Index of /~bryan/papers2/polymerase

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]A new form of DNA polymerase III and a copolymerase replicate a long, single-stranded primer-template - 1973.pdf2005-04-22 13:00 766K 
[ ]Mutability of DNA polymerase I: Implications for the creation of mutant DNA polymerases - 2005.pdf2006-04-28 14:00 269K 
[ ]Structure and function of DNA polymerases - 2005 - review.pdf2006-11-17 05:29 625K 
[ ]Directed evolution by in vitro compartmentalization - 2006.pdf2006-11-23 05:13 402K 
[ ]Very efficient template-primate-independent DNA synthesis by thermophilic DNA polymerase in the presence of thermophilic restriction endonuclease - 2004.pdf2008-12-24 05:43 194K 
[ ]Very efficient template or primer-independent DNA synthesis by thermophilic DNA polymerase in the presence of a thermophilic restriction endonuclease - Vent polymerase - 2004.pdf2008-12-24 05:43 194K 
[ ]Expanding the substrate repertoire of a DNA polymerase by directed evolution - 2004.pdf2009-02-07 06:45 241K 
[ ]The molecular basis of nucleotide recognition for T7 DNA polymerase - 2008.pdf2009-02-13 15:57 3.4M 
[ ]Replication by a single DNA polymerase of a stretched single-stranded DNA.pdf2009-03-08 07:06 499K 
[ ]Recent progress toward the templated synthesis and directed evolution of sequence-defined synthetic polymers - 2009.pdf2009-03-27 07:58 828K 
[ ]Glycerol nucleoside triphosphates - synthesis and polymerase substrate activities.pdf2009-05-29 04:41 79K 
[ ]The structure of bacterial RNA polymerase - geszvain_landick.pdf2009-06-28 17:11 2.7M 
[ ]A single highly mutable catalytic site amino acid is critical for DNA polymerase fidelity.pdf2009-06-28 17:11 275K 
[ ]Error-prone repair DNA polymerases in prokaryotes and eukaryotes - Goodman - review.pdf2009-06-28 17:11 519K 
[ ]Saccharomyces cerevisiae RAD30 gene for a DNA polymerase is remarkably error-prone.pdf2009-06-28 17:11 1.3M 
[ ]Structure-based combinatorial protein engineering SCOPE.pdf2009-06-28 17:11 754K 
[ ]Accidental immune system - long ago a wandering piece of DNA created a key strategy - 1998.pdf2009-06-28 17:11 75K 
[ ]A quantum mechanical investigation of possible mechanisms for the nucleotidyl transfer reaction catalyzed by DNA polymerase beta - 2007.pdf2009-06-28 17:11 353K 
[ ]Bleomycin-induced DNA repair synthesis in permeable human fibroblasts: mediation of long-patch and short-patch repair by distinct DNA polymerases.pdf2009-06-28 17:11 2.6K 
[ ]Directed evolution as a tool for understanding and optimizing nucleic acid polymerase function - Brakmann - review - 2005.pdf2009-06-28 17:11 221K 
[ ]On the processive mechanism of ecoli DNA pol I - 1978 - Matson - Capaldo-Kimball - Bambara.pdf2009-06-28 17:11 969K 
[ ]All three SOS-inducible DNA polymerases are involved in induced mutagenesis.pdf2009-06-28 17:11 236K 
[ ]Chromophore-assisted laser inactivation of proteins is mediated by the photogeneration of free radicals - Liao - Roider - D G Jay - 1994.pdf2009-06-28 17:11 1.3M 
[ ]Optimization of DNA shuffling for high fidelity recombination - Zhao - Arnold - 1997.pdf2009-06-28 17:11 42K 
[ ]The X family portrait - structural insights into biological functions of X family polymerases - 2007 - good.pdf2009-06-28 17:11 4.1M 
[ ]The conserved active site motif A of ecoli DNA polymerase I is highly mutable - 2001.pdf2009-06-28 17:11 221K 
[ ]Error-prone DNA polymerases - when making a mistake is the only way to get ahead - Rattray_Strathern_2003_review_TLS_Pol_Pol_families_signature_Ann_Rev_Genet_37_31.pdf2009-06-28 17:11 538K 
[ ]Hepatitis-B virus-associated deoxyribonucleic acid polymerase - a partial characterization by the use of chemical agents - Arnold - 1981.pdf2009-06-28 17:11 742K 
