mmpformat 080327 required; 080412 preferred
kelvin 300
group (View Data)
info opengroup open = True
csys (HomeView) (1.000000, 0.000000, 0.000000, 0.000000) (10.000000) (0.000000, 0.000000, 0.000000) (1.000000)
csys (LastView) (1.000000, 0.000000, 0.000000, 0.000000) (111.277047) (-20.608337, -9.986425, 0.000000) (1.000000)
egroup (View Data)
group (60bp_PAM3_3way_junction_poor)
info opengroup open = True
group (DnaGroup1) DnaGroup
info opengroup open = True
group (DnaSegment1) DnaSegment
info opengroup open = False
forward_ref (96570384) # DnaSegmentMarker (DnaMarker1)
mol (DnaAxisChunk5) def
atom 1 (208) (-83780, 3481, -4581) def
atom 2 (208) (-80600, 6555, -4877) def
bond1 1
atom 3 (208) (-77420, 9216, -3310) def
bond1 2
atom 4 (208) (-74240, 10447, -478) def
bond1 3
atom 5 (208) (-55627, 14037, 2537) def
bond1 4
atom 6 (208) (-52447, 11723, 4583) def
bond1 5
atom 7 (208) (-49267, 8650, 4879) def
bond1 6
atom 8 (208) (-46087, 5989, 3312) def
bond1 7
atom 9 (208) (-33861, -8014, 479) def
bond1 8
atom 10 (208) (-30681, -7346, -2535) def
bond1 9
atom 11 (208) (-27501, -5033, -4581) def
bond1 10
atom 12 (208) (-24321, -1959, -4877) def
bond1 11
atom 13 (208) (-21141, 18440, -3310) def
bond1 12
atom 14 (208) (-17961, 19671, -478) def
bond1 13
atom 15 (208) (-14781, 19003, 2537) def
bond1 14
atom 16 (208) (-11601, 16690, 4583) def
bond1 15
atom 17 (208) (-2567, -1992, 4879) def
bond1 16
atom 18 (208) (612, -4653, 3312) def
bond1 17
atom 19 (208) (3791, -5885, 479) def
bond1 18
atom 20 (208) (6971, -5217, -2535) def
bond1 19
atom 21 (0) (-85641, 1681, -4408) def
bond1 1
atom 22 (0) (8833, -4826, -4300) def
bond1 20
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker1) (127, 127, 127) 1 2
info leaf forwarded = 96570384
egroup (DnaSegment1)
group (DnaStrand1) DnaStrand
info opengroup open = True
forward_ref (97631488) # DnaStrandMarker (DnaMarker2)
mol (DnaStrandChunk7) def
atom 23 (202) (12178, 14284, -4176) def
atom 24 (201) (17695, 20404, 160) def
bond1 23
bond_direction 23 24
atom 25 (202) (16280, 24209, 1570) def
bond1 24
bond_direction 24 25
atom 26 (201) (20521, 22311, 3615) def
bond1 25
bond_direction 25 26
atom 27 (202) (20308, 25277, 6717) def
bond1 26
bond_direction 26 27
atom 28 (201) (24819, 23190, 5689) def
bond1 27
bond_direction 27 28
atom 29 (202) (26395, 24908, 9299) def
bond1 28
bond_direction 28 29
atom 30 (201) (29644, 23701, 5590) def
bond1 29
bond_direction 29 30
atom 31 (202) (32912, 24239, 8329) def
bond1 30
bond_direction 30 31
atom 32 (201) (33848, 24646, 3357) def
bond1 31
bond_direction 31 32
atom 33 (202) (38666, 24864, 4207) def
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bond_direction 32 33
atom 34 (201) (37296, 27409, 123) def
bond1 33
bond_direction 33 34
atom 35 (202) (41106, 26928, -1985) def
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bond_direction 34 35
atom 36 (201) (38114, 30891, -3962) def
bond1 35
bond_direction 35 36
atom 37 (202) (39093, 34303, -7269) def
bond1 36
bond_direction 36 37
atom 38 (201) (35084, 42512, -5687) def
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bond_direction 37 38
atom 39 (202) (36153, 44584, -9297) def
bond1 38
bond_direction 38 39
atom 40 (201) (33898, 47216, -5588) def
bond1 39
bond_direction 39 40
atom 41 (202) (33275, 50469, -8327) def
bond1 40
bond_direction 40 41
atom 42 (201) (33333, 51488, -3355) def
bond1 41
bond_direction 41 42
atom 43 (202) (32596, 56650, -3936) def
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bond_direction 42 43
atom 44 (201) (34256, 54622, 89) def
bond1 43
bond_direction 43 44
atom 45 (202) (34221, 59245, 2795) def
bond1 44
bond_direction 44 45
atom 46 (201) (37489, 56566, 4315) def
bond1 45
bond_direction 45 46
atom 47 (202) (39653, 58137, 7331) def
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bond_direction 46 47
atom 48 (201) (48569, 56946, 5689) def
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bond_direction 47 48
atom 49 (202) (50145, 58665, 9299) def
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bond_direction 48 49
atom 50 (201) (53394, 57458, 5590) def
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bond_direction 49 50
atom 51 (202) (56663, 57996, 8329) def
bond1 50
bond_direction 50 51
atom 52 (201) (57598, 58402, 3357) def
bond1 51
bond_direction 51 52
atom 53 (202) (60194, 57795, 2065) def
bond1 52
bond_direction 52 53
atom 54 (201) (61544, 61398, -340) def
bond1 53
bond_direction 53 54
atom 55 (202) (65399, 60096, -604) def
bond1 54
bond_direction 54 55
atom 56 (201) (63808, 64987, -4575) def
bond1 55
bond_direction 55 56
atom 57 (202) (68747, 77132, -7303) def
bond1 56
bond_direction 56 57
atom 58 (201) (71801, 95057, -5687) def
bond1 57
bond_direction 57 58
atom 59 (202) (72870, 97129, -9297) def
bond1 58
bond_direction 58 59
atom 60 (201) (70615, 99761, -5588) def
bond1 59
bond_direction 59 60
atom 61 (202) (69991, 103014, -8327) def
bond1 60
bond_direction 60 61
atom 62 (201) (70049, 104033, -3355) def
bond1 61
bond_direction 61 62
atom 63 (0) (70715, 108477, -2335) def
bond1 62
bond_direction 62 63
info chunk color = 153 0 51
mol (DnaStrandChunk9) def
atom 64 (202) (-84662, 13999, -4103) def
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bond1 1 64
