self, newValue):
+        """
+        Slot for Rosetta path line editor.
+        """
+        env.prefs[rosetta_path_prefs_key] = str_or_unicode(newValue)
+        return
+
+    def enable_rosetta(self, enable = True):
+        """
+        If True, rosetta path is set in Preferences > Plug-ins
+
+        @param enable: Is the path set?
+        @type  enable: bool
+        """
+
+        state = self.rosetta_checkbox.checkState()
+        if enable:
+            if (state != Qt.Checked):
+                self.rosetta_checkbox.setCheckState(Qt.Checked)
+            self.rosetta_path_lineedit.setEnabled(True)
+            self.rosetta_choose_btn.setEnabled(True)
+            env.prefs[rosetta_enabled_prefs_key] = True
+
+            # Sets the rosetta (executable) path to the standard location, if it exists.
+            if not env.prefs[rosetta_path_prefs_key]:
+                env.prefs[rosetta_path_prefs_key] = get_default_plugin_path( \
+                    "C:\\Rosetta\\rosetta.exe", \
+                    "/Users/marksims/Nanorex/Rosetta/rosetta++/rosetta.mactel", \
+                    "/usr/local/Rosetta/Rosetta")
+
+            self.rosetta_path_lineedit.setText(env.prefs[rosetta_path_prefs_key])
+
+        else:
+            if (state != Qt.Unchecked):
+                self.rosetta_checkbox.setCheckState(Qt.Unchecked)
+            self.rosetta_path_lineedit.setEnabled(False)
+            self.rosetta_choose_btn.setEnabled(False)
+            env.prefs[rosetta_enabled_prefs_key] = False
+        return
+    
+    # Rosetta DB slots #######################################
+    
+    def choose_rosetta_db_path(self):
+        """
+        Slot for Rosetta DB path "Choose" button.
+        """
+
+        rosetta_db_executable = get_filename_and_save_in_prefs(self,
+                                                        rosetta_dbdir_prefs_key,
+                                                        'Choose Rosetta database directory')
+
+        if rosetta_db_executable:
+            self.rosetta_db_path_lineedit.setText(env.prefs[rosetta_db_path_prefs_key])
+
+    def set_rosetta_db_path(self, newValue):
+        """
+        Slot for Rosetta db path line editor.
+        """
+        env.prefs[rosetta_dbdir_prefs_key] = str_or_unicode(newValue)
+
+    def enable_rosetta_db(self, enable = True):
+        """
+        If True, rosetta db path is set in Preferences > Plug-ins
+
+        @param enable: Is the path set?
+        @type  enable: bool
+        """
+
+        state = self.rosetta_db_checkbox.checkState()
+        if enable:
+            if (state != Qt.Checked):
+                self.rosetta_db_checkbox.setCheckState(Qt.Checked)
+            self.rosetta_db_path_lineedit.setEnabled(True)
+            self.rosetta_db_choose_btn.setEnabled(True)
+            env.prefs[rosetta_database_enabled_prefs_key] = True
+
+            # Sets the rosetta (executable) path to the standard location, if it exists.
+            if not env.prefs[rosetta_dbdir_prefs_key]:
+                env.prefs[rosetta_dbdir_prefs_key] = get_default_plugin_path( \
+                    "C:\\Rosetta\\rosetta_database", \
+                    "/Users/marksims/Nanorex/Rosetta/Rosetta_database", \
+                    "/usr/local/Rosetta/Rosetta_database")
+
+            self.rosetta_db_path_lineedit.setText(env.prefs[rosetta_dbdir_prefs_key])
+
+        else:
+            if (state != Qt.Unchecked):
+                self.rosetta_db_checkbox.setCheckState(Qt.Unchecked)
+            self.rosetta_db_path_lineedit.setEnabled(False)
+            self.rosetta_db_choose_btn.setEnabled(False)
+            env.prefs[rosetta_database_enabled_prefs_key] = False
+        return
 
     # QuteMolX slots #######################################
 
diff --git a/cad/src/ne1_ui/prefs/PreferencesDialog.py b/cad/src/ne1_ui/prefs/PreferencesDialog.py
index 918698d36..305a7baa4 100644
--- a/cad/src/ne1_ui/prefs/PreferencesDialog.py
+++ b/cad/src/ne1_ui/prefs/PreferencesDialog.py
@@ -2,7 +2,7 @@
 
 # Form implementation generated from reading ui file 'PreferencesDialog.ui'
 #
-# Created: Tue Jul 08 19:15:14 2008
+# Created: Wed Jul 16 00:54:05 2008
 #      by: PyQt4 UI code generator 4.3.3
 #
 # WARNING! All changes made in this file will be lost!
@@ -2367,147 +2367,148 @@ class Ui_PreferencesDialog(object):
         self.Plugins = QtGui.QWidget()
         self.Plugins.setObjectName("Plugins")
 
-        self.gridlayout33 = QtGui.QGridLayout(self.Plugins)
-        self.gridlayout33.setMargin(9)
-        self.gridlayout33.setSpacing(6)
-        self.gridlayout33.setObjectName("gridlayout33")
-
-        spacerItem59 = QtGui.QSpacerItem(20,218,QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Expanding)
-        self.gridlayout33.addItem(spacerItem59,1,0,1,1)
+        self.vboxlayout38 = QtGui.QVBoxLayout(self.Plugins)
+        self.vboxlayout38.setObjectName("vboxlayout38")
 
         self.file_locations_grp = QtGui.QGroupBox(self.Plugins)
         self.file_locations_grp.setObjectName("file_locations_grp")
 
-        self.gridlayout34 = QtGui.QGridLayout(self.file_locations_grp)
-        self.gridlayout34.setMargin(2)
-        self.gridlayout34.setSpacing(2)
-        self.gridlayout34.setObjectName("gridlayout34")
-
-        self.qutemol_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.qutemol_path_lineedit.setEnabled(False)
-        self.qutemol_path_lineedit.setObjectName("qutemol_path_lineedit")
-        self.gridlayout34.addWidget(self.qutemol_path_lineedit,0,1,1,1)
-
-        self.nanohive_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.nanohive_path_lineedit.setEnabled(False)
-        self.nanohive_path_lineedit.setObjectName("nanohive_path_lineedit")
-        self.gridlayout34.addWidget(self.nanohive_path_lineedit,1,1,1,1)
-
-        self.povray_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.povray_path_lineedit.setEnabled(False)
-        self.povray_path_lineedit.setMaximumSize(QtCore.QSize(32767,32767))
-        self.povray_path_lineedit.setMaxLength(32767)
-        self.povray_path_lineedit.setObjectName("povray_path_lineedit")
-        self.gridlayout34.addWidget(self.povray_path_lineedit,2,1,1,1)
-
-        self.megapov_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.megapov_path_lineedit.setEnabled(False)
-        self.megapov_path_lineedit.setMaximumSize(QtCore.QSize(32767,32767))
-        self.megapov_path_lineedit.setMaxLength(32767)
-        self.megapov_path_lineedit.setObjectName("megapov_path_lineedit")
-        self.gridlayout34.addWidget(self.megapov_path_lineedit,3,1,1,1)
-
-        self.povdir_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.povdir_lineedit.setEnabled(False)
-        self.povdir_lineedit.setObjectName("povdir_lineedit")
-        self.gridlayout34.addWidget(self.povdir_lineedit,4,1,1,1)
-
-        self.gamess_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.gamess_path_lineedit.setEnabled(False)
-        self.gamess_path_lineedit.setMaximumSize(QtCore.QSize(32767,32767))
-        self.gamess_path_lineedit.setMaxLength(32767)
-        self.gamess_path_lineedit.setObjectName("gamess_path_lineedit")
-        self.gridlayout34.addWidget(self.gamess_path_lineedit,5,1,1,1)
-
-        self.gromacs_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.gromacs_path_lineedit.setEnabled(False)
-        self.gromacs_path_lineedit.setObjectName("gromacs_path_lineedit")
-        self.gridlayout34.addWidget(self.gromacs_path_lineedit,6,1,1,1)
-
-        self.nv1_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.nv1_path_lineedit.setEnabled(False)
-        self.nv1_path_lineedit.setObjectName("nv1_path_lineedit")
-        self.gridlayout34.addWidget(self.nv1_path_lineedit,8,1,1,1)
-
-        self.cpp_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
-        self.cpp_path_lineedit.setEnabled(False)
-        self.cpp_path_lineedit.setObjectName("cpp_path_lineedit")
-        self.gridlayout34.addWidget(self.cpp_path_lineedit,7,1,1,1)
+        self.gridlayout33 = QtGui.QGridLayout(self.file_locations_grp)
+        self.gridlayout33.setMargin(4)
+        self.gridlayout33.setSpacing(2)
+        self.gridlayout33.setObjectName("gridlayout33")
 
         self.hboxlayout56 = QtGui.QHBoxLayout()
         self.hboxlayout56.setSpacing(0)
         self.hboxlayout56.setMargin(0)
         self.hboxlayout56.setObjectName("hboxlayout56")
 
-        self.nv1_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.nv1_checkbox.setObjectName("nv1_checkbox")
-        self.hboxlayout56.addWidget(self.nv1_checkbox)
+        self.qutemol_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.qutemol_checkbox.setEnabled(True)
+        self.qutemol_checkbox.setObjectName("qutemol_checkbox")
+        self.hboxlayout56.addWidget(self.qutemol_checkbox)
 
-        self.nv1_label = QtGui.QLabel(self.file_locations_grp)
-        self.nv1_label.setObjectName("nv1_label")
-        self.hboxlayout56.addWidget(self.nv1_label)
-        self.gridlayout34.addLayout(self.hboxlayout56,8,0,1,1)
+        self.qutemol_lbl = QtGui.QLabel(self.file_locations_grp)
+        self.qutemol_lbl.setEnabled(True)
 
-        self.nv1_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.nv1_choose_btn.setEnabled(False)
-        self.nv1_choose_btn.setObjectName("nv1_choose_btn")
-        self.gridlayout34.addWidget(self.nv1_choose_btn,8,2,1,1)
+        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
+        sizePolicy.setHorizontalStretch(0)
+        sizePolicy.setVerticalStretch(0)
+        sizePolicy.setHeightForWidth(self.qutemol_lbl.sizePolicy().hasHeightForWidth())
+        self.qutemol_lbl.setSizePolicy(sizePolicy)
+        self.qutemol_lbl.setMinimumSize(QtCore.QSize(60,0))
+        self.qutemol_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
+        self.qutemol_lbl.setObjectName("qutemol_lbl")
+        self.hboxlayout56.addWidget(self.qutemol_lbl)
+        self.gridlayout33.addLayout(self.hboxlayout56,0,0,1,1)
 
-        self.gromacs_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.gromacs_choose_btn.setEnabled(False)
-        self.gromacs_choose_btn.setObjectName("gromacs_choose_btn")
-        self.gridlayout34.addWidget(self.gromacs_choose_btn,6,2,1,1)
+        self.qutemol_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.qutemol_path_lineedit.setEnabled(False)
+        self.qutemol_path_lineedit.setObjectName("qutemol_path_lineedit")
+        self.gridlayout33.addWidget(self.qutemol_path_lineedit,0,1,1,1)
+
+        self.qutemol_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.qutemol_choose_btn.setObjectName("qutemol_choose_btn")
+        self.gridlayout33.addWidget(self.qutemol_choose_btn,0,2,1,1)
 
         self.hboxlayout57 = QtGui.QHBoxLayout()
         self.hboxlayout57.setSpacing(0)
         self.hboxlayout57.setMargin(0)
         self.hboxlayout57.setObjectName("hboxlayout57")
 
-        self.gromacs_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.gromacs_checkbox.setObjectName("gromacs_checkbox")
-        self.hboxlayout57.addWidget(self.gromacs_checkbox)
+        self.nanohive_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.nanohive_checkbox.setEnabled(True)
+        self.nanohive_checkbox.setObjectName("nanohive_checkbox")
+        self.hboxlayout57.addWidget(self.nanohive_checkbox)
 
-        self.gromacs_label = QtGui.QLabel(self.file_locations_grp)
-        self.gromacs_label.setObjectName("gromacs_label")
-        self.hboxlayout57.addWidget(self.gromacs_label)
-        self.gridlayout34.addLayout(self.hboxlayout57,6,0,1,1)
+        self.nanohive_lbl = QtGui.QLabel(self.file_locations_grp)
+        self.nanohive_lbl.setEnabled(True)
+
+        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
+        sizePolicy.setHorizontalStretch(0)
+        sizePolicy.setVerticalStretch(0)
+        sizePolicy.setHeightForWidth(self.nanohive_lbl.sizePolicy().hasHeightForWidth())
+        self.nanohive_lbl.setSizePolicy(sizePolicy)
+        self.nanohive_lbl.setMinimumSize(QtCore.QSize(60,0))
+        self.nanohive_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
+        self.nanohive_lbl.setObjectName("nanohive_lbl")
+        self.hboxlayout57.addWidget(self.nanohive_lbl)
+        self.gridlayout33.addLayout(self.hboxlayout57,1,0,1,1)
+
+        self.nanohive_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.nanohive_path_lineedit.setEnabled(False)
+        self.nanohive_path_lineedit.setObjectName("nanohive_path_lineedit")
+        self.gridlayout33.addWidget(self.nanohive_path_lineedit,1,1,1,1)
+
+        self.nanohive_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.nanohive_choose_btn.setObjectName("nanohive_choose_btn")
+        self.gridlayout33.addWidget(self.nanohive_choose_btn,1,2,1,1)
 
         self.hboxlayout58 = QtGui.QHBoxLayout()
         self.hboxlayout58.setSpacing(0)
         self.hboxlayout58.setMargin(0)
         self.hboxlayout58.setObjectName("hboxlayout58")
 
