@article{clarke_continuous_2009,
	title = {Continuous base identification for single-molecule nanopore {DNA} sequencing},
	journal = {Nature Nanotechnology},
	author = {J. Clarke and H. C. Wu and L. Jayasinghe and A. Patel and S. Reid and H. Bayley},
	year = {2009}
},

@article{dekker_solid-state_2007,
	title = {Solid-state nanopores},
	volume = {2},
	number = {4},
	journal = {Nature Nanotechnology},
	author = {C. Dekker},
	year = {2007},
	pages = {209--215}
},

@article{lagerqvist_fast_2006,
	title = {Fast {DNA} sequencing via transverse electronic transport},
	volume = {6},
	number = {4},
	journal = {Nano letters},
	author = {J. Lagerqvist and M. Zwolak and M. Di Ventra},
	year = {2006},
	pages = {779}
},

@article{ryan_toward_2007,
	title = {Toward nanoscale genome sequencing},
	volume = {25},
	number = {9},
	journal = {Trends in Biotechnology},
	author = {D. Ryan and M. Rahimi and J. Lund and R. Mehta and B. A. Parviz},
	year = {2007},
	pages = {385--389}
},

@article{healy_nanopore-based_2007,
	title = {Nanopore-based single-molecule {DNA} analysis},
	volume = {2},
	number = {4},
	journal = {Nanomedicine},
	author = {K. Healy},
	year = {2007},
	pages = {459--481}
},

@article{chen_nanopore_2003,
	title = {Nanopore sequencing of polynucleotides assisted by a rotating electric field},
	volume = {82},
	number = {8},
	journal = {{APPLIED} {PHYSICS} {LETTERS}},
	author = {C. M. Chen and E. H. Peng},
	year = {2003}
},

@article{lee_rapid_2007,
	title = {Rapid {DNA} sequencing by direct nanoscale reading of nucleotide bases on individual {DNA} chains},
	journal = {New High Throughput Technologies for {DNA} Sequencing and Genomics},
	author = {J. W. Lee and A. Meller},
	year = {2007},
	pages = {245–64}
},

@article{bockelmann_theoretical_2008,
	title = {Theoretical Study of {Sequence-Dependent} Nanopore Unzipping of {DNA}},
	volume = {94},
	number = {7},
	journal = {Biophysical Journal},
	author = {U. Bockelmann and V. Viasnoff},
	year = {2008},
	pages = {2716--2724}
},

@article{bayley_sequencing_2006,
	title = {Sequencing single molecules of {DNA}},
	volume = {10},
	number = {6},
	journal = {Current opinion in chemical biology},
	author = {H. Bayley},
	year = {2006},
	pages = {628--637}
},

@article{qamar_canatomic_2008,
	title = {Can an Atomic Force Microscope Sequence {DNA} Using a Nanopore?},
	volume = {94},
	number = {4},
	journal = {Biophysical Journal},
	author = {S. Qamar and P. M. Williams and S. M. Lindsay},
	year = {2008},
	pages = {1233--1240}
},

@article{gershow_recapturing_2007,
	title = {Recapturing and trapping single molecules with a solid-state nanopore},
	volume = {2},
	number = {12},
	journal = {Nature Nanotechnology},
	author = {M. Gershow and J. A. Golovchenko},
	year = {2007},
	pages = {775--779}
},

@article{shendure_overview_2008,
	title = {Overview of {DNA} sequencing strategies},
	journal = {Curr Protoc Mol Biol},
	author = {J. A. Shendure and G. J. Porreca and G. M. Church},
	year = {2008}
},

@book{young_nanopore_2006,
	title = {Nanopore flow cells},
	publisher = {Google Patents},
	author = {J. E. Young},
	year = {2006}
},

@article{rusk_cheap_2009,
	title = {Cheap third-generation sequencing},
	volume = {6},
	number = {4},
	journal = {Nature Methods},
	author = {N. Rusk},
	year = {2009},
	pages = {244}
},

