genes going sideways

From: Damien Broderick (d.broderick@english.unimelb.edu.au)
Date: Thu Jun 20 2002 - 23:23:23 MDT


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Theory Challenges Darwin Doctrine Of
                       Common Descent

            The driving force in evolving cellular life on Earth has
            been horizontal gene transfer, in which the acquisition
            of alien cellular components, including genes and
            proteins, works to promote the evolution of recipient
            cellular entities.

            This is the theory of Carl Woese, a microbiologist at the
            University of Illinois at Urbana-Champaign.

            Woese presents his theory of cellular evolution, which
            challenges long-held traditions and beliefs of biologists,
            in today's issue of the Proceedings of the National
            Academy of Sciences.

            Life did not begin with one primordial cell, Woese's
            theory holds. Instead, there were initially at least three
            simple types of loosely constructed cellular
            organizations.

            They swam in a pool of genes, evolving in a communal
            way that aided one another in bootstrapping into the
            three distinct types of cells by sharing their evolutionary
            inventions.

            Cellular evolution, Woese argues, began in a communal
            environment in which the loosely organized cells took
            shape through extensive horizontal gene transfer.

            Such a transfer previously had been recognized as
            having a minor role in evolution, but the arrival of
            microbial genomics, Woese says, is shedding a more
            accurate light. Horizontal gene transfer, he argues, has
            the capacity to rework entire genomes. With simple
            primitive entities, this process can "completely erase an
            organismal genealogical trace."

            His theory challenges the longstanding Darwinian
            assumption known as the Doctrine of Common Descent
            -- that all life on Earth has descended from one original
            primordial form.

            "We cannot expect to explain cellular evolution if we
            stay locked in the classical Darwinian mode of
            thinking," Woese says. "The time has come for biology
            to go beyond the Doctrine of Common Descent."

            "Neither it nor any variation of it can capture the tenor,
            the dynamic, the essence of the evolutionary process
            that spawned cellular organization," Woese writes in his
            paper.

            Going against traditional thinking is not new to Woese,
            a recipient of the National Medal of Science (2000), and
            holder of the Stanley O. Ikenberry Endowed Chair at
            Illinois.

            In the late 1970s, Woese identified the Archaea, a group
            of microorganisms that thrive primarily in extremely
            harsh environments, as a separate life form from the
            planet's two long-accepted lines -- the typical bacteria
            and the eukaryotes (creatures like animals, plants, fungi
            and certain unicellular organisms, whose cells have a
            visible nucleus).

            His discovery eventually led to a revision of biology
            books around the world.

            The three primary divisions of life now comprise the
            familiar bacteria and eukaryotes, along with the
            Archaea. Woese argues that these three life forms
            evolved separately but exchanged genes, which he
            refers to as inventions, along the way.

            He rejects the widely-held notion that endosymbiosis
            (which led to chloroplasts and mitochondria) was the
            driving force in the evolution of the eukaryotic cell
            itself or that it was a determining factor in cellular
            evolution, because that approach assumes a beginning
            with fully evolved cells.

            His theory follows years of analysis of the Archaea and
            a comparison with bacterial and eukaryote cell lines.

            "The individual cell designs that evolved in this way are
            nevertheless fundamentally distinct, because the initial
            conditions in each case are somewhat different," Woese
            writes in his introduction. "As a cell design becomes
            more complex and interconnected a critical point is
            reached where a more integrated cellular organization
            emerges, and vertically generated novelty can and does
            assume greater importance."

            Woese calls this critical point in a cell's evolutionary
            course the Darwinian Threshold, a time when a
            genealogical trail, or the origin of a species, begins.
            From this point forward, only relatively minor changes
            can occur in the evolution of the organization of a
            given type of cell.

            To understand cellular evolution, one must go back
            beyond the Darwinian Threshold, Woese said.

            His argument is built around evidence "from the three
            main cellular information processing systems" --
            translation, transcription and replication -- and Woese
            suggests that cellular evolution progressed in that order,
            with translation leading the way.

            The pivotal development in the evolution of modern
            protein-based cells, Woese says, was the invention of
            symbolic representation on the molecular level -- that
            is, the capacity to "translate" nucleic acid sequence into
            amino acid sequence.

            Human language is another example of the evolutionary
            potential of symbolic representation, he argues.

            "It has set Homo sapiens entirely apart from its
            (otherwise very close) primitive relatives, and it is
            bringing forth a new level of biological organization,"
            Woese writes.

            The advent of translation, he says, caused various
            archaic nucleic-based entities to begin changing into
            proteinaceous ones, emerging as forerunners of modern
            cells as genes and other individual components were
            exchanged among them.

            The three modern types of cellular organization
            represent a mosaic of relationships: In some ways, one
            pair of them will appear highly similar; in others, a
            different pair will.

            This, Woese says, is exactly what would be expected
            had they individually begun as distinct entities, but
            during their subsequent evolutions they had engaged in
            genetic cross-talk -- a commerce of genes.

            [Contact: Jim Barlow]

            18-Jun-2002



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