mmpformat 080327 required; 080412 preferred kelvin 300 group (View Data) info opengroup open = True csys (HomeView) (1.000000, 0.000000, 0.000000, 0.000000) (10.000000) (0.000000, 0.000000, 0.000000) (1.000000) csys (LastView) (1.000000, 0.000000, 0.000000, 0.000000) (82.436064) (-20.608337, -9.986425, -0.000000) (1.000000) egroup (View Data) group (60bp_PAM3_3way_junction) info opengroup open = True group (DnaGroup1) DnaGroup info opengroup open = True group (DnaSegment1) DnaSegment info opengroup open = False forward_ref (95386280) # DnaSegmentMarker (DnaMarker1) mol (DnaAxisChunk1) def atom 1 (300) (-56286, 5473, 0) def atom 2 (300) (-53106, 5473, 0) def bond1 1 atom 3 (300) (-49926, 5473, 0) def bond1 2 atom 4 (300) (-46746, 5473, 0) def bond1 3 atom 5 (300) (-43566, 5473, 0) def bond1 4 atom 6 (300) (-40386, 5473, 0) def bond1 5 atom 7 (300) (-37206, 5473, 0) def bond1 6 atom 8 (300) (-34026, 5473, 0) def bond1 7 atom 9 (300) (-30846, 5473, 0) def bond1 8 atom 10 (300) (-27666, 5473, 0) def bond1 9 atom 11 (300) (-24486, 5473, 0) def bond1 10 atom 12 (300) (-21306, 5473, 0) def bond1 11 atom 13 (300) (-18126, 5473, 0) def bond1 12 atom 14 (300) (-14946, 5473, 0) def bond1 13 atom 15 (300) (-11766, 5473, 0) def bond1 14 atom 16 (300) (-8586, 5473, 0) def bond1 15 atom 17 (300) (-5406, 5473, 0) def bond1 16 atom 18 (300) (-2226, 5473, 0) def bond1 17 atom 19 (300) (953, 5473, 0) def bond1 18 atom 20 (300) (4133, 5473, 0) def bond1 19 atom 21 (0) (-57876, 5473, 0) def bond1 1 atom 22 (0) (5723, 5473, 0) def bond1 20 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker1) (127, 127, 127) 1 2 info leaf forwarded = 95386280 egroup (DnaSegment1) group (DnaStrand1) DnaStrand info opengroup open = True mol (DnaStrandChunk7) def atom 23 (301) (7167, 17710, 0) def atom 24 (301) (8828, 20890, 5112) def bond1 23 bond_direction 23 24 atom 25 (301) (13176, 24070, 8271) def bond1 24 bond_direction 24 25 atom 26 (301) (18551, 27250, 8271) def bond1 25 bond_direction 25 26 atom 27 (301) (22900, 30430, 5112) def bond1 26 bond_direction 26 27 atom 28 (301) (24561, 33610, 0) def bond1 27 bond_direction 27 28 atom 29 (301) (22900, 36790, -5111) def bond1 28 bond_direction 28 29 atom 30 (301) (18551, 39970, -8270) def bond1 29 bond_direction 29 30 atom 31 (301) (13176, 43150, -8270) def bond1 30 bond_direction 30 31 atom 32 (301) (8828, 46330, -5111) def bond1 31 bond_direction 31 32 atom 33 (301) (7167, 49510, 0) def bond1 32 bond_direction 32 33 atom 34 (301) (8828, 52690, 5112) def bond1 33 bond_direction 33 34 atom 35 (301) (13176, 55870, 8271) def bond1 34 bond_direction 34 35 atom 36 (301) (18551, 59050, 8271) def bond1 35 bond_direction 35 36 atom 37 (301) (22900, 62230, 5112) def bond1 36 bond_direction 36 37 atom 38 (301) (24561, 65410, 0) def bond1 37 bond_direction 37 38 atom 39 (301) (22900, 68590, -5111) def bond1 38 bond_direction 38 39 atom 40 (301) (18551, 71770, -8270) def bond1 39 bond_direction 39 40 atom 41 (301) (13176, 74950, -8270) def bond1 40 bond_direction 40 41 atom 42 (301) (8828, 78130, -5111) def bond1 41 bond_direction 41 42 atom 43 (0) (6652, 79722, -3530) def bond1 42 bond_direction 42 43 info chunk color = 153 0 51 forward_ref (95419368) # DnaStrandMarker (DnaMarker2) mol (DnaStrandChunk1) def atom 44 (301) (-56286, 14170, 0) def bond1 1 atom 45 (301) (-53106, 12509, 5112) def bond1 2 44 bond_direction 44 45 atom 46 (301) (-49926, 8161, 8271) def bond1 3 45 bond_direction 45 46 atom 47 (301) (-46746, 2786, 8271) def bond1 4 46 bond_direction 46 47 atom 48 (301) (-43566, -1562, 5112) def bond1 5 47 bond_direction 47 48 atom 49 (301) (-40386, -3223, 0) def bond1 6 48 bond_direction 48 49 atom 50 (301) (-37206, -1562, -5111) def bond1 7 49 bond_direction 49 50 atom 51 (301) (-34026, 2786, -8270) def bond1 8 50 bond_direction 50 51 atom 52 (301) (-30846, 8161, -8270) def bond1 9 51 bond_direction 51 52 atom 53 (301) (-27666, 12509, -5111) def bond1 10 52 bond_direction 52 53 atom 54 (301) (-24486, 14170, 0) def bond1 11 53 bond_direction 53 54 atom 55 (301) (-21306, 12509, 5112) def bond1 12 54 bond_direction 54 55 atom 56 (301) (-18126, 8161, 8271) def bond1 13 55 bond_direction 55 56 atom 57 (301) (-14946, 2786, 8271) def bond1 14 56 bond_direction 56 57 atom 58 (301) (-11766, -1562, 5112) def bond1 15 57 bond_direction 57 58 atom 59 (301) (-8586, -3223, 0) def bond1 16 58 bond_direction 58 59 atom 60 (301) (-5406, -1562, -5111) def bond1 17 59 bond_direction 59 60 atom 61 (301) (-2226, 2786, -8270) def bond1 18 60 bond_direction 60 61 atom 62 (301) (953, 8161, -8270) def bond1 19 61 bond_direction 61 62 atom 63 (301) (4133, 12509, -5111) def bond1 20 62 23 bond_direction 62 63 bond_direction 63 23 atom 64 (0) (-57877, 15001, -2557) def bond1 44 bond_direction 64 44 info chunk color = 153 0 51 DnaStrandMarker (DnaMarker2) (127, 127, 127) 44 45 info leaf forwarded = 95419368 egroup (DnaStrand1) group (DnaStrand2) DnaStrand info opengroup open = True forward_ref (95419968) # DnaStrandMarker (DnaMarker3) mol (DnaStrandChunk2) def atom 65 (301) (-56286, -457, 6361) def bond1 1 atom 66 (301) (-53106, -3063, 1660) def bond1 2 65 bond_direction 66 65 atom 67 (301) (-49926, -2408, -3674) def bond1 3 66 bond_direction 67 66 atom 68 (301) (-46746, 1256, -7605) def bond1 4 67 bond_direction 68 67 atom 69 (301) (-43566, 6533, -8631) def bond1 5 68 bond_direction 69 68 atom 70 (301) (-40386, 11404, -6360) def bond1 6 69 bond_direction 70 69 atom 71 (301) (-37206, 14011, -1659) def bond1 7 70 bond_direction 71 70 atom 72 (301) (-34026, 13356, 3675) def bond1 8 71 bond_direction 72 71 atom 73 (301) (-30846, 9690, 7606) def bond1 9 72 bond_direction 73 72 atom 74 (301) (-27666, 4414, 8632) def bond1 10 73 bond_direction 74 73 atom 75 (301) (-24486, -457, 6361) def bond1 11 74 bond_direction 75 74 atom 76 (301) (-21306, -3063, 1660) def bond1 12 75 bond_direction 76 75 atom 77 (301) (-18126, -2408, -3674) def bond1 13 76 bond_direction 77 76 atom 78 (301) (-14946, 1256, -7605) def bond1 14 77 bond_direction 78 77 atom 79 (301) (-11766, 6533, -8631) def bond1 15 78 bond_direction 79 78 atom 80 (301) (-8586, 11404, -6360) def bond1 16 79 bond_direction 80 79 atom 81 (301) (-5406, 14011, -1659) def bond1 17 80 bond_direction 81 80 atom 82 (301) (-2226, 13356, 3675) def bond1 18 81 bond_direction 82 81 atom 83 (301) (953, 9690, 7606) def bond1 19 82 bond_direction 83 82 atom 84 (301) (4133, 4414, 