[ ]Lesion bypass by human DNA polymerase mu reveals a template-dependent, sequence-independent nucleotidyl transferase activity - Covo - Blanco - Zvi Livneh - good.pdf2009-06-28 17:11 476K 
[ ]Loss of DNA polymerase beta stacking interactions with templating purines but not pyrimidines alters catalytic efficiency and fidelity.pdf2009-06-28 17:11 1.6M 
[ ]The 3-5 exonuclease of DNA polymerase I of ecoli - contribution of each amino acid at the active site to the reaction.pdf2009-06-28 17:11 1.6M 
[ ]Translesion DNA synthesis in eukaryotes - a one or two polymerase affair.pdf2009-06-28 17:11 518K 
[ ]awesome - A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis - 2006.pdf2009-06-28 17:11 560K 
[ ]Structural basis for template-independent RNA polymerization - Tomita - Fukal - Ishitani - Ueda - Takeuchi - Vassylyev - Nureki.pdf2009-06-28 17:11 491K 
[ ]Computational enzyme design.pdf2009-06-28 17:11 3.9M 
[ ]Enzyme-DNA interactions required for efficient nucleotide incorporation and discrimination in human DNA polymerase beta.pdf2009-06-28 17:11 212K 
[ ]Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69 - Wang - Sattar - Karam - Konigsberg - Steitz - 1997.pdf2009-06-28 17:12 8.8M 
[IMG]2008-06-06_beta_clamp.png2009-06-28 17:12 10K 
[ ]Bridging the gap - a family of novel DNA polymerases that replicate faulty DNA - Johnson - Washington - Prakash.pdf2009-06-28 17:12 181K 
[ ]On the mechanism of preferential incorporation of dAMP at abasic sites in translesional DNA synthesis - role of proofreading activity of DNA polymerase and thermodynamic characterization of model template-primers containing an abasic site - 1994.pdf2009-06-28 17:12 1.2M 
[ ]Tuning and switching a DNA polymerase motor with mechanical tension - Goel - Astumian - Herschbach - good - awesome.pdf2009-06-28 17:12 590K 
[ ]Yeast Rev1 Protein Is a G Template-specific DNA Polymerase.pdf2009-06-28 17:12 316K 
[ ]excellent - The conserved active site motif A of Escherichia coli DNA polymerase I is highly mutable.pdf2009-06-28 17:12 221K 
[TXT]2008-06-03.txt2009-06-28 17:12 61K 
[ ]Adaptive mutation in ecoli - Foster.pdf2009-06-28 17:12 83K 
[ ]DNA mismatch correction - Modrich.pdf2009-06-28 17:12 1.8M 
[ ]Directed evolution of polymerase function by compartmentalized self-replication - Ghadessy.pdf2009-06-28 17:12 521K 
[ ]Going the distance - a current view of enhancer action - Blackwood - 1998.pdf2009-06-28 17:12 343K 
[ ]Mutability of strains overexpressing SOS-inducible DNA polymerases to 30 chemical mutagens.pdf2009-06-28 17:12 629K 
[ ]Prokaryotic DNA polymerase I - evolution, structure and Base Flipping mechanism for nucleotide selection - Patel - review.pdf2009-06-28 17:12 640K 
[ ]Side chains that influence fidelity at the polymerase active site of ecoli DNA polymerase I Klenow fragment - 1999.pdf2009-06-28 17:12 455K 
[ ]Specialized DNA polymerases, cellular survival, and the genesis of mutations.pdf2009-06-28 17:12 329K 
[ ]Structural basis for uracil recognition by archaeal family B DNA polymerases.pdf2009-06-28 17:12 3.3M 
[ ]possibly irrelevant - The beta-globin locus control regions - review.pdf2009-06-28 17:12 158K 
[IMG]x_family_DNA_polymerases_nt.png2009-06-28 17:12 92K 
[ ]Selective destruction of protein function by chromophore-assisted laser inactivation - DG Jay - 1988 - awesome.pdf2009-06-28 17:12 1.0M 
[ ]Structural insight into the substrate specificity of DNA polymerase mu.pdf2009-06-28 17:12 950K 
[ ]Genetically targeted chromophore-assisted light inactivation - Tour - Meijer - Zacharias - Adams - Tsien - awesome.pdf2009-06-28 17:12 846K 