-        self.cpp_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.cpp_checkbox.setObjectName("cpp_checkbox")
-        self.hboxlayout58.addWidget(self.cpp_checkbox)
+        self.povray_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.povray_checkbox.setObjectName("povray_checkbox")
+        self.hboxlayout58.addWidget(self.povray_checkbox)
 
-        self.cpp_label = QtGui.QLabel(self.file_locations_grp)
-        self.cpp_label.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
-        self.cpp_label.setObjectName("cpp_label")
-        self.hboxlayout58.addWidget(self.cpp_label)
-        self.gridlayout34.addLayout(self.hboxlayout58,7,0,1,1)
+        self.povray_lbl = QtGui.QLabel(self.file_locations_grp)
+
+        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
+        sizePolicy.setHorizontalStretch(0)
+        sizePolicy.setVerticalStretch(0)
+        sizePolicy.setHeightForWidth(self.povray_lbl.sizePolicy().hasHeightForWidth())
+        self.povray_lbl.setSizePolicy(sizePolicy)
+        self.povray_lbl.setMinimumSize(QtCore.QSize(60,0))
+        self.povray_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
+        self.povray_lbl.setObjectName("povray_lbl")
+        self.hboxlayout58.addWidget(self.povray_lbl)
+        self.gridlayout33.addLayout(self.hboxlayout58,2,0,1,1)
+
+        self.povray_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.povray_path_lineedit.setEnabled(False)
+        self.povray_path_lineedit.setMaximumSize(QtCore.QSize(32767,32767))
+        self.povray_path_lineedit.setMaxLength(32767)
+        self.povray_path_lineedit.setObjectName("povray_path_lineedit")
+        self.gridlayout33.addWidget(self.povray_path_lineedit,2,1,1,1)
+
+        self.povray_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.povray_choose_btn.setObjectName("povray_choose_btn")
+        self.gridlayout33.addWidget(self.povray_choose_btn,2,2,1,1)
 
         self.hboxlayout59 = QtGui.QHBoxLayout()
         self.hboxlayout59.setSpacing(0)
         self.hboxlayout59.setMargin(0)
         self.hboxlayout59.setObjectName("hboxlayout59")
 
-        self.gamess_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.gamess_checkbox.setObjectName("gamess_checkbox")
-        self.hboxlayout59.addWidget(self.gamess_checkbox)
+        self.megapov_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.megapov_checkbox.setObjectName("megapov_checkbox")
+        self.hboxlayout59.addWidget(self.megapov_checkbox)
 
-        self.gamess_lbl = QtGui.QLabel(self.file_locations_grp)
+        self.megapov_lbl = QtGui.QLabel(self.file_locations_grp)
 
         sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.gamess_lbl.sizePolicy().hasHeightForWidth())
-        self.gamess_lbl.setSizePolicy(sizePolicy)
-        self.gamess_lbl.setMinimumSize(QtCore.QSize(60,0))
-        self.gamess_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
-        self.gamess_lbl.setObjectName("gamess_lbl")
-        self.hboxlayout59.addWidget(self.gamess_lbl)
-        self.gridlayout34.addLayout(self.hboxlayout59,5,0,1,1)
+        sizePolicy.setHeightForWidth(self.megapov_lbl.sizePolicy().hasHeightForWidth())
+        self.megapov_lbl.setSizePolicy(sizePolicy)
+        self.megapov_lbl.setMinimumSize(QtCore.QSize(60,0))
+        self.megapov_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
+        self.megapov_lbl.setObjectName("megapov_lbl")
+        self.hboxlayout59.addWidget(self.megapov_lbl)
+        self.gridlayout33.addLayout(self.hboxlayout59,3,0,1,1)
+
+        self.megapov_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.megapov_path_lineedit.setEnabled(False)
+        self.megapov_path_lineedit.setMaximumSize(QtCore.QSize(32767,32767))
+        self.megapov_path_lineedit.setMaxLength(32767)
+        self.megapov_path_lineedit.setObjectName("megapov_path_lineedit")
+        self.gridlayout33.addWidget(self.megapov_path_lineedit,3,1,1,1)
+
+        self.megapov_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.megapov_choose_btn.setObjectName("megapov_choose_btn")
+        self.gridlayout33.addWidget(self.megapov_choose_btn,3,2,1,1)
 
         self.hboxlayout60 = QtGui.QHBoxLayout()
         self.hboxlayout60.setSpacing(2)
@@ -2526,365 +2527,393 @@ class Ui_PreferencesDialog(object):
         self.povdir_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.povdir_lbl.setObjectName("povdir_lbl")
         self.hboxlayout60.addWidget(self.povdir_lbl)
-        self.gridlayout34.addLayout(self.hboxlayout60,4,0,1,1)
+        self.gridlayout33.addLayout(self.hboxlayout60,4,0,1,1)
+
+        self.povdir_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.povdir_lineedit.setEnabled(False)
+        self.povdir_lineedit.setObjectName("povdir_lineedit")
+        self.gridlayout33.addWidget(self.povdir_lineedit,4,1,1,1)
+
+        self.povdir_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.povdir_choose_btn.setObjectName("povdir_choose_btn")
+        self.gridlayout33.addWidget(self.povdir_choose_btn,4,2,1,1)
 
         self.hboxlayout61 = QtGui.QHBoxLayout()
         self.hboxlayout61.setSpacing(0)
         self.hboxlayout61.setMargin(0)
         self.hboxlayout61.setObjectName("hboxlayout61")
 
-        self.megapov_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.megapov_checkbox.setObjectName("megapov_checkbox")
-        self.hboxlayout61.addWidget(self.megapov_checkbox)
+        self.gamess_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.gamess_checkbox.setObjectName("gamess_checkbox")
+        self.hboxlayout61.addWidget(self.gamess_checkbox)
 
-        self.megapov_lbl = QtGui.QLabel(self.file_locations_grp)
+        self.gamess_lbl = QtGui.QLabel(self.file_locations_grp)
 
         sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.megapov_lbl.sizePolicy().hasHeightForWidth())
-        self.megapov_lbl.setSizePolicy(sizePolicy)
-        self.megapov_lbl.setMinimumSize(QtCore.QSize(60,0))
-        self.megapov_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
-        self.megapov_lbl.setObjectName("megapov_lbl")
-        self.hboxlayout61.addWidget(self.megapov_lbl)
-        self.gridlayout34.addLayout(self.hboxlayout61,3,0,1,1)
+        sizePolicy.setHeightForWidth(self.gamess_lbl.sizePolicy().hasHeightForWidth())
+        self.gamess_lbl.setSizePolicy(sizePolicy)
+        self.gamess_lbl.setMinimumSize(QtCore.QSize(60,0))
+        self.gamess_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
+        self.gamess_lbl.setObjectName("gamess_lbl")
+        self.hboxlayout61.addWidget(self.gamess_lbl)
+        self.gridlayout33.addLayout(self.hboxlayout61,5,0,1,1)
+
+        self.gamess_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.gamess_path_lineedit.setEnabled(False)
+        self.gamess_path_lineedit.setMaximumSize(QtCore.QSize(32767,32767))
+        self.gamess_path_lineedit.setMaxLength(32767)
+        self.gamess_path_lineedit.setObjectName("gamess_path_lineedit")
+        self.gridlayout33.addWidget(self.gamess_path_lineedit,5,1,1,1)
+
+        self.gamess_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.gamess_choose_btn.setObjectName("gamess_choose_btn")
+        self.gridlayout33.addWidget(self.gamess_choose_btn,5,2,1,1)
 
         self.hboxlayout62 = QtGui.QHBoxLayout()
         self.hboxlayout62.setSpacing(0)
         self.hboxlayout62.setMargin(0)
         self.hboxlayout62.setObjectName("hboxlayout62")
 
-        self.povray_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.povray_checkbox.setObjectName("povray_checkbox")
-        self.hboxlayout62.addWidget(self.povray_checkbox)
+        self.gromacs_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.gromacs_checkbox.setObjectName("gromacs_checkbox")
+        self.hboxlayout62.addWidget(self.gromacs_checkbox)
 
-        self.povray_lbl = QtGui.QLabel(self.file_locations_grp)
+        self.gromacs_label = QtGui.QLabel(self.file_locations_grp)
+        self.gromacs_label.setObjectName("gromacs_label")
+        self.hboxlayout62.addWidget(self.gromacs_label)
+        self.gridlayout33.addLayout(self.hboxlayout62,6,0,1,1)
 
-        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
-        sizePolicy.setHorizontalStretch(0)
-        sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.povray_lbl.sizePolicy().hasHeightForWidth())
-        self.povray_lbl.setSizePolicy(sizePolicy)
-        self.povray_lbl.setMinimumSize(QtCore.QSize(60,0))
-        self.povray_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
-        self.povray_lbl.setObjectName("povray_lbl")
-        self.hboxlayout62.addWidget(self.povray_lbl)
-        self.gridlayout34.addLayout(self.hboxlayout62,2,0,1,1)
+        self.gromacs_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.gromacs_path_lineedit.setEnabled(False)
+        self.gromacs_path_lineedit.setObjectName("gromacs_path_lineedit")
+        self.gridlayout33.addWidget(self.gromacs_path_lineedit,6,1,1,1)
+
+        self.gromacs_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.gromacs_choose_btn.setObjectName("gromacs_choose_btn")
+        self.gridlayout33.addWidget(self.gromacs_choose_btn,6,2,1,1)
 
         self.hboxlayout63 = QtGui.QHBoxLayout()
         self.hboxlayout63.setSpacing(0)
         self.hboxlayout63.setMargin(0)
         self.hboxlayout63.setObjectName("hboxlayout63")
 
-        self.nanohive_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.nanohive_checkbox.setEnabled(True)
-        self.nanohive_checkbox.setObjectName("nanohive_checkbox")
-        self.hboxlayout63.addWidget(self.nanohive_checkbox)
+        self.cpp_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.cpp_checkbox.setObjectName("cpp_checkbox")
+        self.hboxlayout63.addWidget(self.cpp_checkbox)
 
-        self.nanohive_lbl = QtGui.QLabel(self.file_locations_grp)
-        self.nanohive_lbl.setEnabled(True)
+        self.cpp_label = QtGui.QLabel(self.file_locations_grp)
+        self.cpp_label.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
+        self.cpp_label.setObjectName("cpp_label")
+        self.hboxlayout63.addWidget(self.cpp_label)
+        self.gridlayout33.addLayout(self.hboxlayout63,7,0,1,1)
 
-        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
-        sizePolicy.setHorizontalStretch(0)
-        sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.nanohive_lbl.sizePolicy().hasHeightForWidth())
-        self.nanohive_lbl.setSizePolicy(sizePolicy)
-        self.nanohive_lbl.setMinimumSize(QtCore.QSize(60,0))
-        self.nanohive_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
-        self.nanohive_lbl.setObjectName("nanohive_lbl")
-        self.hboxlayout63.addWidget(self.nanohive_lbl)
-        self.gridlayout34.addLayout(self.hboxlayout63,1,0,1,1)
+        self.cpp_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.cpp_path_lineedit.setEnabled(False)
+        self.cpp_path_lineedit.setObjectName("cpp_path_lineedit")
+        self.gridlayout33.addWidget(self.cpp_path_lineedit,7,1,1,1)
+
+        self.cpp_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.cpp_choose_btn.setObjectName("cpp_choose_btn")
+        self.gridlayout33.addWidget(self.cpp_choose_btn,7,2,1,1)
 
         self.hboxlayout64 = QtGui.QHBoxLayout()
         self.hboxlayout64.setSpacing(0)
         self.hboxlayout64.setMargin(0)
         self.hboxlayout64.setObjectName("hboxlayout64")
 
-        self.qutemol_checkbox = QtGui.QCheckBox(self.file_locations_grp)
-        self.qutemol_checkbox.setEnabled(True)
-        self.qutemol_checkbox.setObjectName("qutemol_checkbox")
-        self.hboxlayout64.addWidget(self.qutemol_checkbox)
+        self.nv1_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.nv1_checkbox.setObjectName("nv1_checkbox")
+        self.hboxlayout64.addWidget(self.nv1_checkbox)
 