8632) def bond1 20 83 bond_direction 84 83 atom 85 (0) (-57877, 846, 8713) def bond1 65 bond_direction 65 85 info chunk color = 0 255 127 DnaStrandMarker (DnaMarker3) (0, 255, 127) 65 66 info leaf forwarded = 95419968 mol (DnaStrandChunk12) def atom 86 (301) (13259, -62791, 8632) def atom 87 (301) (18536, -59611, 7606) def bond1 86 bond_direction 86 87 atom 88 (301) (22201, -56431, 3675) def bond1 87 bond_direction 87 88 atom 89 (301) (22856, -53251, -1659) def bond1 88 bond_direction 88 89 atom 90 (301) (20250, -50071, -6360) def bond1 89 bond_direction 89 90 atom 91 (301) (15378, -46891, -8631) def bond1 90 bond_direction 90 91 atom 92 (301) (10102, -43711, -7605) def bond1 91 bond_direction 91 92 atom 93 (301) (6436, -40531, -3674) def bond1 92 bond_direction 92 93 atom 94 (301) (5782, -37351, 1660) def bond1 93 bond_direction 93 94 atom 95 (301) (8388, -34171, 6361) def bond1 94 bond_direction 94 95 atom 96 (301) (13259, -30991, 8632) def bond1 95 bond_direction 95 96 atom 97 (301) (18536, -27811, 7606) def bond1 96 bond_direction 96 97 atom 98 (301) (22201, -24631, 3675) def bond1 97 bond_direction 97 98 atom 99 (301) (22856, -21451, -1659) def bond1 98 bond_direction 98 99 atom 100 (301) (20250, -18271, -6360) def bond1 99 bond_direction 99 100 atom 101 (301) (15378, -15091, -8631) def bond1 100 bond_direction 100 101 atom 102 (301) (10102, -11911, -7605) def bond1 101 bond_direction 101 102 atom 103 (301) (6436, -8731, -3674) def bond1 102 bond_direction 102 103 atom 104 (301) (5782, -5551, 1660) def bond1 103 bond_direction 103 104 atom 105 (301) (8388, -2371, 6361) def bond1 104 84 bond_direction 104 105 bond_direction 105 84 atom 106 (0) (10619, -64382, 9146) def bond1 86 bond_direction 106 86 info chunk color = 0 255 127 egroup (DnaStrand2) group (DnaSegment4) DnaSegment info opengroup open = False forward_ref (97916008) # DnaSegmentMarker (DnaMarker10) mol (DnaAxisChunk4) def atom 107 (300) (15864, 17710, 0) def bond1 23 atom 108 (300) (15864, 20890, 0) def bond1 24 107 atom 109 (300) (15864, 24070, 0) def bond1 25 108 atom 110 (300) (15864, 27250, 0) def bond1 26 109 atom 111 (300) (15864, 30430, 0) def bond1 27 110 atom 112 (300) (15864, 33610, 0) def bond1 28 111 atom 113 (300) (15864, 36790, 0) def bond1 29 112 atom 114 (300) (15864, 39970, 0) def bond1 30 113 atom 115 (300) (15864, 43150, 0) def bond1 31 114 atom 116 (300) (15864, 46330, 0) def bond1 32 115 atom 117 (300) (15864, 49510, 0) def bond1 33 116 atom 118 (300) (15864, 52690, 0) def bond1 34 117 atom 119 (300) (15864, 55870, 0) def bond1 35 118 atom 120 (300) (15864, 59050, 0) def bond1 36 119 atom 121 (300) (15864, 62230, 0) def bond1 37 120 atom 122 (300) (15864, 65410, 0) def bond1 38 121 atom 123 (300) (15864, 68590, 0) def bond1 39 122 atom 124 (300) (15864, 71770, 0) def bond1 40 123 atom 125 (300) (15864, 74950, 0) def bond1 41 124 atom 126 (300) (15864, 78130, 0) def bond1 42 125 atom 127 (0) (15864, 16120, 0) def bond1 107 atom 128 (0) (15864, 79720, 0) def bond1 126 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker10) (127, 127, 127) 107 108 info leaf forwarded = 97916008 egroup (DnaSegment4) group (DnaStrand8) DnaStrand info opengroup open = True mol (DnaStrandChunk8) def atom 129 (301) (21795, 17710, 6361) def bond1 107 atom 130 (301) (24401, 20890, 1660) def bond1 108 129 bond_direction 130 129 atom 131 (301) (23746, 24070, -3674) def bond1 109 130 bond_direction 131 130 atom 132 (301) (20081, 27250, -7605) def bond1 110 131 bond_direction 132 131 atom 133 (301) (14804, 30430, -8631) def bond1 111 132 bond_direction 133 132 atom 134 (301) (9933, 33610, -6360) def bond1 112 133 bond_direction 134 133 atom 135 (301) (7327, 36790, -1659) def bond1 113 134 bond_direction 135 134 atom 136 (301) (7981, 39970, 3675) def bond1 114 135 bond_direction 136 135 atom 137 (301) (11647, 43150, 7606) def bond1 115 136 bond_direction 137 136 atom 138 (301) (16923, 46330, 8632) def bond1 116 137 bond_direction 138 137 atom 139 (301) (21795, 49510, 6361) def bond1 117 138 bond_direction 139 138 atom 140 (301) (24401, 52690, 1660) def bond1 118 139 bond_direction 140 139 atom 141 (301) (23746, 55870, -3674) def bond1 119 140 bond_direction 141 140 atom 142 (301) (20081, 59050, -7605) def bond1 120 141 bond_direction 142 141 atom 143 (301) (14804, 62230, -8631) def bond1 121 142 bond_direction 143 142 atom 144 (301) (9933, 65410, -6360) def bond1 122 143 bond_direction 144 143 atom 145 (301) (7327, 68590, -1659) def bond1 123 144 bond_direction 145 144 atom 146 (301) (7981, 71770, 3675) def bond1 124 145 bond_direction 146 145 atom 147 (301) (11647, 74950, 7606) def bond1 125 146 bond_direction 147 146 atom 148 (301) (16923, 78130, 8632) def bond1 126 147 bond_direction 148 147 atom 149 (0) (19563, 79722, 9146) def bond1 148 bond_direction 149 148 info chunk color = 255 170 0 DnaStrandMarker (DnaMarker12) (255, 170, 0) 129 130 mol (DnaStrandChunk9) def atom 150 (301) (85552, 12829, -5111) def atom 151 (301) (82372, 8481, -8270) def bond1 150 bond_direction 151 150 atom 152 (301) (79192, 3106, -8270) def bond1 151 bond_direction 152 151 atom 153 (301) (76012, -1242, -5111) def bond1 152 bond_direction 153 152 atom 154 (301) (72832, -2903, 0) def bond1 153 bond_direction 154 153 atom 155 (301) (69652, -1242, 5112) def bond1 154 bond_direction 155 154 atom 156 (301) (66472, 3106, 8271) def bond1 155 bond_direction 156 155 atom 157 (301) (63292, 8481, 8271) def bond1 156 bond_direction 157 156 atom 158 (301) (60112, 12829, 5112) def bond1 157 bond_direction 158 157 atom 159 (301) (56932, 14490, 0) def bond1 158 bond_direction 159 158 atom 160 (301) (53752, 12829, -5111) def bond1 159 bond_direction 160 159 atom 161 (301) (50572, 8481, -8270) def bond1 160 bond_direction 161 160 atom 162 (301) (47392, 3106, -8270) def bond1 161 bond_direction 162 161 atom 163 (301) (44212, -1242, -5111) def bond1 162 bond_direction 163 162 atom 164 (301) (41032, -2903, 0) def bond1 163 bond_direction 164 163 atom 165 (301) (37852, -1242, 5112) def bond1 164 bond_direction 165 164 atom 166 (301) (34672, 3106, 8271) def bond1 165 bond_direction 166 165 atom 167 (301) (31492, 8481, 8271) def bond1 166 bond_direction 167 166 atom 168 (301) (28312, 12829, 5112) def bond1 167 bond_direction 168 167 atom 169 (301) (25132, 14490, 0) def bond1 168 129 bond_direction 169 168 bond_direction 129 169 atom 170 (0) (87144, 15005, -3530) def bond1 150 bond_direction 