[ ]Translesion synthesis DNA polymerases and control of genome stability - Shcherbakova - Fijalkowska.pdf2009-06-28 17:12 367K 
[ ]A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis.pdf2009-06-28 17:12 560K 
[ ]Kamakaka - Silencers and locus control regions - opposite sides of the same coin.pdf2009-06-28 17:12 1.3M 
[ ]Rev1 employs a novel mechanism of DNA synthesis using a protein template - Nair - Johnson - Prakash - Aggarwal.pdf2009-06-28 17:12 556K 
[ ]A movie of the RNA polymerase nucleotide addition cycle - 2009.pdf2009-09-25 12:35 479K 
[ ]The evolution of DNA polymerases with novel activities.pdf2010-01-26 09:54 834K 
[IMG]The evolution of DNA polymerases with novel activities.pdf.evolved-or-rationally-designed-polymerases.png2010-01-26 09:57 356K 
[ ]polymerase.mediawiki2010-01-26 10:02 122K 
[ ]Conformational transitions in DNA polymerase I revealed by single-molecule FRET - 2010.pdf2010-04-19 03:21 1.0M 
[ ]Single molecule measurement of the speed limit of DNA polymerase.pdf2010-06-18 09:44 1.0M 
[ ]A unified kinetic mechanism applicable to multiple DNA polymerases - 2007.pdf2010-08-12 22:38 484K 
[ ]Contribution of the Reverse Rate of the Conformational Step to Polymerase β Fidelity - 2009.pdf2010-08-12 22:38 515K 
[ ]Recent progress toward the templated synthesis and directed evolution of sequence-defined synthetic polymers - review - 2009.pdf2010-11-01 10:10 739K 
[ ]Genetic information 'created' by archaebacterial DNA polymerase - 1997.pdf2010-12-12 19:44 347K 
[ ]Evolution of tRNA nucleotidyltransferases: A small deletion generated CC-adding enzymes.pdf2010-12-12 20:26 1.3M 
[DIR]CCA-adding-enzyme/2010-12-12 20:40 -  
[ ]Primer fabrication using polymerase mediated oligonucleotide synthesis.pdf2010-12-12 21:11 1.9M 
[ ]A Single-Molecule Nanopore Device Detects DNA Polymerase Activity with Single-Nucleotide Resolution.pdf2010-12-12 21:18 164K 
[ ]Real-time DNA sequencing from single polymerase molecules - 2009.pdf2010-12-12 21:21 1.0M 
[TXT]tdt.txt2010-12-15 12:54 1.4K 
[ ]Motea-2010-Terminal deoxynucleotidyl transferase-A misguided DNA polymerase.pdf2010-12-20 18:19 3.8M 
[DIR]electrical-manipulation/2010-12-20 19:38 -  
[ ]page-9-2nd-gen-synthesis-george-church.pdf2011-01-05 10:48 2.4M 
[ ]Remote electronic control of DNA hybridization through inductive coupling to an attached metal nanocrystal antenna - Jacobson.pdf2011-01-05 11:05 211K 
[ ]Substrate recognition by the yeast Rev1 protein and DNA polymerase ζ - Howell thesis - 2008.pdf2011-02-27 07:05 3.9M 
[ ]Light controlled synthesis of nucleic acids - Pinheiro - 2010.pdf2011-06-09 17:01 5.6M 
[DIR]replicase/2011-06-24 12:40 -  
[TXT]notes2.txt2011-06-24 15:35 1.9K 
[ ]Ultrahigh-throughput screening in drop-based microfluidics for directed evolution - 2010.pdf2011-06-27 14:23 339K 
[ ]Techniques used to study the DNA polymerase reaction pathway - 2010.pdf2011-06-27 15:00 1.3M 
[DIR]tth/2011-06-27 15:46 -  
[ ]In vitro selction of a 50-purine ribonucleotide transferase ribozyme - 2007.pdf2011-06-27 20:34 608K 
[TXT]notes.txt2011-06-27 21:19 22K 
[ ]Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity - 2011.pdf2011-08-12 14:49 391K 
[ ]Light-dependent RNA polymerase - proposal - Tom Hargreaves.pdf2011-09-26 18:05 117K 
[ ]Polymerase engineering - towards the encoded synthesis of unnatural biopolymers - 2009.pdf2012-02-04 11:22 1.2M 
[ ]roadmap.pdf2012-02-21 18:25 66K 
[ ]enzyme_classifications.yaml2012-02-23 09:34 94K 
[ ]Catalytic mechanism of DNA polymerases - 2010.pdf2012-10-15 00:14 2.2M 
[ ]Measuring cation dependent DNA polymerase fidelity landscapes by deep sequencing - 2012.pdf2014-03-26 03:17 2.6M 