-        self.qutemol_lbl = QtGui.QLabel(self.file_locations_grp)
-        self.qutemol_lbl.setEnabled(True)
+        self.nv1_label = QtGui.QLabel(self.file_locations_grp)
+        self.nv1_label.setObjectName("nv1_label")
+        self.hboxlayout64.addWidget(self.nv1_label)
+        self.gridlayout33.addLayout(self.hboxlayout64,10,0,1,1)
 
-        sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Preferred)
-        sizePolicy.setHorizontalStretch(0)
-        sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.qutemol_lbl.sizePolicy().hasHeightForWidth())
-        self.qutemol_lbl.setSizePolicy(sizePolicy)
-        self.qutemol_lbl.setMinimumSize(QtCore.QSize(60,0))
-        self.qutemol_lbl.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
-        self.qutemol_lbl.setObjectName("qutemol_lbl")
-        self.hboxlayout64.addWidget(self.qutemol_lbl)
-        self.gridlayout34.addLayout(self.hboxlayout64,0,0,1,1)
+        self.nv1_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.nv1_path_lineedit.setEnabled(False)
+        self.nv1_path_lineedit.setObjectName("nv1_path_lineedit")
+        self.gridlayout33.addWidget(self.nv1_path_lineedit,10,1,1,1)
 
-        self.cpp_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.cpp_choose_btn.setEnabled(False)
-        self.cpp_choose_btn.setObjectName("cpp_choose_btn")
-        self.gridlayout34.addWidget(self.cpp_choose_btn,7,2,1,1)
+        self.nv1_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.nv1_choose_btn.setObjectName("nv1_choose_btn")
+        self.gridlayout33.addWidget(self.nv1_choose_btn,10,2,1,1)
 
-        self.qutemol_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.qutemol_choose_btn.setEnabled(False)
-        self.qutemol_choose_btn.setAutoDefault(False)
-        self.qutemol_choose_btn.setObjectName("qutemol_choose_btn")
-        self.gridlayout34.addWidget(self.qutemol_choose_btn,0,2,1,1)
+        self.hboxlayout65 = QtGui.QHBoxLayout()
+        self.hboxlayout65.setSpacing(0)
+        self.hboxlayout65.setMargin(0)
+        self.hboxlayout65.setObjectName("hboxlayout65")
 
-        self.povray_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.povray_choose_btn.setEnabled(False)
-        self.povray_choose_btn.setAutoDefault(False)
-        self.povray_choose_btn.setObjectName("povray_choose_btn")
-        self.gridlayout34.addWidget(self.povray_choose_btn,2,2,1,1)
+        self.rosetta_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.rosetta_checkbox.setObjectName("rosetta_checkbox")
+        self.hboxlayout65.addWidget(self.rosetta_checkbox)
 
-        self.povdir_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.povdir_choose_btn.setEnabled(False)
-        self.povdir_choose_btn.setAutoDefault(False)
-        self.povdir_choose_btn.setObjectName("povdir_choose_btn")
-        self.gridlayout34.addWidget(self.povdir_choose_btn,4,2,1,1)
+        self.rosetta_label = QtGui.QLabel(self.file_locations_grp)
+        self.rosetta_label.setObjectName("rosetta_label")
+        self.hboxlayout65.addWidget(self.rosetta_label)
+        self.gridlayout33.addLayout(self.hboxlayout65,8,0,1,1)
 
-        self.megapov_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.megapov_choose_btn.setEnabled(False)
-        self.megapov_choose_btn.setAutoDefault(False)
-        self.megapov_choose_btn.setObjectName("megapov_choose_btn")
-        self.gridlayout34.addWidget(self.megapov_choose_btn,3,2,1,1)
+        self.rosetta_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.rosetta_path_lineedit.setEnabled(False)
+        self.rosetta_path_lineedit.setObjectName("rosetta_path_lineedit")
+        self.gridlayout33.addWidget(self.rosetta_path_lineedit,8,1,1,1)
 
-        self.gamess_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.gamess_choose_btn.setEnabled(False)
-        self.gamess_choose_btn.setAutoDefault(False)
-        self.gamess_choose_btn.setObjectName("gamess_choose_btn")
-        self.gridlayout34.addWidget(self.gamess_choose_btn,5,2,1,1)
+        self.rosetta_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.rosetta_choose_btn.setObjectName("rosetta_choose_btn")
+        self.gridlayout33.addWidget(self.rosetta_choose_btn,8,2,1,1)
 
-        self.nanohive_choose_btn = QtGui.QPushButton(self.file_locations_grp)
-        self.nanohive_choose_btn.setEnabled(False)
-        self.nanohive_choose_btn.setAutoDefault(False)
-        self.nanohive_choose_btn.setObjectName("nanohive_choose_btn")
-        self.gridlayout34.addWidget(self.nanohive_choose_btn,1,2,1,1)
-        self.gridlayout33.addWidget(self.file_locations_grp,0,0,1,1)
+        self.hboxlayout66 = QtGui.QHBoxLayout()
+        self.hboxlayout66.setSpacing(0)
+        self.hboxlayout66.setMargin(0)
+        self.hboxlayout66.setObjectName("hboxlayout66")
+
+        self.rosetta_db_checkbox = QtGui.QCheckBox(self.file_locations_grp)
+        self.rosetta_db_checkbox.setObjectName("rosetta_db_checkbox")
+        self.hboxlayout66.addWidget(self.rosetta_db_checkbox)
+
+        self.rosetta_db_label = QtGui.QLabel(self.file_locations_grp)
+        self.rosetta_db_label.setObjectName("rosetta_db_label")
+        self.hboxlayout66.addWidget(self.rosetta_db_label)
+        self.gridlayout33.addLayout(self.hboxlayout66,9,0,1,1)
+
+        self.rosetta_db_path_lineedit = QtGui.QLineEdit(self.file_locations_grp)
+        self.rosetta_db_path_lineedit.setEnabled(False)
+        self.rosetta_db_path_lineedit.setObjectName("rosetta_db_path_lineedit")
+        self.gridlayout33.addWidget(self.rosetta_db_path_lineedit,9,1,1,1)
+
+        self.rosetta_db_choose_btn = QtGui.QToolButton(self.file_locations_grp)
+        self.rosetta_db_choose_btn.setObjectName("rosetta_db_choose_btn")
+        self.gridlayout33.addWidget(self.rosetta_db_choose_btn,9,2,1,1)
+        self.vboxlayout38.addWidget(self.file_locations_grp)
+
+        spacerItem59 = QtGui.QSpacerItem(384,71,QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Expanding)
+        self.vboxlayout38.addItem(spacerItem59)
         self.prefsStackedWidget.addWidget(self.Plugins)
 
         self.Undo = QtGui.QWidget()
         self.Undo.setObjectName("Undo")
 
-        self.gridlayout35 = QtGui.QGridLayout(self.Undo)
-        self.gridlayout35.setMargin(9)
-        self.gridlayout35.setSpacing(6)
-        self.gridlayout35.setObjectName("gridlayout35")
+        self.gridlayout34 = QtGui.QGridLayout(self.Undo)
+        self.gridlayout34.setMargin(9)
+        self.gridlayout34.setSpacing(6)
+        self.gridlayout34.setObjectName("gridlayout34")
 
         spacerItem60 = QtGui.QSpacerItem(40,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.gridlayout35.addItem(spacerItem60,0,1,1,1)
-
-        self.vboxlayout38 = QtGui.QVBoxLayout()
-        self.vboxlayout38.setSpacing(4)
-        self.vboxlayout38.setMargin(0)
-        self.vboxlayout38.setObjectName("vboxlayout38")
+        self.gridlayout34.addItem(spacerItem60,0,1,1,1)
 
         self.vboxlayout39 = QtGui.QVBoxLayout()
-        self.vboxlayout39.setSpacing(2)
+        self.vboxlayout39.setSpacing(4)
         self.vboxlayout39.setMargin(0)
         self.vboxlayout39.setObjectName("vboxlayout39")
 
+        self.vboxlayout40 = QtGui.QVBoxLayout()
+        self.vboxlayout40.setSpacing(2)
+        self.vboxlayout40.setMargin(0)
+        self.vboxlayout40.setObjectName("vboxlayout40")
+
         self.undo_restore_view_checkbox = QtGui.QCheckBox(self.Undo)
         self.undo_restore_view_checkbox.setObjectName("undo_restore_view_checkbox")
-        self.vboxlayout39.addWidget(self.undo_restore_view_checkbox)
+        self.vboxlayout40.addWidget(self.undo_restore_view_checkbox)
 
         self.undo_automatic_checkpoints_checkbox = QtGui.QCheckBox(self.Undo)
         self.undo_automatic_checkpoints_checkbox.setObjectName("undo_automatic_checkpoints_checkbox")
-        self.vboxlayout39.addWidget(self.undo_automatic_checkpoints_checkbox)
+        self.vboxlayout40.addWidget(self.undo_automatic_checkpoints_checkbox)
 
-        self.hboxlayout65 = QtGui.QHBoxLayout()
-        self.hboxlayout65.setSpacing(6)
-        self.hboxlayout65.setMargin(0)
-        self.hboxlayout65.setObjectName("hboxlayout65")
+        self.hboxlayout67 = QtGui.QHBoxLayout()
+        self.hboxlayout67.setSpacing(6)
+        self.hboxlayout67.setMargin(0)
+        self.hboxlayout67.setObjectName("hboxlayout67")
 
         self.undo_stack_memory_limit_label = QtGui.QLabel(self.Undo)
         self.undo_stack_memory_limit_label.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.undo_stack_memory_limit_label.setObjectName("undo_stack_memory_limit_label")
-        self.hboxlayout65.addWidget(self.undo_stack_memory_limit_label)
+        self.hboxlayout67.addWidget(self.undo_stack_memory_limit_label)
 
         self.undo_stack_memory_limit_spinbox = QtGui.QSpinBox(self.Undo)
         self.undo_stack_memory_limit_spinbox.setMaximum(99999)
         self.undo_stack_memory_limit_spinbox.setObjectName("undo_stack_memory_limit_spinbox")
-        self.hboxlayout65.addWidget(self.undo_stack_memory_limit_spinbox)
-        self.vboxlayout39.addLayout(self.hboxlayout65)
-        self.vboxlayout38.addLayout(self.vboxlayout39)
+        self.hboxlayout67.addWidget(self.undo_stack_memory_limit_spinbox)
+        self.vboxlayout40.addLayout(self.hboxlayout67)
+        self.vboxlayout39.addLayout(self.vboxlayout40)
 
         spacerItem61 = QtGui.QSpacerItem(20,40,QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Expanding)
-        self.vboxlayout38.addItem(spacerItem61)
-        self.gridlayout35.addLayout(self.vboxlayout38,0,0,1,1)
+        self.vboxlayout39.addItem(spacerItem61)
+        self.gridlayout34.addLayout(self.vboxlayout39,0,0,1,1)
         self.prefsStackedWidget.addWidget(self.Undo)
 
         self.Window = QtGui.QWidget()
         self.Window.setObjectName("Window")
 
-        self.gridlayout36 = QtGui.QGridLayout(self.Window)
-        self.gridlayout36.setMargin(9)
-        self.gridlayout36.setSpacing(6)
-        self.gridlayout36.setObjectName("gridlayout36")
+        self.gridlayout35 = QtGui.QGridLayout(self.Window)
+        self.gridlayout35.setMargin(9)
+        self.gridlayout35.setSpacing(6)
+        self.gridlayout35.setObjectName("gridlayout35")
 
-        self.hboxlayout66 = QtGui.QHBoxLayout()
-        self.hboxlayout66.setSpacing(4)
-        self.hboxlayout66.setMargin(0)
-        self.hboxlayout66.setObjectName("hboxlayout66")
+        self.hboxlayout68 = QtGui.QHBoxLayout()
+        self.hboxlayout68.setSpacing(4)
+        self.hboxlayout68.setMargin(0)
+        self.hboxlayout68.setObjectName("hboxlayout68")
 
         self.groupBox10 = QtGui.QGroupBox(self.Window)
         self.groupBox10.setObjectName("groupBox10")
 
-        self.gridlayout37 = QtGui.QGridLayout(self.groupBox10)
-        self.gridlayout37.setMargin(4)
-        self.gridlayout37.setSpacing(4)
-        self.gridlayout37.setObjectName("gridlayout37")
+        self.gridlayout36 = QtGui.QGridLayout(self.groupBox10)
+        self.gridlayout36.setMargin(4)
+        self.gridlayout36.setSpacing(4)
+        self.gridlayout36.setObjectName("gridlayout36")
 
         self.remember_win_pos_and_size_checkbox = QtGui.QCheckBox(self.groupBox10)
         self.remember_win_pos_and_size_checkbox.setObjectName("remember_win_pos_and_size_checkbox")
-        self.gridlayout37.addWidget(self.remember_win_pos_and_size_checkbox,1,0,1,3)
+        self.gridlayout36.addWidget(self.remember_win_pos_and_size_checkbox,1,0,1,3)
 