@article{bell_nanoscale_2006,
	title = {Nanoscale Engineering with a {TEM} for {DNA} Sequencing},
	volume = {12},
	number = {S02},
	journal = {Microscopy and Microanalysis},
	author = {D. C. Bell and M. J. Kim and M. Wanunu and A. Meller},
	year = {2006},
	pages = {638--639}
},

@article{maglia_enhanced_2008,
	title = {Enhanced translocation of single {DNA} molecules through a-hemolysin nanopores by manipulation of internal charge},
	volume = {105},
	number = {50},
	journal = {Proceedings of the National Academy of Sciences},
	author = {G. Maglia and M. R. Restrepo and E. Mikhailova and H. Bayley},
	year = {2008},
	pages = {19720}
},

@article{schloss_to_2008,
	title = {How to get genomes at one ten-thousandth the cost},
	volume = {26},
	number = {10},
	journal = {Nature Biotechnology},
	author = {J. A. Schloss},
	year = {2008},
	pages = {1113--1115}
},

@book{harnack_method_2006,
	title = {A method of fabricating a polymeric membrane having at least one pore},
	publisher = {{EP} Patent 1,721,657},
	author = {O. Harnack and S. D. {GmbH} and A. Yasuda and S. D. {GmbH}},
	year = {2006}
},

@article{butler_single-molecule_2008,
	title = {Single-molecule {DNA} detection with an engineered {MspA} protein nanopore},
	volume = {105},
	number = {52},
	journal = {Proceedings of the National Academy of Sciences},
	author = {T. Z. Butler and M. Pavlenok and I. M. Derrington and M. Niederweis and J. H. Gundlach},
	year = {2008},
	pages = {20647}
},

@article{lin_recent_2008,
	title = {Recent Patents and Advances in the {Next-Generation} Sequencing Technologies},
	volume = {1},
	journal = {Recent Pat Biomed Eng},
	author = {B. Lin and J. Wang and Y. Cheng},
	year = {2008},
	pages = {60--67}
},

@article{bokhari_parallel_2005,
	title = {A parallel graph decomposition algorithm for {DNA} sequencing with nanopores},
	volume = {21},
	number = {7},
	journal = {Bioinformatics},
	author = {S. H. Bokhari and J. R. Sauer},
	year = {2005},
	pages = {889--896}
},

@article{gierhart_nanopore_2008,
	title = {Nanopore with transverse nanoelectrodes for electrical characterization and sequencing of {DNA}},
	volume = {132},
	number = {2},
	journal = {Sensors \& Actuators: B. Chemical},
	author = {B. C. Gierhart and D. G. Howitt and S. J. Chen and Z. Zhu and D. E. Kotecki and R. L. Smith and S. D. Collins},
	year = {2008},
	pages = {593--600}
},

@article{yu_nanopore_2009,
	title = {Nanopore Unzipping Of Ultra-long Dna Repeats For Single-molecule Mutation Detection},
	volume = {96},
	number = {{3S1}},
	journal = {Biophysical Journal},
	author = {Z. Yu and B. {McNally} and A. Meller},
	year = {2009},
	pages = {645--645}
},

@article{rhee_nanopore_2006,
	title = {Nanopore sequencing technology: research trends and applications},
	volume = {24},
	number = {12},
	journal = {Trends in Biotechnology},
	author = {M. Rhee and M. A. Burns},
	year = {2006},
	pages = {580--586}
},

@article{ling_hybridization-assisted_2005,
	title = {Hybridization-assisted nanopore sequencing of {DNA}},
	journal = {{USPTO,} patent disclosure},
	author = {X. S. Ling and A. Pertsinidis},
	year = {2005}
},

