mmpformat 080327 required; 080412 preferred
kelvin 300
group (View Data)
info opengroup open = True
csys (HomeView) (1.000000, 0.000000, 0.000000, 0.000000) (10.000000) (0.000000, 0.000000, 0.000000) (1.000000)
csys (LastView) (0.497770, -0.498682, 0.500869, 0.502664) (96.962661) (-45.356801, -18.147566, -36.005436) (1.000000)
egroup (View Data)
group (nanocube_PAM3_not_equilibrium)
info opengroup open = True
group (Ligated DNA Cube1) DnaGroup
info opengroup open = False
group (blue) DnaStrand
info opengroup open = True
forward_ref (327403760) # DnaStrandMarker (DnaMarker-98)
mol (DnaStrandChunk1835) def
atom 1 (202) (78061, 78120, -5747) def
atom 2 (201) (79496, 73395, 8652) def
bond1 1
bond_direction 1 2
atom 3 (202) (75731, 72823, 10983) def
bond1 2
bond_direction 2 3
atom 4 (201) (79871, 70904, 12792) def
bond1 3
bond_direction 3 4
atom 5 (202) (77417, 68126, 14939) def
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bond_direction 4 5
atom 6 (201) (82367, 68365, 15940) def
bond1 5
bond_direction 5 6
atom 7 (202) (82039, 64641, 18015) def
bond1 6
bond_direction 6 7
atom 8 (201) (85899, 67699, 19109) def
bond1 7
bond_direction 7 8
atom 9 (202) (87722, 64454, 21231) def
bond1 8
bond_direction 8 9
atom 10 (201) (89042, 69176, 22426) def
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bond_direction 9 10
atom 11 (202) (92351, 67592, 24657) def
bond1 10
bond_direction 10 11
atom 12 (201) (90651, 72223, 25773) def
bond1 11
bond_direction 11 12
atom 13 (202) (94194, 72912, 28077) def
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bond_direction 12 13
atom 14 (201) (90071, 75697, 29039) def
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bond_direction 13 14
atom 15 (202) (92477, 78368, 31370) def
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bond_direction 14 15
atom 16 (201) (87488, 78217, 32223) def
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bond_direction 15 16
atom 17 (202) (87825, 81798, 34547) def
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bond_direction 16 17
atom 18 (201) (83870, 78733, 35380) def
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bond_direction 17 18
atom 19 (202) (82021, 81838, 37700) def
bond1 18
bond_direction 18 19
atom 20 (201) (80620, 77039, 38549) def
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bond_direction 19 20
atom 21 (202) (77288, 78462, 40863) def
bond1 20
bond_direction 20 21
atom 22 (201) (78974, 73751, 41726) def
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bond_direction 21 22
atom 23 (202) (75437, 72935, 44034) def
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bond_direction 22 23
atom 24 (201) (79575, 70115, 44902) def
bond1 23
bond_direction 23 24
atom 25 (202) (77195, 67362, 47206) def
bond1 24
bond_direction 24 25
atom 26 (201) (82201, 67518, 48081) def
bond1 25
bond_direction 25 26
atom 27 (202) (81918, 63883, 50367) def
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bond_direction 26 27
atom 28 (201) (85879, 66966, 51233) def
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bond_direction 27 28
atom 29 (202) (87839, 63851, 53460) def
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atom 30 (201) (89216, 68675, 54334) def
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bond_direction 29 30
atom 31 (202) (92676, 67330, 56491) def
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bond_direction 30 31
atom 32 (201) (90927, 72029, 57423) def
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bond_direction 31 32
atom 33 (202) (94544, 72983, 59514) def
bond1 32
bond_direction 32 33
atom 34 (201) (90367, 75692, 60566) def
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bond_direction 33 34
atom 35 (202) (92748, 78535, 62701) def
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bond_direction 34 35
atom 36 (201) (87805, 78193, 63900) def
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bond_direction 35 36
atom 37 (202) (88116, 81773, 66210) def
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bond_direction 36 37
atom 38 (201) (84339, 78514, 67410) def
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bond_direction 37 38
atom 39 (202) (82386, 79922, 68856) def
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bond_direction 38 39
atom 40 (201) (80703, 76165, 72201) def
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bond_direction 39 40
info chunk color = 0 0 153
mol (DnaStrandChunk1837) def
atom 41 (202) (12825, 78045, -5753) def
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bond_direction 42 43
atom 44 (201) (18596, 70048, -20492) def
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bond_direction 43 44
atom 45 (202) (20987, 67569, -17966) def
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atom 48 (201) (25015, 66478, -26358) def
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atom 49 (202) (27429, 63189, -27703) def
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bond_direction 48 49
atom 50 (201) (28266, 67751, -29674) def
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atom 51 (202) (30680, 65885, -32689) def
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atom 52 (201) (31416, 70785, -31690) def
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atom 53 (202) (33792, 71057, -35247) def
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atom 57 (202) (39909, 80956, -30321) def
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atom 59 (202) (43025, 82008, -24619) def
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atom 60 (201) (43870, 77533, -22387) def
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atom 80 (201) (76288, 76271, -21826) def
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bond_direction 80 1
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info chunk color = 0 0 153
DnaStrandMarker (DnaMarker-98) (127, 127, 127) 42 44
info leaf forwarded = 327403760
mol (DnaStrandChunk1843) def
atom 81 (202) (12350, 79242, 93067) def
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atom 84 (201) (10092, 69984, 67277) def
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atom 86 (201) (7270, 67613, 64099) def
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bond_direction 86 87
atom 88 (201) (3586, 67277, 60900) def
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atom 89 (202) (1503, 64272, 58618) def
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bond_direction 88 89
atom 90 (201) (433, 69154, 57660) def
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bond_direction 89 90
atom 91 (202) (-3004, 67938, 55358) def
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bond_direction 90 91
atom 92 (201) (-992, 72515, 54419) def
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bond_direction 94 95
atom 96 (201) (2665, 78454, 48009) def
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bond_direction 95 96
atom 97 (202) (2624, 82078, 45697) def
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atom 100 (201) (9433, 76764, 41626) def
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bond_direction 99 100
atom 101 (202) (12860, 77921, 39307) def
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atom 103 (202) (14247, 72298, 36116) def
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bond_direction 119 120
info chunk color = 0 0 153
mol (DnaStrandChunk1857) def
atom 121 (202) (77145, 79919, 83724) def
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atom 140 (201) (44983, 79164, 97605) def
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atom 143 (202) (39498, 75658, 91981) def