-        self.vboxlayout40 = QtGui.QVBoxLayout()
-        self.vboxlayout40.setSpacing(6)
-        self.vboxlayout40.setMargin(0)
-        self.vboxlayout40.setObjectName("vboxlayout40")
+        self.vboxlayout41 = QtGui.QVBoxLayout()
+        self.vboxlayout41.setSpacing(6)
+        self.vboxlayout41.setMargin(0)
+        self.vboxlayout41.setObjectName("vboxlayout41")
 
         self.save_current_btn = QtGui.QPushButton(self.groupBox10)
         self.save_current_btn.setAutoDefault(False)
         self.save_current_btn.setObjectName("save_current_btn")
-        self.vboxlayout40.addWidget(self.save_current_btn)
+        self.vboxlayout41.addWidget(self.save_current_btn)
 
         self.restore_saved_size_btn = QtGui.QPushButton(self.groupBox10)
         self.restore_saved_size_btn.setAutoDefault(False)
         self.restore_saved_size_btn.setObjectName("restore_saved_size_btn")
-        self.vboxlayout40.addWidget(self.restore_saved_size_btn)
-        self.gridlayout37.addLayout(self.vboxlayout40,0,2,1,1)
+        self.vboxlayout41.addWidget(self.restore_saved_size_btn)
+        self.gridlayout36.addLayout(self.vboxlayout41,0,2,1,1)
 
-        self.vboxlayout41 = QtGui.QVBoxLayout()
-        self.vboxlayout41.setSpacing(6)
-        self.vboxlayout41.setMargin(0)
-        self.vboxlayout41.setObjectName("vboxlayout41")
+        self.vboxlayout42 = QtGui.QVBoxLayout()
+        self.vboxlayout42.setSpacing(6)
+        self.vboxlayout42.setMargin(0)
+        self.vboxlayout42.setObjectName("vboxlayout42")
 
         self.textLabel1_2 = QtGui.QLabel(self.groupBox10)
         self.textLabel1_2.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.textLabel1_2.setObjectName("textLabel1_2")
-        self.vboxlayout41.addWidget(self.textLabel1_2)
+        self.vboxlayout42.addWidget(self.textLabel1_2)
 
         self.textLabel1_2_2 = QtGui.QLabel(self.groupBox10)
         self.textLabel1_2_2.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.textLabel1_2_2.setObjectName("textLabel1_2_2")
-        self.vboxlayout41.addWidget(self.textLabel1_2_2)
-        self.gridlayout37.addLayout(self.vboxlayout41,0,0,1,1)
+        self.vboxlayout42.addWidget(self.textLabel1_2_2)
+        self.gridlayout36.addLayout(self.vboxlayout42,0,0,1,1)
 
-        self.gridlayout38 = QtGui.QGridLayout()
-        self.gridlayout38.setMargin(0)
-        self.gridlayout38.setSpacing(6)
-        self.gridlayout38.setObjectName("gridlayout38")
+        self.gridlayout37 = QtGui.QGridLayout()
+        self.gridlayout37.setMargin(0)
+        self.gridlayout37.setSpacing(6)
+        self.gridlayout37.setObjectName("gridlayout37")
 
         self.current_width_spinbox = QtGui.QSpinBox(self.groupBox10)
         self.current_width_spinbox.setMinimum(640)
         self.current_width_spinbox.setMaximum(2048)
         self.current_width_spinbox.setProperty("value",QtCore.QVariant(640))
         self.current_width_spinbox.setObjectName("current_width_spinbox")
-        self.gridlayout38.addWidget(self.current_width_spinbox,0,0,1,1)
+        self.gridlayout37.addWidget(self.current_width_spinbox,0,0,1,1)
 
         self.saved_height_lineedit = QtGui.QLineEdit(self.groupBox10)
         self.saved_height_lineedit.setReadOnly(True)
         self.saved_height_lineedit.setObjectName("saved_height_lineedit")
-        self.gridlayout38.addWidget(self.saved_height_lineedit,1,2,1,1)
+        self.gridlayout37.addWidget(self.saved_height_lineedit,1,2,1,1)
 
         self.current_height_spinbox = QtGui.QSpinBox(self.groupBox10)
         self.current_height_spinbox.setMinimum(480)
         self.current_height_spinbox.setMaximum(2000)
         self.current_height_spinbox.setProperty("value",QtCore.QVariant(480))
         self.current_height_spinbox.setObjectName("current_height_spinbox")
-        self.gridlayout38.addWidget(self.current_height_spinbox,0,2,1,1)
+        self.gridlayout37.addWidget(self.current_height_spinbox,0,2,1,1)
 
         self.saved_width_lineedit = QtGui.QLineEdit(self.groupBox10)
         self.saved_width_lineedit.setReadOnly(True)
         self.saved_width_lineedit.setObjectName("saved_width_lineedit")
-        self.gridlayout38.addWidget(self.saved_width_lineedit,1,0,1,1)
+        self.gridlayout37.addWidget(self.saved_width_lineedit,1,0,1,1)
 
         self.textLabel1_2_2_2 = QtGui.QLabel(self.groupBox10)
         self.textLabel1_2_2_2.setAlignment(QtCore.Qt.AlignCenter)
         self.textLabel1_2_2_2.setObjectName("textLabel1_2_2_2")
-        self.gridlayout38.addWidget(self.textLabel1_2_2_2,0,1,1,1)
+        self.gridlayout37.addWidget(self.textLabel1_2_2_2,0,1,1,1)
 
         self.textLabel1_2_2_2_2 = QtGui.QLabel(self.groupBox10)
         self.textLabel1_2_2_2_2.setAlignment(QtCore.Qt.AlignCenter)
         self.textLabel1_2_2_2_2.setObjectName("textLabel1_2_2_2_2")
-        self.gridlayout38.addWidget(self.textLabel1_2_2_2_2,1,1,1,1)
-        self.gridlayout37.addLayout(self.gridlayout38,0,1,1,1)
-        self.hboxlayout66.addWidget(self.groupBox10)
+        self.gridlayout37.addWidget(self.textLabel1_2_2_2_2,1,1,1,1)
+        self.gridlayout36.addLayout(self.gridlayout37,0,1,1,1)
+        self.hboxlayout68.addWidget(self.groupBox10)
 
         spacerItem62 = QtGui.QSpacerItem(70,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.hboxlayout66.addItem(spacerItem62)
-        self.gridlayout36.addLayout(self.hboxlayout66,0,0,1,1)
+        self.hboxlayout68.addItem(spacerItem62)
+        self.gridlayout35.addLayout(self.hboxlayout68,0,0,1,1)
 
-        self.hboxlayout67 = QtGui.QHBoxLayout()
-        self.hboxlayout67.setSpacing(4)
-        self.hboxlayout67.setMargin(0)
-        self.hboxlayout67.setObjectName("hboxlayout67")
+        self.hboxlayout69 = QtGui.QHBoxLayout()
+        self.hboxlayout69.setSpacing(4)
+        self.hboxlayout69.setMargin(0)
+        self.hboxlayout69.setObjectName("hboxlayout69")
 
         self.groupBox3 = QtGui.QGroupBox(self.Window)
         self.groupBox3.setObjectName("groupBox3")
 
-        self.gridlayout39 = QtGui.QGridLayout(self.groupBox3)
-        self.gridlayout39.setMargin(4)
-        self.gridlayout39.setSpacing(4)
-        self.gridlayout39.setObjectName("gridlayout39")
+        self.gridlayout38 = QtGui.QGridLayout(self.groupBox3)
+        self.gridlayout38.setMargin(4)
+        self.gridlayout38.setSpacing(4)
+        self.gridlayout38.setObjectName("gridlayout38")
 
         self.caption_fullpath_checkbox = QtGui.QCheckBox(self.groupBox3)
         self.caption_fullpath_checkbox.setObjectName("caption_fullpath_checkbox")
-        self.gridlayout39.addWidget(self.caption_fullpath_checkbox,4,0,1,1)
+        self.gridlayout38.addWidget(self.caption_fullpath_checkbox,4,0,1,1)
 
         self.caption_suffix_linedit = QtGui.QLineEdit(self.groupBox3)
         self.caption_suffix_linedit.setMinimumSize(QtCore.QSize(0,0))
         self.caption_suffix_linedit.setMaximumSize(QtCore.QSize(32767,32767))
         self.caption_suffix_linedit.setObjectName("caption_suffix_linedit")
-        self.gridlayout39.addWidget(self.caption_suffix_linedit,3,0,1,1)
+        self.gridlayout38.addWidget(self.caption_suffix_linedit,3,0,1,1)
 
         self.textLabel2_2 = QtGui.QLabel(self.groupBox3)
         self.textLabel2_2.setObjectName("textLabel2_2")
-        self.gridlayout39.addWidget(self.textLabel2_2,2,0,1,1)
+        self.gridlayout38.addWidget(self.textLabel2_2,2,0,1,1)
 
         self.caption_prefix_linedit = QtGui.QLineEdit(self.groupBox3)
         self.caption_prefix_linedit.setMinimumSize(QtCore.QSize(0,0))
         self.caption_prefix_linedit.setMaximumSize(QtCore.QSize(32767,32767))
         self.caption_prefix_linedit.setObjectName("caption_prefix_linedit")
-        self.gridlayout39.addWidget(self.caption_prefix_linedit,1,0,1,1)
+        self.gridlayout38.addWidget(self.caption_prefix_linedit,1,0,1,1)
 
         self.textLabel2 = QtGui.QLabel(self.groupBox3)
         self.textLabel2.setObjectName("textLabel2")
-        self.gridlayout39.addWidget(self.textLabel2,0,0,1,1)
-        self.hboxlayout67.addWidget(self.groupBox3)
+        self.gridlayout38.addWidget(self.textLabel2,0,0,1,1)
+        self.hboxlayout69.addWidget(self.groupBox3)
 
         spacerItem63 = QtGui.QSpacerItem(40,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.hboxlayout67.addItem(spacerItem63)
-        self.gridlayout36.addLayout(self.hboxlayout67,1,0,1,1)
+        self.hboxlayout69.addItem(spacerItem63)
+        self.gridlayout35.addLayout(self.hboxlayout69,1,0,1,1)
 
         spacerItem64 = QtGui.QSpacerItem(20,40,QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Expanding)
-        self.gridlayout36.addItem(spacerItem64,3,0,1,1)
+        self.gridlayout35.addItem(spacerItem64,3,0,1,1)
 
-        self.hboxlayout68 = QtGui.QHBoxLayout()
-        self.hboxlayout68.setSpacing(4)
-        self.hboxlayout68.setMargin(0)
-        self.hboxlayout68.setObjectName("hboxlayout68")
+        self.hboxlayout70 = QtGui.QHBoxLayout()
+        self.hboxlayout70.setSpacing(4)
+        self.hboxlayout70.setMargin(0)
+        self.hboxlayout70.setObjectName("hboxlayout70")
 
         self.selectedFontGroupBox = QtGui.QGroupBox(self.Window)
         self.selectedFontGroupBox.setCheckable(True)
         self.selectedFontGroupBox.setChecked(False)
         self.selectedFontGroupBox.setObjectName("selectedFontGroupBox")
 
-        self.gridlayout40 = QtGui.QGridLayout(self.selectedFontGroupBox)
-        self.gridlayout40.setMargin(4)
-        self.gridlayout40.setSpacing(4)
-        self.gridlayout40.setObjectName("gridlayout40")
+        self.gridlayout39 = QtGui.QGridLayout(self.selectedFontGroupBox)
+        self.gridlayout39.setMargin(4)
+        self.gridlayout39.setSpacing(4)
+        self.gridlayout39.setObjectName("gridlayout39")
 
         self.makeDefaultFontPushButton = QtGui.QPushButton(self.selectedFontGroupBox)
         self.makeDefaultFontPushButton.setAutoDefault(False)
         self.makeDefaultFontPushButton.setObjectName("makeDefaultFontPushButton")
-        self.gridlayout40.addWidget(self.makeDefaultFontPushButton,1,0,1,2)
+        self.gridlayout39.addWidget(self.makeDefaultFontPushButton,1,0,1,2)
 
-        self.vboxlayout42 = QtGui.QVBoxLayout()
-        self.vboxlayout42.setSpacing(6)
-        self.vboxlayout42.setMargin(0)
-        self.vboxlayout42.setObjectName("vboxlayout42")
+        self.vboxlayout43 = QtGui.QVBoxLayout()
+        self.vboxlayout43.setSpacing(6)
+        self.vboxlayout43.setMargin(0)
+        self.vboxlayout43.setObjectName("vboxlayout43")
 
         self.fontComboBox = QtGui.QFontComboBox(self.selectedFontGroupBox)
         self.fontComboBox.setFontFilters(QtGui.QFontComboBox.AllFonts|QtGui.QFontComboBox.ProportionalFonts|QtGui.QFontComboBox.ScalableFonts)
@@ -2893,191 +2922,191 @@ class Ui_PreferencesDialog(object):
         font.setFamily("Arial")
         self.fontComboBox.setCurrentFont(font)
         self.fontComboBox.setObjectName("fontComboBox")
-        self.vboxlayout42.addWidget(self.fontComboBox)
+        self.vboxlayout43.addWidget(self.fontComboBox)
 