@article{sigalov_detection_2008,
	title = {Detection of {DNA} sequences using an alternating electric field in a nanopore capacitor},
	volume = {8},
	number = {1},
	journal = {Nano Lett},
	author = {G. Sigalov and J. Comer and G. Timp and A. Aksimentiev},
	year = {2008},
	pages = {56--63}
},

@article{benner_sequence-specific_2007,
	title = {Sequence-specific detection of individual {DNA} polymerase complexes in real time using a nanopore},
	volume = {2},
	number = {11},
	journal = {Nature Nanotechnology},
	author = {S. Benner and R. J. A. Chen and N. A. Wilson and R. {Abu-Shumays} and N. Hurt and K. R. Lieberman and D. W. Deamer and W. B. Dunbar and M. Akeson},
	year = {2007},
	pages = {718--724}
},

@book{service_gene_2006,
	title = {Gene sequencing: the race for the\$ 1000 genome},
	volume = {311},
	author = {R. F. Service},
	year = {2006},
	pages = {1544--1546}
},

@book{ling_hybridization_2006,
	title = {{HYBRIDIZATION} {ASSISTED} {NANOPORE} {SEQUENCING}},
	publisher = {Google Patents},
	author = {X. S. Ling and B. Bready},
	year = {2006}
},

@article{shendure_advanced_2004,
	title = {Advanced sequencing technologies: methods and goals},
	volume = {5},
	number = {5},
	journal = {Nature Reviews Genetics},
	author = {J. Shendure and R. D. Mitra and C. Varma and G. M. Church},
	year = {2004},
	pages = {335--344}
},

@article{peng_reverse_2009,
	title = {Reverse {DNA} translocation through a solid-state nanopore by magnetic tweezers},
	volume = {20},
	issn = {0957-4484},
	url = {http://www.iop.org/EJ/abstract/0957-4484/20/18/185101},
	abstract = {Voltage-driven {DNA} translocation through nanopores has attracted wide
interest for many potential applications in molecular biology and
biotechnology. However, it is intrinsically difficult to control the
{DNA} motion in standard {DNA} translocation processes in which a strong
electric field is required in drawing {DNA} into the pore, but it also
leads to uncontrollable fast {DNA} translocation. Here we explore a new
type of {DNA} translocation. We dub it 'reverse {DNA} translocation', in
which the {DNA} is pulled through a nanopore mechanically by a magnetic
bead, driven by a magnetic-field gradient. This technique is
compatible with simultaneous ionic current measurements and is
suitable for multiple nanopores, paving the way for large scale
applications. We report the first experiment of reverse {DNA}
translocation through a solid-state nanopore using magnetic tweezers.},
	number = {18},
	journal = {Nanotechnology},
	author = {Hongbo Peng and Xinsheng Sean Ling},
	year = {2009},
	pages = {185101}
},

@article{soni_progress_2007,
	title = {Progress toward ultrafast {DNA} sequencing using solid-state nanopores},
	volume = {53},
	number = {11},
	journal = {Clinical Chemistry},
	author = {G. V. Soni and A. Meller},
	year = {2007},
	pages = {1996}
},

@article{rhee_nanopore_2007,
	title = {Nanopore sequencing technology: nanopore preparations},
	volume = {25},
	number = {4},
	journal = {Trends in Biotechnology},
	author = {M. Rhee and M. A. Burns},
	year = {2007},
	pages = {174--181}
},

@article{winters-hilt_nanopore_2007,
	title = {Nanopore current transduction analysis of protein binding to non-terminal and terminal {DNA} regions: analysis of transcription factor binding, retroviral {DNA} terminus dynamics, and retroviral {integrase-DNA} binding},
	volume = {8},
	number = {Suppl 7},
	journal = {{BMC} Bioinformatics},
	author = {S. {Winters-Hilt} and A. Davis and I. Amin and E. Morales},
	year = {2007},
	pages = {S10}
},

@article{croquette_sensing_2008,
	title = {Sensing Single Base Incorporation with Nanopore Micromanipulation},
	author = {V. Croquette},
	year = {2008}
},

