/sim/src/
../
BUGS
CHANGENOTES.txt
Doxyfile
Makefile
Makefile.am
Makefile.win32
MergingParameterFiles
README
VQT.py
allocate.c
allocate.h
amber_patterns.c
amber_patterns.h
batchsim.py
bend.py
bending.parms
branch
cube.mmp
debug.h
distutils_compile_options.py
dynamics.c
dynamics.h
experimental
findpyrex.py
globals.c
globals.h
glviewer.c
hashtable.c
hashtable.h
interpolate.c
interpolate.h
jigs.c
jigs.h
libpython23.a.gz
libpython24.a.gz
lin-alg.c
lin-alg.h
makehelp.py
merge.parameters.py
mergemmpxyz.py
minimize.c
minimize.h
minstructure.c
minstructure.h
newtables.c
newtables.h
onetest.py
pam5_patterns.c
pam5_patterns.h
parameters
part.c
part.h
pattern.c
pattern.h
potential.c
potential.h
printGromacsTopology.c
printGromacsTopology.h
printers.c
printers.h
read_amber_itp.c
read_amber_itp.h
readers.c
readers.h
readmmp.c
readmmp.h
readxyz.c
readxyz.h
regression.py
regression.sh
rigid-ode.c
rigid-ode.h
rigid.c
rigid.h
runtest.py
runtest.sh
setup.py
sim.pyx
simhelp.c
simulator.c
simulator.dev
simulator.h
stretch.parms
stretch.py
strtok_r.c
structcompare.c
structcompare.h
tests.py
tests
writemovie.c
writemovie.h