-        self.hboxlayout69 = QtGui.QHBoxLayout()
-        self.hboxlayout69.setSpacing(6)
-        self.hboxlayout69.setMargin(0)
-        self.hboxlayout69.setObjectName("hboxlayout69")
+        self.hboxlayout71 = QtGui.QHBoxLayout()
+        self.hboxlayout71.setSpacing(6)
+        self.hboxlayout71.setMargin(0)
+        self.hboxlayout71.setObjectName("hboxlayout71")
 
         self.fontSizeSpinBox = QtGui.QSpinBox(self.selectedFontGroupBox)
         self.fontSizeSpinBox.setMinimum(6)
         self.fontSizeSpinBox.setMaximum(24)
         self.fontSizeSpinBox.setProperty("value",QtCore.QVariant(9))
         self.fontSizeSpinBox.setObjectName("fontSizeSpinBox")
-        self.hboxlayout69.addWidget(self.fontSizeSpinBox)
+        self.hboxlayout71.addWidget(self.fontSizeSpinBox)
 
         spacerItem65 = QtGui.QSpacerItem(40,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.hboxlayout69.addItem(spacerItem65)
-        self.vboxlayout42.addLayout(self.hboxlayout69)
-        self.gridlayout40.addLayout(self.vboxlayout42,0,1,1,1)
+        self.hboxlayout71.addItem(spacerItem65)
+        self.vboxlayout43.addLayout(self.hboxlayout71)
+        self.gridlayout39.addLayout(self.vboxlayout43,0,1,1,1)
 
-        self.vboxlayout43 = QtGui.QVBoxLayout()
-        self.vboxlayout43.setSpacing(6)
-        self.vboxlayout43.setMargin(0)
-        self.vboxlayout43.setObjectName("vboxlayout43")
+        self.vboxlayout44 = QtGui.QVBoxLayout()
+        self.vboxlayout44.setSpacing(6)
+        self.vboxlayout44.setMargin(0)
+        self.vboxlayout44.setObjectName("vboxlayout44")
 
         self.label = QtGui.QLabel(self.selectedFontGroupBox)
         self.label.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.label.setObjectName("label")
-        self.vboxlayout43.addWidget(self.label)
+        self.vboxlayout44.addWidget(self.label)
 
         self.label_3 = QtGui.QLabel(self.selectedFontGroupBox)
         self.label_3.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.label_3.setObjectName("label_3")
-        self.vboxlayout43.addWidget(self.label_3)
-        self.gridlayout40.addLayout(self.vboxlayout43,0,0,1,1)
-        self.hboxlayout68.addWidget(self.selectedFontGroupBox)
+        self.vboxlayout44.addWidget(self.label_3)
+        self.gridlayout39.addLayout(self.vboxlayout44,0,0,1,1)
+        self.hboxlayout70.addWidget(self.selectedFontGroupBox)
 
         spacerItem66 = QtGui.QSpacerItem(280,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.hboxlayout68.addItem(spacerItem66)
-        self.gridlayout36.addLayout(self.hboxlayout68,2,0,1,1)
+        self.hboxlayout70.addItem(spacerItem66)
+        self.gridlayout35.addLayout(self.hboxlayout70,2,0,1,1)
         self.prefsStackedWidget.addWidget(self.Window)
 
         self.Reports = QtGui.QWidget()
         self.Reports.setObjectName("Reports")
 
-        self.gridlayout41 = QtGui.QGridLayout(self.Reports)
-        self.gridlayout41.setMargin(9)
-        self.gridlayout41.setSpacing(6)
-        self.gridlayout41.setObjectName("gridlayout41")
+        self.gridlayout40 = QtGui.QGridLayout(self.Reports)
+        self.gridlayout40.setMargin(9)
+        self.gridlayout40.setSpacing(6)
+        self.gridlayout40.setObjectName("gridlayout40")
 
-        self.vboxlayout44 = QtGui.QVBoxLayout()
-        self.vboxlayout44.setSpacing(4)
-        self.vboxlayout44.setMargin(0)
-        self.vboxlayout44.setObjectName("vboxlayout44")
+        self.vboxlayout45 = QtGui.QVBoxLayout()
+        self.vboxlayout45.setSpacing(4)
+        self.vboxlayout45.setMargin(0)
+        self.vboxlayout45.setObjectName("vboxlayout45")
 
         self.groupBox17 = QtGui.QGroupBox(self.Reports)
         self.groupBox17.setObjectName("groupBox17")
 
-        self.gridlayout42 = QtGui.QGridLayout(self.groupBox17)
-        self.gridlayout42.setMargin(4)
-        self.gridlayout42.setSpacing(2)
-        self.gridlayout42.setObjectName("gridlayout42")
+        self.gridlayout41 = QtGui.QGridLayout(self.groupBox17)
+        self.gridlayout41.setMargin(4)
+        self.gridlayout41.setSpacing(2)
+        self.gridlayout41.setObjectName("gridlayout41")
 
         self.msg_serial_number_checkbox = QtGui.QCheckBox(self.groupBox17)
         self.msg_serial_number_checkbox.setObjectName("msg_serial_number_checkbox")
-        self.gridlayout42.addWidget(self.msg_serial_number_checkbox,0,0,1,2)
+        self.gridlayout41.addWidget(self.msg_serial_number_checkbox,0,0,1,2)
 
         self.msg_timestamp_checkbox = QtGui.QCheckBox(self.groupBox17)
         self.msg_timestamp_checkbox.setObjectName("msg_timestamp_checkbox")
-        self.gridlayout42.addWidget(self.msg_timestamp_checkbox,1,0,1,2)
-        self.vboxlayout44.addWidget(self.groupBox17)
+        self.gridlayout41.addWidget(self.msg_timestamp_checkbox,1,0,1,2)
+        self.vboxlayout45.addWidget(self.groupBox17)
 
         spacerItem67 = QtGui.QSpacerItem(20,40,QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Expanding)
-        self.vboxlayout44.addItem(spacerItem67)
-        self.gridlayout41.addLayout(self.vboxlayout44,0,0,1,1)
+        self.vboxlayout45.addItem(spacerItem67)
+        self.gridlayout40.addLayout(self.vboxlayout45,0,0,1,1)
 
         spacerItem68 = QtGui.QSpacerItem(40,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.gridlayout41.addItem(spacerItem68,0,1,1,1)
+        self.gridlayout40.addItem(spacerItem68,0,1,1,1)
         self.prefsStackedWidget.addWidget(self.Reports)
 
         self.Tooltips = QtGui.QWidget()
         self.Tooltips.setObjectName("Tooltips")
 
-        self.gridlayout43 = QtGui.QGridLayout(self.Tooltips)
-        self.gridlayout43.setMargin(9)
-        self.gridlayout43.setSpacing(6)
-        self.gridlayout43.setObjectName("gridlayout43")
+        self.gridlayout42 = QtGui.QGridLayout(self.Tooltips)
+        self.gridlayout42.setMargin(9)
+        self.gridlayout42.setSpacing(6)
+        self.gridlayout42.setObjectName("gridlayout42")
 
         spacerItem69 = QtGui.QSpacerItem(90,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.gridlayout43.addItem(spacerItem69,0,1,1,1)
+        self.gridlayout42.addItem(spacerItem69,0,1,1,1)
 
-        self.vboxlayout45 = QtGui.QVBoxLayout()
-        self.vboxlayout45.setSpacing(4)
-        self.vboxlayout45.setMargin(0)
-        self.vboxlayout45.setObjectName("vboxlayout45")
+        self.vboxlayout46 = QtGui.QVBoxLayout()
+        self.vboxlayout46.setSpacing(4)
+        self.vboxlayout46.setMargin(0)
+        self.vboxlayout46.setObjectName("vboxlayout46")
 
         self.atom_dynamic_tooltips_grpbox = QtGui.QGroupBox(self.Tooltips)
         self.atom_dynamic_tooltips_grpbox.setObjectName("atom_dynamic_tooltips_grpbox")
 
-        self.vboxlayout46 = QtGui.QVBoxLayout(self.atom_dynamic_tooltips_grpbox)
-        self.vboxlayout46.setSpacing(0)
-        self.vboxlayout46.setMargin(4)
-        self.vboxlayout46.setObjectName("vboxlayout46")
+        self.vboxlayout47 = QtGui.QVBoxLayout(self.atom_dynamic_tooltips_grpbox)
+        self.vboxlayout47.setSpacing(0)
+        self.vboxlayout47.setMargin(4)
+        self.vboxlayout47.setObjectName("vboxlayout47")
 
         self.dynamicToolTipAtomChunkInfo_checkbox = QtGui.QCheckBox(self.atom_dynamic_tooltips_grpbox)
         self.dynamicToolTipAtomChunkInfo_checkbox.setChecked(False)
         self.dynamicToolTipAtomChunkInfo_checkbox.setObjectName("dynamicToolTipAtomChunkInfo_checkbox")
-        self.vboxlayout46.addWidget(self.dynamicToolTipAtomChunkInfo_checkbox)
+        self.vboxlayout47.addWidget(self.dynamicToolTipAtomChunkInfo_checkbox)
 
         self.dynamicToolTipAtomMass_checkbox = QtGui.QCheckBox(self.atom_dynamic_tooltips_grpbox)
         self.dynamicToolTipAtomMass_checkbox.setObjectName("dynamicToolTipAtomMass_checkbox")
-        self.vboxlayout46.addWidget(self.dynamicToolTipAtomMass_checkbox)
+        self.vboxlayout47.addWidget(self.dynamicToolTipAtomMass_checkbox)
 
         self.dynamicToolTipAtomPosition_checkbox = QtGui.QCheckBox(self.atom_dynamic_tooltips_grpbox)
         self.dynamicToolTipAtomPosition_checkbox.setChecked(False)
         self.dynamicToolTipAtomPosition_checkbox.setObjectName("dynamicToolTipAtomPosition_checkbox")
-        self.vboxlayout46.addWidget(self.dynamicToolTipAtomPosition_checkbox)
+        self.vboxlayout47.addWidget(self.dynamicToolTipAtomPosition_checkbox)
 
         self.dynamicToolTipAtomDistanceDeltas_checkbox = QtGui.QCheckBox(self.atom_dynamic_tooltips_grpbox)
         self.dynamicToolTipAtomDistanceDeltas_checkbox.setObjectName("dynamicToolTipAtomDistanceDeltas_checkbox")
-        self.vboxlayout46.addWidget(self.dynamicToolTipAtomDistanceDeltas_checkbox)
+        self.vboxlayout47.addWidget(self.dynamicToolTipAtomDistanceDeltas_checkbox)
 
         self.includeVdwRadiiInAtomDistanceInfo = QtGui.QCheckBox(self.atom_dynamic_tooltips_grpbox)
         self.includeVdwRadiiInAtomDistanceInfo.setObjectName("includeVdwRadiiInAtomDistanceInfo")
-        self.vboxlayout46.addWidget(self.includeVdwRadiiInAtomDistanceInfo)
+        self.vboxlayout47.addWidget(self.includeVdwRadiiInAtomDistanceInfo)
 
-        self.hboxlayout70 = QtGui.QHBoxLayout()
-        self.hboxlayout70.setSpacing(4)
-        self.hboxlayout70.setMargin(0)
-        self.hboxlayout70.setObjectName("hboxlayout70")
+        self.hboxlayout72 = QtGui.QHBoxLayout()
+        self.hboxlayout72.setSpacing(4)
+        self.hboxlayout72.setMargin(0)
+        self.hboxlayout72.setObjectName("hboxlayout72")
 