bond_direction 64 65
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bond_direction 65 66
atom 67 (201) (-80600, 10177, 3615) def
bond1 2 66
bond_direction 66 67
atom 68 (202) (-78289, 12048, 6717) def
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bond_direction 67 68
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bond_direction 68 69
atom 70 (202) (-75109, 6845, 9299) def
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bond_direction 69 70
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bond_direction 70 71
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bond_direction 71 72
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bond_direction 72 73
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bond1 73
bond_direction 73 74
atom 75 (201) (-52447, 3801, -159) def
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bond_direction 74 75
atom 76 (202) (-50136, 463, -1568) def
bond1 75
bond_direction 75 76
atom 77 (201) (-49267, 5028, -3613) def
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bond_direction 76 77
atom 78 (202) (-46956, 3156, -6715) def
bond1 77
bond_direction 77 78
atom 79 (201) (-46087, 8050, -5687) def
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bond_direction 78 79
atom 80 (202) (-39253, 1974, -9297) def
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bond_direction 79 80
atom 81 (201) (-33861, -1056, -5588) def
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bond_direction 80 81
atom 82 (202) (-31550, 1316, -8327) def
bond1 81
bond_direction 81 82
atom 83 (201) (-30681, 1850, -3355) def
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bond_direction 82 83
atom 84 (202) (-28370, 5379, -4176) def
bond1 83
bond_direction 83 84
atom 85 (201) (-27501, 2889, 160) def
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bond_direction 84 85
atom 86 (202) (-25190, 6226, 1570) def
bond1 85
bond_direction 85 86
atom 87 (201) (-24321, 1662, 3615) def
bond1 12 86
bond_direction 86 87
atom 88 (202) (-22010, 12403, 6717) def
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bond_direction 87 88
atom 89 (201) (-21141, 16378, 5689) def
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bond_direction 88 89
atom 90 (202) (-18830, 16069, 9299) def
bond1 89
bond_direction 89 90
atom 91 (201) (-17961, 12713, 5590) def
bond1 14 90
bond_direction 90 91
atom 92 (202) (-15650, 10341, 8329) def
bond1 91
bond_direction 91 92
atom 93 (201) (-14781, 9807, 3357) def
bond1 15 92
bond_direction 92 93
atom 94 (202) (-12470, 6278, 4178) def
bond1 93
bond_direction 93 94
atom 95 (201) (-11601, 8768, -159) def
bond1 16 94
bond_direction 94 95
atom 96 (202) (-6363, -2374, -1568) def
bond1 95
bond_direction 95 96
atom 97 (201) (-2567, -5615, -3613) def
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bond_direction 96 97
atom 98 (202) (-256, -7486, -6715) def
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bond_direction 97 98
atom 99 (201) (612, -2592, -5687) def
bond1 18 98
bond_direction 98 99
atom 100 (202) (2923, -2282, -9297) def
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bond_direction 99 100
atom 101 (201) (3791, 1072, -5588) def
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bond_direction 100 101
atom 102 (202) (6102, 3444, -8327) def
bond1 101
bond_direction 101 102
atom 103 (201) (6971, 3978, -3355) def
bond1 20 23 102
bond_direction 103 23
bond_direction 102 103
atom 104 (0) (-85371, 15001, -2557) def
bond1 64
bond_direction 104 64
info chunk color = 153 0 51
DnaStrandMarker (DnaMarker2) (127, 127, 127) 65 67
info leaf forwarded = 97631488
egroup (DnaStrand1)
group (DnaStrand2) DnaStrand
info opengroup open = True
forward_ref (97654424) # DnaStrandMarker (DnaMarker3)
mol (DnaStrandChunk10) def
atom 105 (201) (-83780, 1547, 4446) def
bond1 1
atom 106 (202) (-82911, -3323, 3310) def
bond1 105
bond_direction 106 105
atom 107 (201) (-80600, -316, 1289) def
bond1 2 106
bond_direction 107 106
atom 108 (202) (-79731, -3588, -2492) def
bond1 107
bond_direction 108 107
atom 109 (201) (-77420, 32, -2359) def
bond1 3 108
bond_direction 109 108
atom 110 (202) (-76551, -392, -7342) def
bond1 109
bond_direction 110 109
atom 111 (201) (-74240, 2458, -5107) def
bond1 4 110
bond_direction 111 110
atom 112 (202) (-65655, 7173, -9388) def
bond1 111
bond_direction 112 111
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bond1 113
bond_direction 114 113
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bond_direction 115 114
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bond_direction 116 115
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bond_direction 117 116
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bond_direction 118 117
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bond_direction 119 118
atom 120 (202) (-40695, 9211, 7344) def
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bond_direction 120 119
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bond_direction 121 120
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bond1 121
bond_direction 122 121
atom 123 (201) (-30681, -3604, 5905) def
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bond_direction 123 122
