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/*
© Copyright 2008 Randal A. Koene <randalk@netmorph.org>
With design assistance from J. van Pelt & A. van Ooyen, and support
from the Netherlands Organization for Scientific Research (NWO)
Program Computational Life Sciences grant CLS2003 (635.100.005) and
from the EC Marie Curie Research and Training Network (RTN)
NEURoVERS-it 019247.
This file is part of NETMORPH.
NETMORPH is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
NETMORPH is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with NETMORPH. If not, see <http://www.gnu.org/licenses/>.
*/
// Color_Table.cc
// Randal A. Koene, 20050101
#include "Color_Table.hh"
#include "global.hh"
#include "Fig_Object.hh"
Color_Table defaultcolortable;
Color_Table * colortable = &defaultcolortable;
long definedcolors = 32; // the base colors pre-defined in XFig, colors numbered 32 and above are user-defined colors
const char ctname[CT_ARRAY_SIZE][25] = {
"CT_background",
"CT_neuron_untyped",
"CT_neuron_principal",
"CT_neuron_interneuron",
"CT_connection_excitatory",
"CT_connection_inhibitory",
"CT_synapses",
"CT_dendrites",
"CT_axon_excitatory",
"CT_axon_inhibitory",
"CT_partition_border",
"CT_partition_overfull",
"CT_partition_evaluated",
"CT_progress_text",
"CT_AMPAR",
"CT_NMDAR",
"CT_GABAR"
};
// classes
void Color_Table::init() {
for (int i = 0; i<CT_ARRAY_SIZE; i++) { ct[i].colnum = definedcolors; definedcolors++; }
ct[CT_background].coldef = 0xffffff;
ct[CT_neuron_untyped].coldef = 0x000000;
ct[CT_neuron_principal].coldef = 0x0000ae;
ct[CT_neuron_interneuron].coldef = 0xcf0000;
ct[CT_connection_excitatory].coldef = 0x0000ff;
ct[CT_connection_inhibitory].coldef = 0xff0000;
ct[CT_synapses].coldef = 0xff00ff;
ct[CT_dendrites].coldef = 0x0000ff;
ct[CT_axon_excitatory].coldef = 0x009200;
ct[CT_axon_inhibitory].coldef = 0xff0000;
ct[CT_partition_border].coldef = 0x000000;
ct[CT_partition_overfull].coldef = 0xffff00;
ct[CT_partition_evaluated].coldef = 0x00ffff;
ct[CT_progress_text].coldef = 0x000000;
ct[CT_AMPAR].coldef = 0x007F00;
ct[CT_NMDAR].coldef = 0x00007F;
ct[CT_GABAR].coldef = 0x7F0000;
}
void Color_Table::parse_CLP(Command_Line_Parameters & clp) {
int n;
if ((n=clp.Specifies_Parameter("color_table"))>=0) {
if (downcase(clp.ParValue(n))==String("default")) init();
else if (downcase(clp.ParValue(n))==String("culturestain")) set_culture_stain();
else warning("Warning: Ignoring unknown color table specification '"+clp.ParValue(n)+"'.\n");
}
for (int i = 0; i<CT_ARRAY_SIZE; i++)
if ((n=clp.Specifies_Parameter(ctname[i]))>=0) ct[i].coldef = strtoul(clp.ParValue(n),NULL,0);
}
String Color_Table::report_parameters() {
String res("Color table: ");
report(String(ctname[7])+String(ctname[8])+String(ctname[9])+'\n');
for (int i = 0; i<CT_ARRAY_SIZE; i++) {
res += ctname[i];
res += "=0x";
res += RGBstr(ct[i].coldef);
if (i==7) report(res+'\n');
}
return res;
}
void Color_Table::set_culture_stain() {
ct[CT_background].coldef = 0x000000;
ct[CT_neuron_untyped].coldef = 0xffffff;
ct[CT_neuron_principal].coldef = 0x007f00;
ct[CT_neuron_interneuron].coldef = 0x7f0000;
ct[CT_connection_excitatory].coldef = 0xffff00;
ct[CT_connection_inhibitory].coldef = 0xff0000;
ct[CT_synapses].coldef = 0xffffff;
ct[CT_dendrites].coldef = 0x007f00;
ct[CT_axon_excitatory].coldef = 0xffff00;
ct[CT_axon_inhibitory].coldef = 0xff0000;
ct[CT_partition_border].coldef = 0xffffff;
ct[CT_partition_overfull].coldef = 0x00003f;
ct[CT_partition_evaluated].coldef = 0x00005f;
ct[CT_progress_text].coldef = 0xffffff;
ct[CT_AMPAR].coldef = 0x00FF00;
ct[CT_NMDAR].coldef = 0x0000FF;
ct[CT_GABAR].coldef = 0xFF0000;
}
unsigned int Color_Table::get_color(long cn) {
// get a color definition from the additional list, where
// cn is the assigned numerical color ID
if ((cn<(CT_ARRAY_SIZE+32)) || (cn>=definedcolors) || (cn>extracolorsmax)) {
warning("Warning: Requested color outside of 'extra colors' range with color ID number "+String(cn)+", setting to black.\n");
return 0;
}
return extracolor[cn-(CT_ARRAY_SIZE+32)];
}
void Color_Table::set_color(long cn, unsigned int cd) {
// set a color or add a color definition according to
// the assigned numerical ID in the additional colors list
if (cn>255) error("Error: Attempted to define more than 256 colors.\n");
if (cn<(CT_ARRAY_SIZE+32)) {
warning("Warning: Ignoring attempt to set an 'extra color' at a color ID number below the 'extra colors' range.\n");
return;
}
if (cn<=extracolorsmax) {
extracolor[cn-(CT_ARRAY_SIZE+32)] = cd;
return;
}
unsigned int * newextracolor = new unsigned int[(cn-(CT_ARRAY_SIZE+32))+1];
if (extracolor) {
for (long i = (extracolorsmax-(CT_ARRAY_SIZE+32)); i>=0; i--) newextracolor[i] = extracolor[i];
delete[] extracolor;
}
extracolor = newextracolor;
extracolorsmax = cn;
definedcolors = extracolorsmax+1;
extracolor[cn-(CT_ARRAY_SIZE+32)] = cd;
}
String Color_Table::Fig_str() {
String figstr;
for (int i=0; i<CT_ARRAY_SIZE; i++) figstr += Fig_Color(ct[i].colnum,ct[i].coldef).str();
for (long i=(CT_ARRAY_SIZE+32); i<=extracolorsmax; i++) figstr += Fig_Color(i,extracolor[i-(CT_ARRAY_SIZE+32)]).str();
return figstr;
}
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