-        self.gridlayout44 = QtGui.QGridLayout()
-        self.gridlayout44.setMargin(0)
-        self.gridlayout44.setSpacing(2)
-        self.gridlayout44.setObjectName("gridlayout44")
+        self.gridlayout43 = QtGui.QGridLayout()
+        self.gridlayout43.setMargin(0)
+        self.gridlayout43.setSpacing(2)
+        self.gridlayout43.setObjectName("gridlayout43")
 
         self.atomDistPrecisionLabel = QtGui.QLabel(self.atom_dynamic_tooltips_grpbox)
         self.atomDistPrecisionLabel.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.atomDistPrecisionLabel.setObjectName("atomDistPrecisionLabel")
-        self.gridlayout44.addWidget(self.atomDistPrecisionLabel,0,0,1,1)
+        self.gridlayout43.addWidget(self.atomDistPrecisionLabel,0,0,1,1)
 
         self.dynamicToolTipAtomDistancePrecision_spinbox = QtGui.QSpinBox(self.atom_dynamic_tooltips_grpbox)
         self.dynamicToolTipAtomDistancePrecision_spinbox.setMinimum(1)
         self.dynamicToolTipAtomDistancePrecision_spinbox.setMaximum(5)
         self.dynamicToolTipAtomDistancePrecision_spinbox.setProperty("value",QtCore.QVariant(3))
         self.dynamicToolTipAtomDistancePrecision_spinbox.setObjectName("dynamicToolTipAtomDistancePrecision_spinbox")
-        self.gridlayout44.addWidget(self.dynamicToolTipAtomDistancePrecision_spinbox,0,1,1,1)
+        self.gridlayout43.addWidget(self.dynamicToolTipAtomDistancePrecision_spinbox,0,1,1,1)
 
         self.dynamicToolTipBendAnglePrecision_spinbox = QtGui.QSpinBox(self.atom_dynamic_tooltips_grpbox)
         self.dynamicToolTipBendAnglePrecision_spinbox.setMinimum(1)
         self.dynamicToolTipBendAnglePrecision_spinbox.setMaximum(5)
         self.dynamicToolTipBendAnglePrecision_spinbox.setProperty("value",QtCore.QVariant(3))
         self.dynamicToolTipBendAnglePrecision_spinbox.setObjectName("dynamicToolTipBendAnglePrecision_spinbox")
-        self.gridlayout44.addWidget(self.dynamicToolTipBendAnglePrecision_spinbox,1,1,1,1)
+        self.gridlayout43.addWidget(self.dynamicToolTipBendAnglePrecision_spinbox,1,1,1,1)
 
         self.textLabel1_8_3 = QtGui.QLabel(self.atom_dynamic_tooltips_grpbox)
         self.textLabel1_8_3.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter)
         self.textLabel1_8_3.setObjectName("textLabel1_8_3")
-        self.gridlayout44.addWidget(self.textLabel1_8_3,1,0,1,1)
-        self.hboxlayout70.addLayout(self.gridlayout44)
+        self.gridlayout43.addWidget(self.textLabel1_8_3,1,0,1,1)
+        self.hboxlayout72.addLayout(self.gridlayout43)
 
         spacerItem70 = QtGui.QSpacerItem(40,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
-        self.hboxlayout70.addItem(spacerItem70)
-        self.vboxlayout46.addLayout(self.hboxlayout70)
-        self.vboxlayout45.addWidget(self.atom_dynamic_tooltips_grpbox)
+        self.hboxlayout72.addItem(spacerItem70)
+        self.vboxlayout47.addLayout(self.hboxlayout72)
+        self.vboxlayout46.addWidget(self.atom_dynamic_tooltips_grpbox)
 
         self.groupBox35 = QtGui.QGroupBox(self.Tooltips)
         self.groupBox35.setObjectName("groupBox35")
 
-        self.gridlayout45 = QtGui.QGridLayout(self.groupBox35)
-        self.gridlayout45.setMargin(4)
-        self.gridlayout45.setSpacing(0)
-        self.gridlayout45.setObjectName("gridlayout45")
+        self.gridlayout44 = QtGui.QGridLayout(self.groupBox35)
+        self.gridlayout44.setMargin(4)
+        self.gridlayout44.setSpacing(0)
+        self.gridlayout44.setObjectName("gridlayout44")
 
         self.dynamicToolTipBondChunkInfo_checkbox = QtGui.QCheckBox(self.groupBox35)
         self.dynamicToolTipBondChunkInfo_checkbox.setObjectName("dynamicToolTipBondChunkInfo_checkbox")
-        self.gridlayout45.addWidget(self.dynamicToolTipBondChunkInfo_checkbox,1,0,1,1)
+        self.gridlayout44.addWidget(self.dynamicToolTipBondChunkInfo_checkbox,1,0,1,1)
 
         self.dynamicToolTipBondLength_checkbox = QtGui.QCheckBox(self.groupBox35)
         self.dynamicToolTipBondLength_checkbox.setObjectName("dynamicToolTipBondLength_checkbox")
-        self.gridlayout45.addWidget(self.dynamicToolTipBondLength_checkbox,0,0,1,1)
-        self.vboxlayout45.addWidget(self.groupBox35)
+        self.gridlayout44.addWidget(self.dynamicToolTipBondLength_checkbox,0,0,1,1)
+        self.vboxlayout46.addWidget(self.groupBox35)
 
         spacerItem71 = QtGui.QSpacerItem(20,161,QtGui.QSizePolicy.Minimum,QtGui.QSizePolicy.Expanding)
-        self.vboxlayout45.addItem(spacerItem71)
-        self.gridlayout43.addLayout(self.vboxlayout45,0,0,1,1)
+        self.vboxlayout46.addItem(spacerItem71)
+        self.gridlayout42.addLayout(self.vboxlayout46,0,0,1,1)
         self.prefsStackedWidget.addWidget(self.Tooltips)
         self.gridlayout1.addWidget(self.prefsStackedWidget,0,1,1,1)
 
@@ -3100,7 +3129,7 @@ class Ui_PreferencesDialog(object):
 
         self.retranslateUi(PreferencesDialog)
         self.prefsTabWidget.setCurrentIndex(0)
-        self.prefsStackedWidget.setCurrentIndex(2)
+        self.prefsStackedWidget.setCurrentIndex(12)
         self.level_of_detail_combox.setCurrentIndex(2)
         QtCore.QMetaObject.connectSlotsByName(PreferencesDialog)
 