150 170 info chunk color = 255 170 0 egroup (DnaStrand8) group (DnaSegment5) DnaSegment info opengroup open = False forward_ref (98014392) # DnaSegmentMarker (DnaMarker13) mol (DnaAxisChunk5) def atom 171 (300) (85552, 5793, 0) def bond1 150 atom 172 (300) (82372, 5793, 0) def bond1 151 171 atom 173 (300) (79192, 5793, 0) def bond1 152 172 atom 174 (300) (76012, 5793, 0) def bond1 153 173 atom 175 (300) (72832, 5793, 0) def bond1 154 174 atom 176 (300) (69652, 5793, 0) def bond1 155 175 atom 177 (300) (66472, 5793, 0) def bond1 156 176 atom 178 (300) (63292, 5793, 0) def bond1 157 177 atom 179 (300) (60112, 5793, 0) def bond1 158 178 atom 180 (300) (56932, 5793, 0) def bond1 159 179 atom 181 (300) (53752, 5793, 0) def bond1 160 180 atom 182 (300) (50572, 5793, 0) def bond1 161 181 atom 183 (300) (47392, 5793, 0) def bond1 162 182 atom 184 (300) (44212, 5793, 0) def bond1 163 183 atom 185 (300) (41032, 5793, 0) def bond1 164 184 atom 186 (300) (37852, 5793, 0) def bond1 165 185 atom 187 (300) (34672, 5793, 0) def bond1 166 186 atom 188 (300) (31492, 5793, 0) def bond1 167 187 atom 189 (300) (28312, 5793, 0) def bond1 168 188 atom 190 (300) (25132, 5793, 0) def bond1 169 189 atom 191 (0) (23542, 5793, 0) def bond1 190 atom 192 (0) (87142, 5793, 0) def bond1 171 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker13) (127, 127, 127) 190 189 info leaf forwarded = 98014392 egroup (DnaSegment5) group (DnaStrand10) DnaStrand info opengroup open = True mol (DnaStrandChunk10) def atom 193 (301) (85552, 4734, 8632) def bond1 171 atom 194 (301) (82372, 10010, 7606) def bond1 172 193 bond_direction 193 194 atom 195 (301) (79192, 13676, 3675) def bond1 173 194 bond_direction 194 195 atom 196 (301) (76012, 14331, -1659) def bond1 174 195 bond_direction 195 196 atom 197 (301) (72832, 11724, -6360) def bond1 175 196 bond_direction 196 197 atom 198 (301) (69652, 6853, -8631) def bond1 176 197 bond_direction 197 198 atom 199 (301) (66472, 1577, -7605) def bond1 177 198 bond_direction 198 199 atom 200 (301) (63292, -2088, -3674) def bond1 178 199 bond_direction 199 200 atom 201 (301) (60112, -2743, 1660) def bond1 179 200 bond_direction 200 201 atom 202 (301) (56932, -137, 6361) def bond1 180 201 bond_direction 201 202 atom 203 (301) (53752, 4734, 8632) def bond1 181 202 bond_direction 202 203 atom 204 (301) (50572, 10010, 7606) def bond1 182 203 bond_direction 203 204 atom 205 (301) (47392, 13676, 3675) def bond1 183 204 bond_direction 204 205 atom 206 (301) (44212, 14331, -1659) def bond1 184 205 bond_direction 205 206 atom 207 (301) (41032, 11724, -6360) def bond1 185 206 bond_direction 206 207 atom 208 (301) (37852, 6853, -8631) def bond1 186 207 bond_direction 207 208 atom 209 (301) (34672, 1577, -7605) def bond1 187 208 bond_direction 208 209 atom 210 (301) (31492, -2088, -3674) def bond1 188 209 bond_direction 209 210 atom 211 (301) (28312, -2743, 1660) def bond1 189 210 bond_direction 210 211 atom 212 (301) (25132, -137, 6361) def bond1 190 211 bond_direction 211 212 atom 213 (0) (87144, 2094, 9146) def bond1 193 bond_direction 213 193 info chunk color = 0 0 153 DnaStrandMarker (DnaMarker15) (127, 127, 127) 212 211 mol (DnaStrandChunk11) def atom 214 (301) (21355, -62791, -5111) def atom 215 (301) (17006, -59611, -8270) def bond1 214 bond_direction 215 214 atom 216 (301) (11631, -56431, -8270) def bond1 215 bond_direction 216 215 atom 217 (301) (7283, -53251, -5111) def bond1 216 bond_direction 217 216 atom 218 (301) (5622, -50071, 0) def bond1 217 bond_direction 218 217 atom 219 (301) (7283, -46891, 5112) def bond1 218 bond_direction 219 218 atom 220 (301) (11631, -43711, 8271) def bond1 219 bond_direction 220 219 atom 221 (301) (17006, -40531, 8271) def bond1 220 bond_direction 221 220 atom 222 (301) (21355, -37351, 5112) def bond1 221 bond_direction 222 221 atom 223 (301) (23016, -34171, 0) def bond1 222 bond_direction 223 222 atom 224 (301) (21355, -30991, -5111) def bond1 223 bond_direction 224 223 atom 225 (301) (17006, -27811, -8270) def bond1 224 bond_direction 225 224 atom 226 (301) (11631, -24631, -8270) def bond1 225 bond_direction 226 225 atom 227 (301) (7283, -21451, -5111) def bond1 226 bond_direction 227 226 atom 228 (301) (5622, -18271, 0) def bond1 227 bond_direction 228 227 atom 229 (301) (7283, -15091, 5112) def bond1 228 bond_direction 229 228 atom 230 (301) (11631, -11911, 8271) def bond1 229 bond_direction 230 229 atom 231 (301) (17006, -8731, 8271) def bond1 230 bond_direction 231 230 atom 232 (301) (21355, -5551, 5112) def bond1 231 bond_direction 232 231 atom 233 (301) (23016, -2371, 0) def bond1 232 212 bond_direction 233 232 bond_direction 212 233 atom 234 (0) (23531, -64382, -3530) def bond1 214 bond_direction 214 234 info chunk color = 0 0 153 egroup (DnaStrand10) group (DnaSegment6) DnaSegment info opengroup open = False forward_ref (99102672) # DnaSegmentMarker (DnaMarker16) mol (DnaAxisChunk6) def atom 235 (300) (14319, -62791, 0) def bond1 214 86 atom 236 (300) (14319, -59611, 0) def bond1 215 87 235 atom 237 (300) (14319, -56431, 0) def bond1 216 88 236 atom 238 (300) (14319, -53251, 0) def bond1 217 89 237 atom 239 (300) (14319, -50071, 0) def bond1 218 90 238 atom 240 (300) (14319, -46891, 0) def bond1 219 91 239 atom 241 (300) (14319, -43711, 0) def bond1 220 92 240 atom 242 (300) (14319, -40531, 0) def bond1 221 93 241 atom 243 (300) (14319, -37351, 0) def bond1 222 94 242 atom 244 (300) (14319, -34171, 0) def bond1 223 95 243 atom 245 (300) (14319, -30991, 0) def bond1 224 96 244 atom 246 (300) (14319, -27811, 0) def bond1 225 97 245 atom 247 (300) (14319, -24631, 0) def bond1 226 98 246 atom 248 (300) (14319, -21451, 0) def bond1 227 99 247 atom 249 (300) (14319, -18271, 0) def bond1 228 100 248 atom 250 (300) (14319, -15091, 0) def bond1 229 101 249 atom 251 (300) (14319, -11911, 0) def bond1 230 102 250 atom 252 (300) (14319, -8731, 0) def bond1 231 103 251 atom 253 (300) (14319, -5551, 0) def bond1 232 104 252 atom 254 (300) (14319, -2371, 0) def bond1 233 105 253 atom 255 (0) (14319, -64381, 0) def bond1 235 atom 256 (0) (14319, -781, 0) def bond1 254 info chunk color = 128 128 128 DnaSegmentMarker (DnaMarker16) (127, 127, 127) 254 253 info leaf forwarded = 99102672 egroup (DnaSegment6) egroup (DnaGroup1) egroup (60bp_PAM3_3way_junction) end1 group (Clipboard) info opengroup open = False egroup (Clipboard) end molecular machine part 60bp_PAM3_3way_junction