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|
{
"translatorID": "ba10b5bc-562f-11e1-b20d-a3084924019b",
"label": "Nuclear Receptor Signaling",
"creator": "Aurimas Vinckevicius",
"target": "^https?://[^/]*nursa.org/(article|nrs|abstract)",
"minVersion": "3.0",
"maxVersion": "",
"priority": 100,
"inRepository": true,
"translatorType": 4,
"browserSupport": "gcsibv",
"lastUpdated": "2014-03-03 22:02:54"
}
/*
Nuclear Receptor Signaling Translator
Copyright (C) 2012 Aurimas Vinckevicius
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
/*
Translator for Nuclear Receptor Signaling journal. Example URLs:
Multiple:
http://www.nursa.org/nrs.cfm?detail=Perspectives&journalVolume=9
http://www.nursa.org/nrs.cfm?detail=Reviews&journalVolume=9
http://www.nursa.org/nrs.cfm?detail=Most%20Viewed&journalVolume=9
http://www.nursa.org/nrs.cfm?detail=Methods&journalVolume=9
Journal Article:
http://www.nursa.org/abstract.cfm?doi=10.1621/nrs.07008
http://www.nursa.org/article.cfm?doi=10.1621/nrs.09001
*/
function relativeToAbsolute(doc, url) {
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return doc.location.toString();
}
//check whether it's not already absolute
if(url.match(/^\w+:\/\//)) {
return url;
}
if(url.indexOf('/') == 0) {
//relative to root
return doc.location.protocol + '//' + doc.location.host +
( (doc.location.port.length)?':' + doc.location.port:'' ) +
url;
} else {
//relative to current directory
var location = doc.location.toString();
if( location.indexOf('?') > -1 ) {
location = location.slice(0, location.indexOf('?'));
}
return location.replace(/([^\/]\/)[^\/]+$/,'$1') + url;
}
}
function detectWeb(doc, url) {
if( url.match('nrs.cfm') &&
url.match(/detail=(perspectives|reviews|most%20viewed|methods)(&|$)/i) ) {
return 'multiple';
} else if( !doc.title.match(/^Error/i) &&
doc.title.trim().toLowerCase() != 'nursa |' ) {
return 'journalArticle';
}
}
function doWeb(doc, url) {
var namespace = doc.documentElement.namespaceURI;
var nsResolver = namespace ? function(prefix) {
if (prefix == 'x') return namespace; else return null;
} : null;
if( detectWeb(doc, url) == 'multiple' ) {
var items = Zotero.Utilities.xpath(doc, '//div[@class="articleItemFull"]');
var title, itemUrl;
var selectFrom = new Object();
for( var i in items ) {
title = Zotero.Utilities.xpathText(items[i], './i[text()="Nucl Recept Signal"]/preceding-sibling::node()', null, ' ');
itemUrl = Zotero.Utilities.xpath(items[i], './a[text()="Full Text"]').shift();
if(title && itemUrl) {
title = Zotero.Utilities.trimInternal( title.slice(title.indexOf(')')+1).trim() );
selectFrom[relativeToAbsolute(doc, itemUrl.href)] = title;
}
}
Zotero.selectItems(selectFrom,
function(selectedItems) {
if( selectedItems == null ) return true;
var urls = new Array();
for( var item in selectedItems ) {
urls.push(item);
}
Zotero.Utilities.processDocuments(urls,
function(newDoc) {
doWeb(newDoc, newDoc.location.href)
},
function() { Zotero.done(); });
});
} else {
//load full text instead of abstract to get the full auhor names
if( url.match('abstract.cfm') ) {
Zotero.Utilities.processDocuments(url.replace(/abstract.cfm/,'article.cfm'),
function(newDoc) {
doWeb(newDoc, newDoc.location.href)
},
function() { Zotero.done(); });
return null;
}
var item = new Zotero.Item('journalArticle');
item.title = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"articleTitle")]').trim();
var authors = doc.evaluate('//div[@class="topAuthors"]//span', doc, nsResolver, XPathResult.ANY_TYPE, null);
var author;
while( author = authors.iterateNext() ) {
author = author.textContent.trim().replace(/\s+and$/,'');
item.creators.push( Zotero.Utilities.cleanAuthor(author, 'author', false) );
}
item.publicationTitle = 'Nuclear Receptor Signaling';
item.journalAbbreviation = 'Nucl. Recept. Signaling';
var published = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"bottomHeader")]/p[1]').trim();
var pubDelim = 'Published:';
if( published && published.indexOf(pubDelim) != -1 ) {
item.date = published.slice( published.lastIndexOf(pubDelim) + pubDelim.length ).trim();