@@ -3349,51 +3378,50 @@ class Ui_PreferencesDialog(object):
         self.textLabel2_4_3.setText(QtGui.QApplication.translate("PreferencesDialog", "High", None, QtGui.QApplication.UnicodeUTF8))
         self.lighting_restore_defaults_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Restore Defaults", None, QtGui.QApplication.UnicodeUTF8))
         self.file_locations_grp.setTitle(QtGui.QApplication.translate("PreferencesDialog", "Location of executables", None, QtGui.QApplication.UnicodeUTF8))
+        self.qutemol_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable QuteMolX", None, QtGui.QApplication.UnicodeUTF8))
+        self.qutemol_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "QuteMolX:", None, QtGui.QApplication.UnicodeUTF8))
         self.qutemol_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the QuteMolX executable file.", None, QtGui.QApplication.UnicodeUTF8))
+        self.qutemol_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.nanohive_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable NanoHive-1", None, QtGui.QApplication.UnicodeUTF8))
+        self.nanohive_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "NanoHive-1:", None, QtGui.QApplication.UnicodeUTF8))
         self.nanohive_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the NanoHive-1 executable file.", None, QtGui.QApplication.UnicodeUTF8))
+        self.nanohive_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.povray_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable POV-Ray", None, QtGui.QApplication.UnicodeUTF8))
+        self.povray_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "POV-Ray:", None, QtGui.QApplication.UnicodeUTF8))
         self.povray_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the POV-Ray executable file.", None, QtGui.QApplication.UnicodeUTF8))
+        self.povray_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.megapov_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable MegaPOV", None, QtGui.QApplication.UnicodeUTF8))
+        self.megapov_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "MegaPOV:", None, QtGui.QApplication.UnicodeUTF8))
         self.megapov_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the MegaPOV executable file (megapov.exe).", None, QtGui.QApplication.UnicodeUTF8))
+        self.megapov_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.povdir_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Custom directory for POV libraries", None, QtGui.QApplication.UnicodeUTF8))
+        self.povdir_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "POV include dir:", None, QtGui.QApplication.UnicodeUTF8))
         self.povdir_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Select custom POV include directory", None, QtGui.QApplication.UnicodeUTF8))
+        self.povdir_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.gamess_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable GAMESS", None, QtGui.QApplication.UnicodeUTF8))
+        self.gamess_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "GAMESS:", None, QtGui.QApplication.UnicodeUTF8))
         self.gamess_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The gamess executable file. Usually it\'s called gamess.??.x or ??gamess.exe.", None, QtGui.QApplication.UnicodeUTF8))
-        self.gromacs_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the mdrun executable file for GROMACS.", None, QtGui.QApplication.UnicodeUTF8))
-        self.nv1_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the mdrun executable file for GROMACS.", None, QtGui.QApplication.UnicodeUTF8))
-        self.cpp_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the C-preprocessor (cpp) executable file for GROMACS to use.", None, QtGui.QApplication.UnicodeUTF8))
-        self.nv1_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable GROMACS", None, QtGui.QApplication.UnicodeUTF8))
-        self.nv1_label.setText(QtGui.QApplication.translate("PreferencesDialog", "NanoVision-1:", None, QtGui.QApplication.UnicodeUTF8))
-        self.nv1_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose the mdrun executable file for GROMACS", None, QtGui.QApplication.UnicodeUTF8))
-        self.nv1_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.gromacs_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose the mdrun executable file for GROMACS", None, QtGui.QApplication.UnicodeUTF8))
-        self.gromacs_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
+        self.gamess_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
         self.gromacs_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable GROMACS", None, QtGui.QApplication.UnicodeUTF8))
         self.gromacs_label.setText(QtGui.QApplication.translate("PreferencesDialog", "GROMACS:", None, QtGui.QApplication.UnicodeUTF8))
+        self.gromacs_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the mdrun executable file for GROMACS.", None, QtGui.QApplication.UnicodeUTF8))
+        self.gromacs_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
         self.cpp_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable cpp (needed by GROMACS)", None, QtGui.QApplication.UnicodeUTF8))
         self.cpp_label.setText(QtGui.QApplication.translate("PreferencesDialog", "cpp:", None, QtGui.QApplication.UnicodeUTF8))
-        self.gamess_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable GAMESS", None, QtGui.QApplication.UnicodeUTF8))
-        self.gamess_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "GAMESS:", None, QtGui.QApplication.UnicodeUTF8))
-        self.povdir_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Custom directory for POV libraries", None, QtGui.QApplication.UnicodeUTF8))
-        self.povdir_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "POV include dir:", None, QtGui.QApplication.UnicodeUTF8))
-        self.megapov_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable MegaPOV", None, QtGui.QApplication.UnicodeUTF8))
-        self.megapov_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "MegaPOV:", None, QtGui.QApplication.UnicodeUTF8))
-        self.povray_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable POV-Ray", None, QtGui.QApplication.UnicodeUTF8))
-        self.povray_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "POV-Ray:", None, QtGui.QApplication.UnicodeUTF8))
-        self.nanohive_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable NanoHive-1", None, QtGui.QApplication.UnicodeUTF8))
-        self.nanohive_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "NanoHive-1:", None, QtGui.QApplication.UnicodeUTF8))
-        self.qutemol_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable QuteMolX", None, QtGui.QApplication.UnicodeUTF8))
-        self.qutemol_lbl.setText(QtGui.QApplication.translate("PreferencesDialog", "QuteMolX:", None, QtGui.QApplication.UnicodeUTF8))
-        self.cpp_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose the C-preprocessor (cpp) executable file for GROMACS to use.", None, QtGui.QApplication.UnicodeUTF8))
-        self.cpp_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.qutemol_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose location of QuteMolX executable ", None, QtGui.QApplication.UnicodeUTF8))
-        self.qutemol_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.povray_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose POV-Ray executable", None, QtGui.QApplication.UnicodeUTF8))
-        self.povray_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.povdir_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose the POV include directory", None, QtGui.QApplication.UnicodeUTF8))
-        self.povdir_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.megapov_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose MegaPOV executable (megapov.exe)", None, QtGui.QApplication.UnicodeUTF8))
-        self.megapov_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.gamess_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose GAMESS executable", None, QtGui.QApplication.UnicodeUTF8))
-        self.gamess_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
-        self.nanohive_choose_btn.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Choose location of NanoHive-1 executable ", None, QtGui.QApplication.UnicodeUTF8))
-        self.nanohive_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "Browse...", None, QtGui.QApplication.UnicodeUTF8))
+        self.cpp_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the C-preprocessor (cpp) executable file for GROMACS to use.", None, QtGui.QApplication.UnicodeUTF8))
+        self.cpp_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.nv1_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable NanoVision-1", None, QtGui.QApplication.UnicodeUTF8))
+        self.nv1_label.setText(QtGui.QApplication.translate("PreferencesDialog", "NanoVision-1:", None, QtGui.QApplication.UnicodeUTF8))
+        self.nv1_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to the mdrun executable file for NanoVision-1.", None, QtGui.QApplication.UnicodeUTF8))
+        self.nv1_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable Rosetta", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_label.setText(QtGui.QApplication.translate("PreferencesDialog", "Rosetta:", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The full path to Rosetta executable file.", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_db_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Enable Rosetta Database", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_db_label.setText(QtGui.QApplication.translate("PreferencesDialog", "Rosetta DB:", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_db_path_lineedit.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "The top-level Rosetta database directory.", None, QtGui.QApplication.UnicodeUTF8))
+        self.rosetta_db_choose_btn.setText(QtGui.QApplication.translate("PreferencesDialog", "...", None, QtGui.QApplication.UnicodeUTF8))
         self.undo_restore_view_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Undo will switch to the view saved with each structural change.", None, QtGui.QApplication.UnicodeUTF8))
         self.undo_restore_view_checkbox.setText(QtGui.QApplication.translate("PreferencesDialog", "Restore view when undoing structural changes", None, QtGui.QApplication.UnicodeUTF8))
         self.undo_automatic_checkpoints_checkbox.setToolTip(QtGui.QApplication.translate("PreferencesDialog", "Specify Automatic or Manual Checkpoints at program startup.", None, QtGui.QApplication.UnicodeUTF8))
diff --git a/cad/src/ne1_ui/prefs/PreferencesDialog.ui b/cad/src/ne1_ui/prefs/PreferencesDialog.ui
index d76404059..f7ba54058 100644
--- a/cad/src/ne1_ui/prefs/PreferencesDialog.ui
+++ b/cad/src/ne1_ui/prefs/PreferencesDialog.ui
@@ -114,7 +114,7 @@
        <item row="0" column="1" >
         <widget class="QStackedWidget" name="prefsStackedWidget" >
          <property name="currentIndex" >
-          <number>2</number>
+          <number>12</number>
          </property>
          <widget class="QWidget" name="General" >
           <layout class="QGridLayout" >
@@ -6307,58 +6307,24 @@
           </layout>
          </widget>
          <widget class="QWidget" name="Plugins" >
-          <layout class="QGridLayout" >
-           <property name="leftMargin" >
-            <number>9</number>
-           </property>
-           <property name="topMargin" >
-            <number>9</number>
-           </property>
-           <property name="rightMargin" >
-            <number>9</number>
-           </property>
-           <property name="bottomMargin" >
-            <number>9</number>
-           </property>
-           <property name="horizontalSpacing" >
-            <number>6</number>
-           </property>
-           <property name="verticalSpacing" >
-            <number>6</number>
-           </property>
-           <item row="1" column="0" >
-            <spacer>
-             <property name="orientation" >
-              <enum>Qt::Vertical</enum>
-             </property>
-             <property name="sizeType" >
-              <enum>QSizePolicy::Expanding</enum>
-             </property>
-             <property name="sizeHint" >
-              <size>
-               <width>20</width>
-               <height>218</height>
-              </size>
-             </property>
-            </spacer>
-           </item>
-           <item row="0" column="0" >
+          <layout class="QVBoxLayout" >
+           <item>
             <widget class="QGroupBox" name="file_locations_grp" >
              <property name="title" >
               <string>Location of executables</string>
              </property>
              <layout class="QGridLayout" >
               <property name="leftMargin" >
-               <number>2</number>
+               <number>4</number>
               </property>
               <property name="topMargin" >
-               <number>2</number>
+               <number>4</number>
               </property>
               <property name="rightMargin" >
-               <number>2</number>
+               <number>4</number>
               </property>
               <property name="bottomMargin" >
-               <number>2</number>
+               <number>4</number>
               </property>
               <property name="horizontalSpacing" >
                <number>2</number>
@@ -6366,139 +6332,7 @@
               <property name="verticalSpacing" >
                <number>2</number>
               </property>
-              <item row="0" column="1" >
-               <widget class="QLineEdit" name="qutemol_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the QuteMolX executable file.</string>
-                </property>
-                <property name="text" >
-                 <string/>
-                </property>
-               </widget>
-              </item>
-              <item row="1" column="1" >
-               <widget class="QLineEdit" name="nanohive_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the NanoHive-1 executable file.</string>
-                </property>
-                <property name="text" >
-                 <string/>
-                </property>
-               </widget>
-              </item>
-              <item row="2" column="1" >
-               <widget class="QLineEdit" name="povray_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="maximumSize" >
-                 <size>
-                  <width>32767</width>
-                  <height>32767</height>
-                 </size>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the POV-Ray executable file.</string>
-                </property>
-                <property name="text" >
-                 <string/>
-                </property>
-                <property name="maxLength" >
-                 <number>32767</number>
-                </property>
-               </widget>
-              </item>
-              <item row="3" column="1" >
-               <widget class="QLineEdit" name="megapov_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="maximumSize" >
-                 <size>
-                  <width>32767</width>
-                  <height>32767</height>
-                 </size>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the MegaPOV executable file (megapov.exe).</string>
-                </property>
-                <property name="text" >
-                 <string/>
-                </property>
-                <property name="maxLength" >
-                 <number>32767</number>
-                </property>
-               </widget>
-              </item>
-              <item row="4" column="1" >
-               <widget class="QLineEdit" name="povdir_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>Select custom POV include directory</string>
-                </property>
-               </widget>
-              </item>
-              <item row="5" column="1" >
-               <widget class="QLineEdit" name="gamess_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="maximumSize" >
-                 <size>
-                  <width>32767</width>
-                  <height>32767</height>
-                 </size>
-                </property>
-                <property name="toolTip" >
-                 <string>The gamess executable file. Usually it's called gamess.??.x or ??gamess.exe.</string>
-                </property>
-                <property name="text" >
-                 <string/>
-                </property>
-                <property name="maxLength" >
-                 <number>32767</number>
-                </property>
-               </widget>
-              </item>
-              <item row="6" column="1" >
-               <widget class="QLineEdit" name="gromacs_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the mdrun executable file for GROMACS.</string>
-                </property>
-               </widget>
-              </item>
-              <item row="8" column="1" >
-               <widget class="QLineEdit" name="nv1_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the mdrun executable file for GROMACS.</string>
-                </property>
-               </widget>
-              </item>
-              <item row="7" column="1" >
-               <widget class="QLineEdit" name="cpp_path_lineedit" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>The full path to the C-preprocessor (cpp) executable file for GROMACS to use.</string>
-                </property>
-               </widget>
-              </item>
-              <item row="8" column="0" >
+              <item row="0" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6516,9 +6350,12 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="nv1_checkbox" >
+                 <widget class="QCheckBox" name="qutemol_checkbox" >
+                  <property name="enabled" >
+                   <bool>true</bool>
+                  </property>
                   <property name="toolTip" >
-                   <string>Enable GROMACS</string>
+                   <string>Enable QuteMolX</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6526,41 +6363,56 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="nv1_label" >
+                 <widget class="QLabel" name="qutemol_lbl" >
+                  <property name="enabled" >
+                   <bool>true</bool>
+                  </property>
+                  <property name="sizePolicy" >
+                   <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
+                    <horstretch>0</horstretch>
+                    <verstretch>0</verstretch>
+                   </sizepolicy>
+                  </property>
+                  <property name="minimumSize" >
+                   <size>
+                    <width>60</width>
+                    <height>0</height>
+                   </size>
+                  </property>
+                  <property name="toolTip" >
+                   <string/>
+                  </property>
                   <property name="text" >
-                   <string>NanoVision-1:</string>
+                   <string>QuteMolX:</string>
+                  </property>
+                  <property name="alignment" >
+                   <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
                   </property>
                  </widget>
                 </item>
                </layout>
               </item>
-              <item row="8" column="2" >
-               <widget class="QPushButton" name="nv1_choose_btn" >
+              <item row="0" column="1" >
+               <widget class="QLineEdit" name="qutemol_path_lineedit" >
                 <property name="enabled" >
                  <bool>false</bool>
                 </property>
                 <property name="toolTip" >
-                 <string>Choose the mdrun executable file for GROMACS</string>
+                 <string>The full path to the QuteMolX executable file.</string>
                 </property>
                 <property name="text" >
-                 <string>Browse...</string>
+                 <string/>
                 </property>
                </widget>
               </item>
-              <item row="6" column="2" >
-               <widget class="QPushButton" name="gromacs_choose_btn" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>Choose the mdrun executable file for GROMACS</string>
-                </property>
+              <item row="0" column="2" >
+               <widget class="QToolButton" name="qutemol_choose_btn" >
                 <property name="text" >
-                 <string>Browse...</string>
+                 <string>...</string>
                 </property>
                </widget>
               </item>
-              <item row="6" column="0" >
+              <item row="1" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6578,9 +6430,12 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="gromacs_checkbox" >
+                 <widget class="QCheckBox" name="nanohive_checkbox" >
+                  <property name="enabled" >
+                   <bool>true</bool>
+                  </property>
                   <property name="toolTip" >
-                   <string>Enable GROMACS</string>
+                   <string>Enable NanoHive-1</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6588,15 +6443,56 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="gromacs_label" >
+                 <widget class="QLabel" name="nanohive_lbl" >
+                  <property name="enabled" >
+                   <bool>true</bool>
+                  </property>
+                  <property name="sizePolicy" >
+                   <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
+                    <horstretch>0</horstretch>
+                    <verstretch>0</verstretch>
+                   </sizepolicy>
+                  </property>
+                  <property name="minimumSize" >
+                   <size>
+                    <width>60</width>
+                    <height>0</height>
+                   </size>
+                  </property>
+                  <property name="toolTip" >
+                   <string/>
+                  </property>
                   <property name="text" >
-                   <string>GROMACS:</string>
+                   <string>NanoHive-1:</string>
+                  </property>
+                  <property name="alignment" >
+                   <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
                   </property>
                  </widget>
                 </item>
                </layout>
               </item>
-              <item row="7" column="0" >
+              <item row="1" column="1" >
+               <widget class="QLineEdit" name="nanohive_path_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="toolTip" >
+                 <string>The full path to the NanoHive-1 executable file.</string>
+                </property>
+                <property name="text" >
+                 <string/>
+                </property>
+               </widget>
+              </item>
+              <item row="1" column="2" >
+               <widget class="QToolButton" name="nanohive_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