@article{branton_potential_2008,
	title = {The potential and challenges of nanopore sequencing},
	volume = {26},
	number = {10},
	journal = {Nature Biotechnology},
	author = {D. Branton and D. W. Deamer and A. Marziali and H. Bayley and S. A. Benner and T. Butler and M. Di Ventra and S. Garaj and A. Hibbs and X. Huang},
	year = {2008},
	pages = {1146--1153}
},

@article{von_bubnoff_next-generation_2008,
	title = {Next-generation sequencing: the race is on},
	volume = {132},
	number = {5},
	journal = {Cell},
	author = {A. von Bubnoff},
	year = {2008},
	pages = {721--723}
},

@article{derrington_nanopore_2009,
	title = {Nanopore Sequencing with {MspA}},
	volume = {96},
	number = {{3S1}},
	journal = {Biophysical Journal},
	author = {I. Derrington and T. Butler and M. Pavlenok and M. Collins and M. Niederweis and J. Gundlach},
	year = {2009},
	pages = {316--316}
},

@article{blow_dna_2008,
	title = {{DNA} sequencing: generation next-next},
	volume = {5},
	journal = {Nature Methods},
	author = {N. Blow},
	year = {2008},
	pages = {267--274}
},

@article{luo_sequence_2008,
	title = {Sequence dependence of {DNA} translocation through a nanopore},
	volume = {100},
	number = {5},
	journal = {Physical Review Letters},
	author = {K. Luo and T. {Ala-Nissila} and S. C. Ying and A. Bhattacharya},
	year = {2008},
	pages = {58101--58101}
},

@article{shaffer_next-generation_2007,
	title = {Next-generation sequencing outpaces expectations},
	volume = {25},
	number = {2},
	journal = {Nature Biotechnology},
	author = {C. Shaffer},
	year = {2007},
	pages = {149}
},

@article{gupta_single-molecule_2009,
	title = {Single-molecule {DNA} sequencing technologies for future genomics research},
	volume = {26},
	number = {11},
	journal = {Trends in Biotechnology},
	author = {P. K. Gupta},
	year = {2009},
	pages = {602--611}
},

@article{astier_toward_2005,
	title = {Toward single molecule {DNA} sequencing: Direct identification of ribonucleoside and deoxyribonucleoside 5'-monophosphates by using an engineered protein nanopore equipped with a molecular adapter},
	volume = {309},
	journal = {Science},
	author = {Y. Astier and O. Braha and H. Bayley},
	year = {2005},
	pages = {1728--1732}
},

@book{barth_apparatus_2008,
	title = {Apparatus and method for threading a biopolymer through a nanopore},
	publisher = {Google Patents},
	author = {P. W. Barth and C. A. Myerholtz},
	year = {2008}
},

@article{luo_heteropolymer_2007,
	title = {Heteropolymer translocation through nanopores},
	volume = {126},
	journal = {The Journal of chemical physics},
	author = {K. Luo and T. {Ala-Nissila} and S. C. Ying and A. Bhattacharya},
	year = {2007},
	pages = {145101}
},

@article{cockroft_single-molecule_2008,
	title = {A single-molecule nanopore device detects {DNA} polymerase activity with single-nucleotide resolution},
	volume = {130},
	number = {3},
	journal = {Journal of the American Chemical Society},
	author = {S. L. Cockroft and J. Chu and M. Amorin and H. Bayley and M. R. Ghadiri},
	year = {2008},
	pages = {818}
},

@article{aksimentiev_microscopic_2004,
	title = {Microscopic kinetics of {DNA} translocation through synthetic nanopores},
	volume = {87},
	number = {3},
	journal = {Biophysical journal},
	author = {A. Aksimentiev and J. B. Heng and G. Timp and K. Schulten},
	year = {2004},
	pages = {2086--2097}
}