mmpformat 080327 required; 080412 preferred kelvin 300 group (View Data) info opengroup open = True csys (HomeView) (1.000000, 0.000000, 0.000000, 0.000000) (10.000000) (0.000000, 0.000000, 0.000000) (1.000000) csys (LastView) (0.503644, -0.496660, 0.499106, 0.500564) (43.568132) (-45.943043, -21.871522, -41.013665) (1.000000) egroup (View Data) group (Holliday_PAM3_0_degrees) info opengroup open = True group (DnaGroup5) DnaGroup info opengroup open = False group (DnaSegment23) DnaSegment info opengroup open = False mol (DnaAxisChunk947) def atom 1 (300) (90451, 18272, 54867) def atom 2 (300) (87271, 18270, 54873) def bond1 1 atom 3 (300) (84091, 18269, 54878) def bond1 2 atom 4 (300) (80911, 18267, 54883) def bond1 3 atom 5 (300) (77731, 18264, 54888) def bond1 4 atom 6 (300) (74551, 18263, 54894) def bond1 5 atom 7 (300) (71371, 18261, 54900) def bond1 6 atom 8 (300) (68191, 18259, 54906) def bond1 7 atom 9 (300) (65011, 18258, 54910) def bond1 8 atom 10 (300) (61831, 18256, 54916) def bond1 9 atom 11 (300) (58651, 18254, 54921) def bond1 10 atom 12 (300) (55471, 18252, 54927) def bond1 11 atom 13 (300) (52291, 18250, 54932) def bond1 12 atom 14 (300) (49111, 18248, 54938) def bond1 13 atom 15 (300) (45931, 18247, 54943) def bond1 14 atom 16 (0) (92041, 18273, 54865) def bond1 1 info chunk color = 128 128 128 forward_ref (340109512) # DnaSegmentMarker (DnaMarker634) mol (DnaAxisChunk948) def atom 17 (300) (42751, 18245, 54948) def bond1 15 atom 18 (300) (39571, 18243, 54954) def bond1 17 atom 19 (300) (36391, 18241, 54959) def bond1 18 atom 20 (300) (33211, 18239, 54965) def bond1 19 atom 21 (300) (30031, 18237, 54971) def bond1 20 atom 22 (300) (26851, 18235, 54976) def bond1 21 atom 23 (300) (23672, 18234, 54981) def bond1 22 atom 24 (300) (20492, 18232, 54986) def bond1 23 atom 25 (300) (17312, 18230, 54992) def bond1 24 atom 26 (300) (14132, 18228, 54998) def bond1 25 atom 27 (300) (10952, 18226, 55003) def bond1 26 atom 28 (300) (7772, 18224, 55009) def bond1 27 atom 29 (300) (4592, 18223, 55014) def bond1 28 atom 30 (300) (1412, 18221, 55019) def bond1 29 atom 31 (300) (-1767, 18219, 55024) def bond1 30 atom 32 (0) (-3357, 18218, 55027) def bond1 31 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker634) (127, 127, 127) 31 30 info leaf forwarded = 340109512 egroup (DnaSegment23) group (DnaStrand48) DnaStrand info opengroup open = True mol (DnaStrandChunk1928) def atom 33 (301) (90436, 22268, 47143) def bond1 1 atom 34 (301) (87258, 16963, 46274) def bond1 2 33 bond_direction 34 33 atom 35 (301) (84084, 12157, 48690) def bond1 3 34 bond_direction 35 34 atom 36 (301) (80914, 9685, 53469) def bond1 4 35 bond_direction 36 35 atom 37 (301) (77743, 10491, 58788) def bond1 5 36 bond_direction 37 36 atom 38 (301) (74567, 14266, 62619) def bond1 6 37 bond_direction 38 37 atom 39 (301) (71386, 19568, 63498) def bond1 7 38 bond_direction 39 38 atom 40 (301) (68198, 24371, 61093) def bond1 8 39 bond_direction 40 39 atom 41 (301) (65009, 26838, 56325) def bond1 9 40 bond_direction 41 40 atom 42 (301) (61821, 26029, 51016) def bond1 10 41 bond_direction 42 41 atom 43 (301) (58636, 22250, 47197) def bond1 11 42 bond_direction 43 42 atom 44 (301) (55458, 16945, 46329) def bond1 12 43 bond_direction 44 43 atom 45 (301) (52284, 12139, 48744) def bond1 13 44 bond_direction 45 44 atom 46 (301) (49114, 9667, 53523) def bond1 14 45 bond_direction 46 45 atom 47 (301) (45943, 10473, 58843) def bond1 15 46 bond_direction 47 46 atom 48 (0) (92026, 24923, 47578) def bond1 33 bond_direction 33 48 info chunk color = 153 0 51 forward_ref (340070072) # DnaStrandMarker (DnaMarker635) mol (DnaStrandChunk1930) def atom 49 (301) (42767, 14248, 62673) def bond1 17 47 bond_direction 49 47 atom 50 (301) (39586, 19550, 63552) def bond1 18 49 bond_direction 50 49 atom 51 (301) (36398, 24352, 61148) def bond1 19 50 bond_direction 51 50 atom 52 (301) (33209, 26820, 56379) def bond1 20 51 bond_direction 52 51 atom 53 (301) (30021, 26011, 51071) def bond1 21 52 bond_direction 53 52 atom 54 (301) (26836, 22232, 47252) def bond1 22 53 bond_direction 54 53 atom 55 (301) (23659, 16927, 46383) def bond1 23 54 bond_direction 55 54 atom 56 (301) (20485, 12121, 48798) def bond1 24 55 bond_direction 56 55 atom 57 (301) (17315, 9648, 53578) def bond1 25 56 bond_direction 57 56 atom 58 (301) (14144, 10455, 58898) def bond1 26 57 bond_direction 58 57 atom 59 (301) (10968, 14229, 62727) def bond1 27 58 bond_direction 59 58 atom 60 (301) (7787, 19531, 63607) def bond1 28 59 bond_direction 60 59 atom 61 (301) (4599, 24334, 61202) def bond1 29 60 bond_direction 61 60 atom 62 (301) (1410, 26803, 56434) def bond1 30 61 bond_direction 62 61 atom 63 (301) (-1777, 25992, 51125) def bond1 31 62 bond_direction 63 62 atom 64 (0) (-3373, 25587, 48469) def bond1 63 bond_direction 64 63 info chunk color = 153 0 51 DnaStrandMarker (DnaMarker635) (127, 127, 127) 63 62 info leaf forwarded = 340070072 egroup (DnaStrand48) group (DnaStrand49) DnaStrand info opengroup open = True forward_ref (340040360) # DnaStrandMarker (DnaMarker636) mol (DnaStrandChunk1931) def atom 65 (301) (42739, 15320, 46758) def bond1 17 atom 66 (301) (39567, 11063, 50046) def bond1 18 65 bond_direction 65 66 atom 67 (301) (36397, 9547, 55209) def bond1 19 66 bond_direction 66 67 atom 68 (301) (33225, 11352, 60277) def bond1 20 67 bond_direction 67 68 atom 69 (301) (30047, 15788, 63316) def bond1 21 68 bond_direction 68 69 atom 70 (301) (26864, 21160, 63167) def bond1 22 69 bond_direction 69 70 atom 71 (301) (23677, 25414, 59889) def bond1 23 70 bond_direction 70 71 atom 72 (301) (20487, 26925, 54737) def bond1 24 71 bond_direction 71 72 atom 73 (301) (17300, 25116, 49680) def bond1 25 72 bond_direction 72 73 atom 74 (301) (14117, 20677, 46652) def bond1 26 73 bond_direction 73 74 atom 75 (301) (10941, 15302, 46812) def bond1 27 74 bond_direction 74 75 atom 76 (301) (7768, 11045, 50101) def bond1 28 75 bond_direction 75 76 atom 77 (301) (4598, 9529, 55264) def bond1 29 76 bond_direction 76 77 atom 78 (301) (1426, 11334, 60331) def bond1 30 77 bond_direction 77 78 atom 79 (301) (-1751, 