+              <item row="2" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6614,9 +6510,9 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="cpp_checkbox" >
+                 <widget class="QCheckBox" name="povray_checkbox" >
                   <property name="toolTip" >
-                   <string>Enable cpp (needed by GROMACS)</string>
+                   <string>Enable POV-Ray</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6624,9 +6520,24 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="cpp_label" >
+                 <widget class="QLabel" name="povray_lbl" >
+                  <property name="sizePolicy" >
+                   <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
+                    <horstretch>0</horstretch>
+                    <verstretch>0</verstretch>
+                   </sizepolicy>
+                  </property>
+                  <property name="minimumSize" >
+                   <size>
+                    <width>60</width>
+                    <height>0</height>
+                   </size>
+                  </property>
+                  <property name="toolTip" >
+                   <string/>
+                  </property>
                   <property name="text" >
-                   <string>cpp:</string>
+                   <string>POV-Ray:</string>
                   </property>
                   <property name="alignment" >
                    <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
@@ -6635,7 +6546,36 @@
                 </item>
                </layout>
               </item>
-              <item row="5" column="0" >
+              <item row="2" column="1" >
+               <widget class="QLineEdit" name="povray_path_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="maximumSize" >
+                 <size>
+                  <width>32767</width>
+                  <height>32767</height>
+                 </size>
+                </property>
+                <property name="toolTip" >
+                 <string>The full path to the POV-Ray executable file.</string>
+                </property>
+                <property name="text" >
+                 <string/>
+                </property>
+                <property name="maxLength" >
+                 <number>32767</number>
+                </property>
+               </widget>
+              </item>
+              <item row="2" column="2" >
+               <widget class="QToolButton" name="povray_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
+              <item row="3" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6653,9 +6593,9 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="gamess_checkbox" >
+                 <widget class="QCheckBox" name="megapov_checkbox" >
                   <property name="toolTip" >
-                   <string>Enable GAMESS</string>
+                   <string>Enable MegaPOV</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6663,7 +6603,7 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="gamess_lbl" >
+                 <widget class="QLabel" name="megapov_lbl" >
                   <property name="sizePolicy" >
                    <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
                     <horstretch>0</horstretch>
@@ -6680,7 +6620,7 @@
                    <string/>
                   </property>
                   <property name="text" >
-                   <string>GAMESS:</string>
+                   <string>MegaPOV:</string>
                   </property>
                   <property name="alignment" >
                    <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
@@ -6689,6 +6629,35 @@
                 </item>
                </layout>
               </item>
+              <item row="3" column="1" >
+               <widget class="QLineEdit" name="megapov_path_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="maximumSize" >
+                 <size>
+                  <width>32767</width>
+                  <height>32767</height>
+                 </size>
+                </property>
+                <property name="toolTip" >
+                 <string>The full path to the MegaPOV executable file (megapov.exe).</string>
+                </property>
+                <property name="text" >
+                 <string/>
+                </property>
+                <property name="maxLength" >
+                 <number>32767</number>
+                </property>
+               </widget>
+              </item>
+              <item row="3" column="2" >
+               <widget class="QToolButton" name="megapov_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
               <item row="4" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
@@ -6746,7 +6715,24 @@
                 </item>
                </layout>
               </item>
-              <item row="3" column="0" >
+              <item row="4" column="1" >
+               <widget class="QLineEdit" name="povdir_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="toolTip" >
+                 <string>Select custom POV include directory</string>
+                </property>
+               </widget>
+              </item>
+              <item row="4" column="2" >
+               <widget class="QToolButton" name="povdir_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
+              <item row="5" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6764,9 +6750,9 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="megapov_checkbox" >
+                 <widget class="QCheckBox" name="gamess_checkbox" >
                   <property name="toolTip" >
-                   <string>Enable MegaPOV</string>
+                   <string>Enable GAMESS</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6774,7 +6760,7 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="megapov_lbl" >
+                 <widget class="QLabel" name="gamess_lbl" >
                   <property name="sizePolicy" >
                    <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
                     <horstretch>0</horstretch>
@@ -6791,7 +6777,7 @@
                    <string/>
                   </property>
                   <property name="text" >
-                   <string>MegaPOV:</string>
+                   <string>GAMESS:</string>
                   </property>
                   <property name="alignment" >
                    <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
@@ -6800,7 +6786,36 @@
                 </item>
                </layout>
               </item>
-              <item row="2" column="0" >
+              <item row="5" column="1" >
+               <widget class="QLineEdit" name="gamess_path_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="maximumSize" >
+                 <size>
+                  <width>32767</width>
+                  <height>32767</height>
+                 </size>
+                </property>
+                <property name="toolTip" >
+                 <string>The gamess executable file. Usually it's called gamess.??.x or ??gamess.exe.</string>
+                </property>
+                <property name="text" >
+                 <string/>
+                </property>
+                <property name="maxLength" >
+                 <number>32767</number>
+                </property>
+               </widget>
+              </item>
+              <item row="5" column="2" >
+               <widget class="QToolButton" name="gamess_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
+              <item row="6" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6818,9 +6833,9 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="povray_checkbox" >
+                 <widget class="QCheckBox" name="gromacs_checkbox" >
                   <property name="toolTip" >
-                   <string>Enable POV-Ray</string>
+                   <string>Enable GROMACS</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6828,33 +6843,32 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="povray_lbl" >
-                  <property name="sizePolicy" >
-                   <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
-                    <horstretch>0</horstretch>
-                    <verstretch>0</verstretch>
-                   </sizepolicy>
-                  </property>
-                  <property name="minimumSize" >
-                   <size>
-                    <width>60</width>
-                    <height>0</height>
-                   </size>
-                  </property>
-                  <property name="toolTip" >
-                   <string/>
-                  </property>
+                 <widget class="QLabel" name="gromacs_label" >
                   <property name="text" >
-                   <string>POV-Ray:</string>
-                  </property>
-                  <property name="alignment" >
-                   <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+                   <string>GROMACS:</string>
                   </property>
                  </widget>
                 </item>
                </layout>
               </item>
-              <item row="1" column="0" >
+              <item row="6" column="1" >
+               <widget class="QLineEdit" name="gromacs_path_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="toolTip" >
+                 <string>The full path to the mdrun executable file for GROMACS.</string>
+                </property>
+               </widget>
+              </item>
+              <item row="6" column="2" >
+               <widget class="QToolButton" name="gromacs_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
+              <item row="7" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6872,12 +6886,9 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="nanohive_checkbox" >
-                  <property name="enabled" >
-                   <bool>true</bool>
-                  </property>
+                 <widget class="QCheckBox" name="cpp_checkbox" >
                   <property name="toolTip" >
-                   <string>Enable NanoHive-1</string>
+                   <string>Enable cpp (needed by GROMACS)</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6885,27 +6896,9 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="nanohive_lbl" >
-                  <property name="enabled" >
-                   <bool>true</bool>
-                  </property>
-                  <property name="sizePolicy" >
-                   <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
-                    <horstretch>0</horstretch>
-                    <verstretch>0</verstretch>
-                   </sizepolicy>
-                  </property>
-                  <property name="minimumSize" >
-                   <size>
-                    <width>60</width>
-                    <height>0</height>
-                   </size>
-                  </property>
-                  <property name="toolTip" >
-                   <string/>
-                  </property>
+                 <widget class="QLabel" name="cpp_label" >
                   <property name="text" >
-                   <string>NanoHive-1:</string>
+                   <string>cpp:</string>
                   </property>
                   <property name="alignment" >
                    <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
@@ -6914,7 +6907,24 @@
                 </item>
                </layout>
               </item>
-              <item row="0" column="0" >
+              <item row="7" column="1" >
+               <widget class="QLineEdit" name="cpp_path_lineedit" >
+                <property name="enabled" >
+                 <bool>false</bool>
+                </property>
+                <property name="toolTip" >
+                 <string>The full path to the C-preprocessor (cpp) executable file for GROMACS to use.</string>
+                </property>
+               </widget>
+              </item>
+              <item row="7" column="2" >
+               <widget class="QToolButton" name="cpp_choose_btn" >
+                <property name="text" >
+                 <string>...</string>
+                </property>
+               </widget>
+              </item>
+              <item row="10" column="0" >
                <layout class="QHBoxLayout" >
                 <property name="spacing" >
                  <number>0</number>
@@ -6932,12 +6942,9 @@
                  <number>0</number>
                 </property>
                 <item>
-                 <widget class="QCheckBox" name="qutemol_checkbox" >
-                  <property name="enabled" >
-                   <bool>true</bool>
-                  </property>
+                 <widget class="QCheckBox" name="nv1_checkbox" >
                   <property name="toolTip" >
-                   <string>Enable QuteMolX</string>
+                   <string>Enable NanoVision-1</string>
                   </property>
                   <property name="text" >
                    <string/>
@@ -6945,147 +6952,156 @@
                  </widget>
                 </item>
                 <item>
-                 <widget class="QLabel" name="qutemol_lbl" >
-                  <property name="enabled" >
-                   <bool>true</bool>
-                  </property>
-                  <property name="sizePolicy" >
-                   <sizepolicy vsizetype="Preferred" hsizetype="Minimum" >
-                    <horstretch>0</horstretch>
-                    <verstretch>0</verstretch>
-                   </sizepolicy>
-                  </property>
-                  <property name="minimumSize" >
-                   <size>
-                    <width>60</width>
-                    <height>0</height>
-                   </size>
-                  </property>
-                  <property name="toolTip" >
-                   <string/>
-                  </property>
+                 <widget class="QLabel" name="nv1_label" >
                   <property name="text" >
-                   <string>QuteMolX:</string>
-                  </property>
-                  <property name="alignment" >
-                   <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+                   <string>NanoVision-1:</string>
                   </property>
                  </widget>
                 </item>
                </layout>
               </item>
-              <item row="7" column="2" >
-               <widget class="QPushButton" name="cpp_choose_btn" >
+              <item row="10" column="1" >
+               <widget class="QLineEdit" name="nv1_path_lineedit" >
                 <property name="enabled" >
                  <bool>false</bool>
                 </property>
                 <property name="toolTip" >
-                 <string>Choose the C-preprocessor (cpp) executable file for GROMACS to use.</string>
-                </property>
-                <property name="text" >
-                 <string>Browse...</string>
+                 <string>The full path to the mdrun executable file for NanoVision-1.</string>
                 </property>
                </widget>
               </item>
-              <item row="0" column="2" >
-               <widget class="QPushButton" name="qutemol_choose_btn" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>Choose location of QuteMolX executable </string>
-                </property>
+              <item row="10" column="2" >
+               <widget class="QToolButton" name="nv1_choose_btn" >
                 <property name="text" >
-                 <string>Browse...</string>
-                </property>
-                <property name="autoDefault" >
-                 <bool>false</bool>
+                 <string>...</string>
                 </property>
                </widget>
               </item>
-              <item row="2" column="2" >
-               <widget class="QPushButton" name="povray_choose_btn" >
-                <property name="enabled" >
-                 <bool>false</bool>
+              <item row="8" column="0" >
+               <layout class="QHBoxLayout" >
+                <property name="spacing" >
+                 <number>0</number>
                 </property>
-                <property name="toolTip" >
-                 <string>Choose POV-Ray executable</string>
+                <property name="leftMargin" >
+                 <number>0</number>
                 </property>
-                <property name="text" >
-                 <string>Browse...</string>
+                <property name="topMargin" >
+                 <number>0</number>
                 </property>
-                <property name="autoDefault" >
-                 <bool>false</bool>
+                <property name="rightMargin" >
+                 <number>0</number>
                 </property>
-               </widget>
+                <property name="bottomMargin" >
+                 <number>0</number>
+                </property>
+                <item>
+                 <widget class="QCheckBox" name="rosetta_checkbox" >
+                  <property name="toolTip" >
+                   <string>Enable Rosetta</string>
+                  </property>
+                  <property name="text" >
+                   <string/>
+                  </property>
+                 </widget>
+                </item>
+                <item>
+                 <widget class="QLabel" name="rosetta_label" >
+                  <property name="text" >
+                   <string>Rosetta:</string>
+                  </property>
+                 </widget>
+                </item>
+               </layout>
               </item>
-              <item row="4" column="2" >
-               <widget class="QPushButton" name="povdir_choose_btn" >
+              <item row="8" column="1" >
+               <widget class="QLineEdit" name="rosetta_path_lineedit" >
                 <property name="enabled" >
                  <bool>false</bool>
                 </property>
                 <property name="toolTip" >
-                 <string>Choose the POV include directory</string>
-                </property>
-                <property name="text" >
-                 <string>Browse...</string>
-                </property>
-                <property name="autoDefault" >
-                 <bool>false</bool>
+                 <string>The full path to Rosetta executable file.</string>
                 </property>
                </widget>
               </item>
-              <item row="3" column="2" >
-               <widget class="QPushButton" name="megapov_choose_btn" >
-                <property name="enabled" >
-                 <bool>false</bool>
-                </property>
-                <property name="toolTip" >
-                 <string>Choose MegaPOV executable (megapov.exe)</string>
-                </property>
+              <item row="8" column="2" >
+               <widget class="QToolButton" name="rosetta_choose_btn" >
                 <property name="text" >
-                 <string>Browse...</string>
-                </property>
-                <property name="autoDefault" >
-                 <bool>false</bool>
+                 <string>...</string>
                 </property>
                </widget>
               </item>
-              <item row="5" column="2" >
-               <widget class="QPushButton" name="gamess_choose_btn" >
-                <property name="enabled" >
-                 <bool>false</bool>
+              <item row="9" column="0" >
+               <layout class="QHBoxLayout" >
+                <property name="spacing" >
+                 <number>0</number>
                 </property>
-                <property name="toolTip" >
-                 <string>Choose GAMESS executable</string>
+                <property name="leftMargin" >
+                 <number>0</number>
                 </property>
-                <property name="text" >
-                 <string>Browse...</string>
+                <property name="topMargin" >
+                 <number>0</number>
                 </property>
-                <property name="autoDefault" >
-                 <bool>false</bool>
+                <property name="rightMargin" >
+                 <number>0</number>
                 </property>
-               </widget>
+                <property name="bottomMargin" >
+                 <number>0</number>
+                </property>
+                <item>
+                 <widget class="QCheckBox" name="rosetta_db_checkbox" >
+                  <property name="toolTip" >
+                   <string>Enable Rosetta Database</string>
+                  </property>
+                  <property name="text" >
+                   <string/>
+                  </property>
+                 </widget>
+                </item>
+                <item>
+                 <widget class="QLabel" name="rosetta_db_label" >
+                  <property name="text" >
+                   <string>Rosetta DB:</string>
+                  </property>
+                 </widget>
+                </item>
+               </layout>
               </item>
-              <item row="1" column="2" >
-               <widget class="QPushButton" name="nanohive_choose_btn" >
+              <item row="9" column="1" >
+               <widget class="QLineEdit" name="rosetta_db_path_lineedit" >
                 <property name="enabled" >
                  <bool>false</bool>
                 </property>
                 <property name="toolTip" >
-                 <string>Choose location of NanoHive-1 executable </string>
+                 <string>The top-level Rosetta database directory.</string>
                 </property>
+               </widget>
+              </item>
+              <item row="9" column="2" >
+               <widget class="QToolButton" name="rosetta_db_choose_btn" >
                 <property name="text" >
-                 <string>Browse...</string>
-                </property>
-                <property name="autoDefault" >
-                 <bool>false</bool>
+                 <string>...</string>
                 </property>
                </widget>
               </item>
              </layout>
             </widget>
            </item>
+           <item>
+            <spacer>
+             <property name="orientation" >
+              <enum>Qt::Vertical</enum>
+             </property>
+             <property name="sizeType" >
+              <enum>QSizePolicy::Expanding</enum>
+             </property>
+             <property name="sizeHint" >
+              <size>
+               <width>384</width>
+               <height>71</height>
+              </size>
+             </property>
+            </spacer>
+           </item>
           </layout>
          </widget>
          <widget class="QWidget" name="Undo" >
author	Mark Sims <mark@nanorex.com>	2008-07-16 13:58:30 +0000
committer	Mark Sims <mark@nanorex.com>	2008-07-16 13:58:30 +0000
commit	efed028ad3f77cabae18fd9864912d75cfea175d (patch)
tree	f170ff7d733de0b8f4f97e7d3bd284b2a58e25a1 /cad/src/ne1_ui/prefs
parent	ba5884b372f503bab187a19ccdcea8bb603c4bbd (diff)
download	nanoengineer-theirix-efed028ad3f77cabae18fd9864912d75cfea175d.tar.gz nanoengineer-theirix-efed028ad3f77cabae18fd9864912d75cfea175d.zip