BCM Search Launcher: General Protein Sequence/Pattern Searches

BCM Search Launcher: General Protein Sequence/Pattern Searches

Cut and paste protein sequence here (raw sequence only; no header, etc.);
Maximum sequence length is 7000 aa.

Sequence name/identifier (optional):
Email address (when required):

Choose search method / database:
[H] [O] [P] [E] = [H]:Help/description; [O]:full Options form; [P]:search Parameters; [E]:Example search
See Also: Species-Specific Protein Sequence Search Page
WU-BLASTP+BEAUTY / nr protein - Warren Gish's BLAST with gapped alignments: with BEAUTY post-processing (WU/BCM). [H] [O] [P] [E]
BLASTP+BEAUTY / nr protein - NCBI's Gapped BLASTP with BEAUTY: post-processing (BCM) [H] [O] [P] [E]
BLASTP / nr protein - NCBI's Gapped BLASTP with multiple sequence: alignment view (BCM) [H] [O] [P] [E]
FASTA / nr protein - W.R.Pearson's FASTA search with BEAUTY: post-processing (UV/BCM). [H] [O] [P] [E]
TBLASTN / nr dna - query vs. 6-frame translation of nr dna using Gapped TBLASTN: with Entrez & SRS links (NCBI/BCM) [H] [O] [P] [E]
TBLASTN / dbest - query vs. 6-frame translation of dbest using Gapped BLASTN: with Entrez & SRS links (NCBI/BCM) [H] [O] [P] [E]
BEAUTY / CRSeqAnnot - Seq family and domain information added to BLAST: searches of the BCM CRSeqAnnot DB (BCM) [H] [O] [P] [E]
FASTA-SWAP / EC Pattern DB - FASTA-based pattern db search (BCM) [H] [O] [P] [E]
FASTA-SWAP / PIMA Pattern DB - FASTA-based pattern db search (BCM) [H] [O] [P] [E]
PPSEARCH / PROSITE Pattern DB - (EBI) [H] [O] [P] [E]
BLOCKS Search / BLOCKS - (FHCRC) [H] [O] [P] [E]
COGNITOR / COG - Clusters of Orthologous Groups (NCBI) [H] [O] [E]
The following servers return search results via Email:
BLASTP / SBASE annotated domains - (ICGEB, Email search) [H] [O] [P] [E]
BLITZ / SwissProt - (EMBL, Email search) [H] [O] [P] [E]
MPsrch / nr protein - Smith Waterman (Aneda, Email search) [H] [O] [P] [E]
SSEARCH / SwissProt - (EERIE, Email search) [H] [O] [P]