}
item.volume = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"volumeCiteInfo")][2]/b');
var page = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"volumeCiteInfo")][2]/text()[2]');
if(page) {
item.pages = page.replace(/\W/g,'');
}
item.abstractNote = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"abstract")]/p', null, "\n");
var doi = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"bottomHeader")]/p[3]/text()[normalize-space()]');
if(doi) {
item.DOI = doi.trim();
}
item.url = url;
item.ISSN = "1550-7629";
var rights = Zotero.Utilities.xpathText(doc, '//div[contains(@class,"bottomHeader")]/p[2]');
if(rights) {
item.rights = rights;
}
item.accessDate = 'CURRENT_TIMESTAMP';
var pdfURL = Zotero.Utilities.xpath(doc, '//div[span/text() = "Download PDF"]/a').shift();
if(pdfURL) {
item.attachments = [{
url: relativeToAbsolute(doc, pdfURL.href),
title: 'Full Text PDF',
mimeType: 'application/pdf'}];
}
item.complete();
}
}
/** BEGIN TEST CASES **/
var testCases = [
{
"type": "web",
"url": "http://www.nursa.org/article.cfm?doi=10.1621/nrs.09002",
"items": [
{
"itemType": "journalArticle",
"creators": [
{
"firstName": "Stephen",
"lastName": "Safe",
"creatorType": "author"
},
{
"firstName": "Kyounghyun",
"lastName": "Kim",
"creatorType": "author"
},
{
"firstName": "Xi",
"lastName": "Li",
"creatorType": "author"
},
{
"firstName": "Syng-Ook",
"lastName": "Lee",
"creatorType": "author"
}
],
"notes": [],
"tags": [],
"seeAlso": [],
"attachments": [
{
"url": "http://www.nursa.org/retrieveFile.cfm?type=NRS&file=nrs09002.pdf",
"title": "Full Text PDF",
"mimeType": "application/pdf"
}
],
"title": "NR4A orphan receptors and cancer",
"publicationTitle": "Nuclear Receptor Signaling",
"journalAbbreviation": "Nucl. Recept. Signaling",
"date": "March 18, 2011",
"volume": "9",
"pages": "e002",
"abstractNote": "NR4A orphan receptors are members of the nuclear receptor (NR) superfamily of transcription factors and include NR4A1 (Nur77, TR3, NGFI-B), NR4A2 (Nurr1), and NR4A3 (Nor1). NR4A receptors are immediate-early genes induced by multiple stimuli and modulate gene expression by interacting as monomers or homodimers to NGFI-B response elements (NBREs) and Nur-responsive elements (NuREs), respectively. NR4A1 and NR4A2 (but not NR4A3) also form heterodimers with the retinoic acid X receptor (RXR) that bind a DR5 motif, and there is evidence that NR4A1 can activate or deactivate gene expression in cancer cells through interactions with DNA-bound specificity protein 1(Sp1) transcription factor. NR4A receptors play important roles in cellular homeostasis and disease, and there is increasing evidence that they exhibit pro-oncogenic activity in most tumors and thereby represent novel targets for chemotherapeutic drugs. Many apoptosis-inducing drugs induce nuclear export of NR4A1 and activate apoptosis in cancer cell lines through formation of extranuclear complexes including a pro-apoptotic mitochondrial NR4A1-bcl-2 complex. 1,1-Bis(3'-indolyl)-1-(p-substituted phenyl)methane analogs exhibit structure-dependent activation or deactivation of nuclear NR4A1 to induce apoptosis, whereas cytosporone B and structural analogs activate both nuclear and extranuclear NR4A1-dependent pro-apoptotic pathways. The roles of NR4A2 and NR4A3 in carcinogenesis are less well-defined; however, there is evidence suggesting that NR4A receptors are important targets for development of new mechanism-based anticancer drugs.",
"DOI": "10.1621/nrs.09002",
"url": "http://www.nursa.org/article.cfm?doi=10.1621/nrs.09002",
"ISSN": "1550-7629",
"rights": "Copyright © 2011, Safe et al. This is an open-access article distributed under the terms of the Creative Commons Non-Commercial Attribution License, which permits unrestricted non-commercial use distribution and reproduction in any medium, provided the original work is properly cited.",
"accessDate": "CURRENT_TIMESTAMP",
"libraryCatalog": "Nuclear Receptor Signaling"
}
]
}
]
/** END TEST CASES **/
|