15769, 63370) def bond1 31 78 bond_direction 78 79 atom 80 (0) (-3341, 17989, 64891) def bond1 79 bond_direction 79 80 info chunk color = 255 170 0 DnaStrandMarker (DnaMarker636) (255, 170, 0) 79 78 info leaf forwarded = 340040360 mol (DnaStrandChunk1927) def atom 81 (301) (42832, 16703, 39960) def bond1 65 bond_direction 81 65 atom 82 (301) (38369, 13515, 36973) def bond1 81 bond_direction 82 81 atom 83 (301) (36518, 10326, 31932) def bond1 82 bond_direction 83 82 atom 84 (301) (37987, 7137, 26767) def bond1 83 bond_direction 84 83 atom 85 (301) (42214, 3954, 23450) def bond1 84 bond_direction 85 84 atom 86 (301) (47587, 777, 23253) def bond1 85 bond_direction 86 85 atom 87 (301) (52054, -2393, 26251) def bond1 86 bond_direction 87 86 atom 88 (301) (53909, -5564, 31303) def bond1 87 bond_direction 88 87 atom 89 (301) (52444, -8735, 36479) def bond1 88 bond_direction 89 88 atom 90 (301) (48220, -11912, 39806) def bond1 89 bond_direction 90 89 atom 91 (301) (42850, -15095, 40014) def bond1 90 bond_direction 91 90 atom 92 (301) (38387, -18283, 37027) def bond1 91 bond_direction 92 91 atom 93 (301) (36535, -21472, 31987) def bond1 92 bond_direction 93 92 atom 94 (301) (38005, -24661, 26821) def bond1 93 bond_direction 94 93 atom 95 (301) (42233, -27844, 23505) def bond1 94 bond_direction 95 94 atom 96 (0) (44348, -29437, 21846) def bond1 95 bond_direction 96 95 info chunk color = 255 170 0 egroup (DnaStrand49) group (DnaSegment24) DnaSegment info opengroup open = False mol (DnaAxisChunk949) def atom 97 (300) (45203, 19870, 31588) def atom 98 (300) (45201, 23050, 31582) def bond1 97 atom 99 (300) (45199, 26230, 31577) def bond1 98 atom 100 (300) (45198, 29410, 31571) def bond1 99 atom 101 (300) (45196, 32590, 31566) def bond1 100 atom 102 (300) (45194, 35770, 31560) def bond1 101 atom 103 (300) (45192, 38950, 31555) def bond1 102 atom 104 (300) (45190, 42130, 31550) def bond1 103 atom 105 (300) (45188, 45310, 31544) def bond1 104 atom 106 (300) (45187, 48490, 31539) def bond1 105 atom 107 (300) (45185, 51670, 31533) def bond1 106 atom 108 (300) (45183, 54850, 31528) def bond1 107 atom 109 (300) (45181, 58030, 31522) def bond1 108 atom 110 (300) (45179, 61210, 31517) def bond1 109 atom 111 (300) (45177, 64390, 31512) def bond1 110 atom 112 (0) (45176, 65980, 31509) def bond1 111 info chunk color = 128 128 128 forward_ref (339996960) # DnaSegmentMarker (DnaMarker637) mol (DnaAxisChunk946) def atom 113 (300) (45205, 16690, 31593) def bond1 97 81 atom 114 (300) (45207, 13510, 31599) def bond1 82 113 atom 115 (300) (45209, 10330, 31604) def bond1 83 114 atom 116 (300) (45211, 7150, 31609) def bond1 84 115 atom 117 (300) (45212, 3970, 31615) def bond1 85 116 atom 118 (300) (45214, 790, 31620) def bond1 86 117 atom 119 (300) (45216, -2388, 31626) def bond1 87 118 atom 120 (300) (45218, -5568, 31631) def bond1 88 119 atom 121 (300) (45220, -8748, 31637) def bond1 89 120 atom 122 (300) (45222, -11928, 31642) def bond1 90 121 atom 123 (300) (45223, -15108, 31647) def bond1 91 122 atom 124 (300) (45225, -18288, 