[ ]Structural mechanisms of accurate and mutagenic DNA replication - thesis - 2012.pdf2014-05-14 21:30 25M 
[ ]A protein transistor made of an antibody molecule and two gold nanoparticles.pdf2015-05-20 17:16 1.8M 
[ ]DNA sequencing using electrical conductance measurements of a DNA polymerase - 2013.pdf2015-05-20 17:16 3.9M 
[ ]Creative template-dependent synthesis by human polymerase mu - 2015.pdf2015-08-14 10:15 1.5M 
[ ]A highly active DNA polymerase with a fluorous core - unnatural amino acids - 2010.pdf2015-12-02 00:35 386K 
[ ]Replacing 32 proline residues by a noncanonical amino acid results in a highly active DNA polymerase - 2010.pdf2015-12-02 00:39 1.6M 
[ ]A general strategy for expanding polymerase function by droplet microfluidics - 2016.pdf2016-04-05 02:06 1.1M 
[ ]Evolving thermostable reverse transcriptase activity in a DNA polymerase scaffold - 2006.pdf2016-05-23 18:00 149K 
[ ]Taking fingerprints of DNA polymerases: multiplex enzyme profiling on DNA arrays - 2009.pdf2016-06-13 06:37 565K 
[ ]Computational evaluation of nucleotide insertion opposite expanded and widened DNA by the translesion synthesis polymerase Dpo4 - 2016.pdf2016-06-23 04:10 3.9M 
[ ]Electronic control of DNA polymerase binding and unbinding to single DNA molecules - 2009.pdf2016-07-03 12:16 3.3M 
[ ]Exploring template-independent polymerases for automated DNA synthesis - 2010.pdf2016-07-04 15:13 237K 
[ ]Mutant Taq DNA polymerases with improved elongation ability as a useful reagent for genetic engineering - 2014.pdf2016-07-17 11:13 3.0M 
[ ]Modified nucleoside triphosphates for in-vitro selection techniques - 2016.pdf2016-07-17 11:24 1.6M 
[ ]DNA polymerases engineered by directed evolution to incorporate non-standard nucleotides - review - 2014.pdf2016-07-17 12:16 1.6M 
[ ]Directed polymerase evolution - review - 2013.pdf2016-07-17 12:17 1.4M 
[ ]Polymerase-DNA interactions and enzymatic activity: multi-parameter analysis with electro-switchable biosurfaces - 2015.pdf2016-07-17 12:21 1.6M 
[TXT]Artificial genetic sets composed of size-expanded base pairs - review - 2013.html2016-07-17 12:31 230K 
[ ]Directed evolution of DNA polymerases for next generation sequencing - 2010.pdf2016-07-17 12:49 755K 
[ ]DNA polymerase conformational dynamics and the role of fidelity-conferring residues: Insights from computational simulations - 2016.pdf2016-07-19 12:05 3.1M 
[ ]Molecular events during translocation and proofreading extracted from 200 static structures of DNA polymerase - 2016.pdf2016-07-19 12:13 11M 
[DIR]zhong-ren-molecular-events-during-200/2016-07-20 12:14 -  
[ ]polymerases.pdb.tar.xz2016-07-21 09:15 41M 
[ ]Protocol for terminal deoxynucleotidyl transferase, recombinant.pdf2016-07-21 10:17 414K 
[ ]Recent patents of gene sequences relative to DNA polymerases - 2008.pdf2016-07-21 11:32 663K 
[TXT]get.txt2016-07-22 12:51 21K 
[ ]polymerase-images.zip2016-07-23 10:30 3.5M 
[DIR]polymerase-images/2016-07-23 10:31 -  
[ ]Dynamic blue light-inducible T7 RNA polymerases (Opto-T7RNAPs) for precise spatiotemporal gene expression control - 2017.pdf2017-05-25 06:41 1.6M 
[ ]Processive incorporation of deoxynucleoside triphosphate analogs by single-molecule DNA polymerase I (Klenow fragment) nanocircuits - 2015.pdf2017-11-08 05:29 1.0M 
[DIR]molecular-events/2018-01-12 21:00 -  
[ ]High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing - 2018.pdf2018-05-03 11:17 1.0M 
[TXT]url.txt2018-05-03 11:17 747  
[ ]A processing protein chimera introduces mutations across defined DNA regions in vivo - 2018.pdf2018-08-04 06:27 1.1M 
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