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atom 144 (201) (38616, 72400, 95788) def
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atom 149 (202) (30037, 65295, 103339) def
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atom 150 (201) (29146, 69956, 105208) def
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bond_direction 149 150
atom 151 (202) (26962, 68265, 108497) def
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atom 152 (201) (26018, 73111, 107226) def
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atom 154 (201) (22790, 76781, 106950) def
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atom 156 (201) (19431, 79443, 104539) def
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bond_direction 155 156
atom 157 (202) (17028, 82932, 105068) def
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bond_direction 156 157
atom 158 (201) (16071, 79999, 100938) def
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bond_direction 157 158
atom 159 (202) (13804, 82850, 99188) def
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bond_direction 158 159
atom 160 (201) (12874, 77910, 97468) def
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bond_direction 160 81
bond_direction 159 160
info chunk color = 0 0 153
egroup (blue)
group (red) DnaStrand
info opengroup open = True
forward_ref (327322800) # DnaStrandMarker (DnaMarker-99)
mol (DnaStrandChunk1838) def
atom 161 (201) (14639, 67238, -28322) def
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bond_direction 164 163
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bond_direction 165 164
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atom 191 (201) (63093, 78040, -23574) def
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bond_direction 191 190
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atom 195 (201) (69336, 71878, -19754) def
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info chunk color = 255 0 0
DnaStrandMarker (DnaMarker-99) (255, 0, 0) 161 163
info leaf forwarded = 327322800
mol (DnaStrandChunk1839) def
atom 201 (202) (77199, -27549, -28194) def
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info chunk color = 255 0 0
mol (DnaStrandChunk1841) def
atom 241 (202) (11317, -38089, -28703) def
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atom 246 (201) (20367, -44560, -18732) def
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bond_direction 245 246
atom 247 (202) (22647, -44888, -15101) def
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mol (DnaStrandChunk1851) def
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egroup (red)
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forward_ref (327385656) # DnaStrandMarker (DnaMarker-98)
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mol (DnaStrandChunk1853) def
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info chunk color = 170 85 0
egroup (brown)
group (green) DnaStrand
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forward_ref (327781072) # DnaStrandMarker (DnaMarker-99)
mol (DnaStrandChunk1836) def
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egroup (violet)
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forward_ref (327908368) # DnaSegmentMarker (DnaMarker-97)
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egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (323794624) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk901) def
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bond1 2 481
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DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 983 984
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egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (320317640) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk909) def
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bond1 282 361
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atom 1024 (208) (5946, -28196, -9724) def
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1024 1023
info leaf forwarded = 320317640
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (319117952) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk902) def
atom 1027 (208) (15481, 76207, -28163) def
bond1 42 161
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bond1 1027
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1027 1028
info leaf forwarded = 319117952
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (151142272) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk903) def
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bond1 1049
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DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1049 1050
info leaf forwarded = 151142272
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (320332744) # DnaSegmentMarker (DnaMarker-97)
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bond1 1071
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1071 1072
info leaf forwarded = 320332744
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (320331088) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk905) def
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bond1 321 82
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bond1 1112
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DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1112 1111
info leaf forwarded = 320331088
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (327935760) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk910) def
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DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1134 1133
info leaf forwarded = 327935760
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (328634576) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk911) def
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1156 1155
info leaf forwarded = 328634576
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (328645208) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk906) def
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bond1 562 801
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1159 1160
info leaf forwarded = 328645208
egroup (Segment 2)
group (Segment 2) DnaSegment
info opengroup open = False
forward_ref (328668184) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk907) def
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DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1181 1182
info leaf forwarded = 328668184
egroup (Segment 2)
group (Segment 2) DnaSegment
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forward_ref (328682912) # DnaSegmentMarker (DnaMarker-97)
mol (DnaAxisChunk912) def
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atom 1216 (208) (32156, 76299, 96644) def
bond1 1215 148 947
atom 1217 (208) (28951, 73113, 96535) def
bond1 1216 150 949
atom 1218 (208) (25808, 70455, 98387) def
bond1 1217 152 951
atom 1219 (208) (22766, 69381, 101442) def
bond1 1218 154 953
atom 1220 (208) (19748, 70233, 104513) def
bond1 1219 156 955
atom 1221 (208) (16592, 72635, 106413) def
bond1 1220 158 957
atom 1222 (208) (13430, 75368, 106106) def
bond1 1221 160 959
atom 1223 (0) (11472, 77060, 105916) def
bond1 1222
atom 1224 (0) (75345, 77483, 105584) def
bond1 1203
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker-97) (127, 127, 127) 1222 1221
info leaf forwarded = 328682912
egroup (Segment 2)
egroup (Ligated DNA Cube1)
egroup (nanocube_PAM3_not_equilibrium)
end1
group (Clipboard)
info opengroup open = False
egroup (Clipboard)
end molecular machine part nanocube_PAM3_not_equilibrium