31653) def bond1 92 123 atom 125 (300) (45227, -21468, 31658) def bond1 93 124 atom 126 (300) (45229, -24648, 31664) def bond1 94 125 atom 127 (300) (45231, -27828, 31669) def bond1 95 126 atom 128 (0) (45232, -29418, 31672) def bond1 127 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker637) (127, 127, 127) 127 126 info leaf forwarded = 339996960 egroup (DnaSegment24) group (DnaStrand51) DnaStrand info opengroup open = True mol (DnaStrandChunk1932) def atom 129 (301) (49130, 19859, 23827) def bond1 97 atom 130 (301) (43817, 23035, 22996) def bond1 98 129 bond_direction 130 129 atom 131 (301) (39032, 26216, 25444) def bond1 99 130 bond_direction 131 130 atom 132 (301) (36604, 29403, 30235) def bond1 100 131 bond_direction 132 131 atom 133 (301) (37458, 32592, 35537) def bond1 101 132 bond_direction 133 132 atom 134 (301) (41267, 35781, 39321) def bond1 102 133 bond_direction 134 133 atom 135 (301) (46577, 38965, 40141) def bond1 103 134 bond_direction 135 134 atom 136 (301) (51357, 42144, 37682) def bond1 104 135 bond_direction 136 135 atom 137 (301) (53782, 45317, 32880) def bond1 105 136 bond_direction 137 136 atom 138 (301) (52925, 48488, 27569) def bond1 106 137 bond_direction 138 137 atom 139 (301) (49112, 51659, 23773) def bond1 107 138 bond_direction 139 138 atom 140 (301) (43798, 54835, 22942) def bond1 108 139 bond_direction 140 139 atom 141 (301) (39014, 58015, 25391) def bond1 109 140 bond_direction 141 140 atom 142 (301) (36585, 61203, 30181) def bond1 110 141 bond_direction 142 141 atom 143 (301) (37440, 64392, 35482) def bond1 111 142 bond_direction 143 142 atom 144 (0) (37867, 65989, 38134) def bond1 143 bond_direction 144 143 info chunk color = 0 0 153 forward_ref (339942056) # DnaStrandMarker (DnaMarker639) mol (DnaStrandChunk1926) def atom 145 (301) (52943, 16688, 27623) def bond1 113 129 bond_direction 129 145 atom 146 (301) (53800, 13517, 32935) def bond1 114 145 bond_direction 145 146 atom 147 (301) (51376, 10345, 37737) def bond1 115 146 bond_direction 146 147 atom 148 (301) (46595, 7165, 40196) def bond1 116 147 bond_direction 147 148 atom 149 (301) (41286, 3981, 39375) def bond1 117 148 bond_direction 148 149 atom 150 (301) (37476, 792, 35590) def bond1 118 149 bond_direction 149 150 atom 151 (301) (36622, -2395, 30290) def bond1 119 150 bond_direction 150 151 atom 152 (301) (39051, -5582, 25498) def bond1 120 151 bond_direction 151 152 atom 153 (301) (43834, -8763, 23051) def bond1 121 152 bond_direction 152 153 atom 154 (301) (49148, -11939, 23882) def bond1 122 153 bond_direction 153 154 atom 155 (301) (52961, -15110, 27678) def bond1 123 154 bond_direction 154 155 atom 156 (301) (53819, -18281, 32989) def bond1 124 155 bond_direction 155 156 atom 157 (301) (51394, -21453, 37790) def bond1 125 156 bond_direction 156 157 atom 158 (301) (46613, -24633, 40250) def bond1 126 157 bond_direction 157 158 atom 159 (301) (41304, -27816, 39430) def bond1 127 158 bond_direction 158 159 atom 160 (0) (38647, -29410, 39019) def bond1 159 bond_direction 159 160 info chunk color = 0 0 153 DnaStrandMarker (DnaMarker639) (127, 127, 127) 159 158 info leaf forwarded = 339942056 egroup (DnaStrand51) group (DnaStrand64) DnaStrand info opengroup open = True forward_ref (542287832) # DnaStrandMarker (DnaMarker660) mol (DnaStrandChunk1933) def atom 161 (301) (48201, 19886, 39751) def bond1 97 atom 162 (301) (52425, 23063, 36425) def bond1 98 161 bond_direction 161 162 atom 163 (301) (53890, 26234, 31248) def bond1 99 162 bond_direction 162 163 atom 164 (301) (52035, 29405, 26197) def bond1 100 163 bond_direction 163 164 atom 165 (301) (47569, 32577, 23199) def bond1 101 164 bond_direction 164 165 atom 166 (301) (42196, 35754, 23397) def bond1 102 165 bond_direction 165 166 atom 167 (301) (37968, 38937, 26712) def bond1 103 166 bond_direction 166 167 atom 168 (301) (36500, 42126, 31879) def bond1 104 167 bond_direction 167 168 atom 169 (301) (38351, 45315, 36919) def bond1 105 168 bond_direction 168 169 atom 170 (301) (42814, 48503, 39906) def bond1 106 169 bond_direction 169 170 atom 171 (301) (48183, 51686, 39698) def bond1 107 170 bond_direction 170 171 atom 172 (301) (52407, 54863, 36371) def bond1 108 171 bond_direction 171 172 atom 173 (301) (53872, 58034, 31194) def bond1 109 172 bond_direction 172 173 atom 174 (301) (52017, 61205, 26143) def bond1 110 173 bond_direction 173 174 atom 175 (301) (47550, 64377, 23144) def bond1 111 174 bond_direction 174 175 atom 176 (0) (45315, 65964, 21644) def bond1 175 bond_direction 175 176 info chunk color = 0 255 0 mol (DnaStrandChunk1929) def atom 177 (301) (90464, 21196, 63058) def bond1 1 atom 178 (301) (87275, 25450, 59781) def bond1 2 177 bond_direction 177 178 atom 179 (301) (84085, 26962, 54628) def bond1 3 178 bond_direction 178 179 atom 180 (301) (80899, 25153, 49572) def bond1 4 179 bond_direction 179 180 atom 181 (301) (77716, 20714, 46544) def bond1 5 180 bond_direction 180 181 atom 182 (301) (74539, 15339, 46704) def bond1 6 181 bond_direction 181 182 atom 183 (301) (71367, 11081, 49992) def bond1 7 182 bond_direction 182 183 atom 184 (301) (68197, 9566, 55155) def bond1 8 183 bond_direction 183 184 atom 185 (301) (65024, 11371, 60222) def bond1 9 184 bond_direction 184 185 atom 186 (301) (61847, 15806, 63261) def bond1 10 185 bond_direction 185 186 atom 187 (301) (58664, 21177, 63112) def bond1 11 186 bond_direction 186 187 atom 188 (301) (55476, 25432, 59835) def bond1 12 187 bond_direction 187 188 atom 189 (301) (52285, 26944, 54683) def bond1 13 188 bond_direction 188 189 atom 190 (301) (49099, 25134, 49626) def bond1 14 189 bond_direction 189 190 atom 191 (301) (45916, 20695, 46598) def bond1 15 190 161 bond_direction 190 191 bond_direction 191 161 atom 192 (0) (92060, 19068, 64697) def bond1 177 bond_direction 192 177 info chunk color = 0 255 0 DnaStrandMarker (DnaMarker660) (127, 127, 127) 177 178 info leaf forwarded = 542287832 egroup (DnaStrand64) egroup (DnaGroup5) egroup (Holliday_PAM3_0_degrees) end1 group (Clipboard) info opengroup open = False egroup (Clipboard) end molecular machine part Holliday_PAM3_0_degrees