atom 124 (202) (-29812, -8212, 7849) def
bond1 123
bond_direction 124 123
atom 125 (201) (-27501, -6967, 4446) def
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bond_direction 125 124
atom 126 (202) (-26632, -11837, 3310) def
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bond_direction 126 125
atom 127 (201) (-24321, -8830, 1289) def
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bond_direction 127 126
atom 128 (202) (-23452, -3233, -2492) def
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bond_direction 128 127
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bond_direction 129 128
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bond_direction 130 129
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bond_direction 132 131
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bond_direction 133 132
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bond_direction 134 133
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bond_direction 135 134
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bond_direction 136 135
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bond_direction 137 136
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bond_direction 138 137
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bond_direction 139 138
atom 140 (202) (1481, 4954, 7344) def
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bond_direction 140 139
atom 141 (201) (3791, 2102, 5109) def
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bond_direction 141 140
atom 142 (202) (4660, -483, 9390) def
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bond_direction 142 141
atom 143 (201) (6971, -1475, 5905) def
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bond_direction 143 142
atom 144 (202) (14576, -5489, 8088) def
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bond_direction 144 143
atom 145 (0) (-87806, 2315, 6552) def
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bond_direction 105 145
info chunk color = 0 0 153
DnaStrandMarker (DnaMarker3) (127, 127, 127) 105 107
info leaf forwarded = 97654424
mol (DnaStrandChunk11) def
atom 146 (202) (68770, -64299, 7962) def
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bond_direction 146 147
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bond_direction 147 148
atom 149 (201) (72401, -55970, 5109) def
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bond_direction 148 149
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bond_direction 149 150
atom 151 (201) (72225, -51973, 2361) def
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bond_direction 150 151
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bond_direction 151 152
atom 153 (201) (70453, -49310, -1287) def
bond1 152
bond_direction 152 153
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bond1 153
bond_direction 153 154
atom 155 (201) (66984, -48065, -4444) def
bond1 154
bond_direction 154 155
atom 156 (202) (66458, -45494, -7847) def
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bond_direction 155 156
atom 157 (201) (62364, -47781, -5903) def
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bond_direction 156 157
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bond_direction 157 158
atom 159 (201) (57144, -47341, -5093) def
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bond_direction 158 159
atom 160 (202) (53385, -48211, -7448) def
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bond_direction 159 160
atom 161 (201) (53113, -46069, -2719) def
bond1 160
bond_direction 160 161
atom 162 (202) (48903, -47344, -2297) def
bond1 161
bond_direction 161 162
atom 163 (201) (50657, -43938, 1248) def
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bond_direction 162 163
atom 164 (202) (47558, -42623, 3679) def
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bond_direction 163 164
atom 165 (201) (50496, -35873, 4446) def
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bond_direction 164 165
atom 166 (202) (48059, -34898, 7849) def
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bond_direction 165 166
atom 167 (201) (51038, -31276, 5905) def
bond1 166
bond_direction 166 167
atom 168 (202) (49751, -27173, 9714) def
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bond_direction 167 168
atom 169 (201) (49739, -23681, 5354) def
bond1 168
bond_direction 168 169
atom 170 (202) (48271, -18363, 6971) def
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bond_direction 169 170
atom 171 (201) (46776, -17696, 2565) def
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bond_direction 170 171
atom 172 (202) (45294, -13448, 2687) def
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atom 173 (201) (43181, -14059, -1287) def
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bond_direction 172 173
atom 174 (202) (44006, -10357, -3308) def
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bond_direction 173 174
atom 175 (201) (39712, -12814, -4444) def
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bond_direction 174 175
atom 176 (202) (39185, -10242, -7847) def
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bond_direction 175 176
atom 177 (201) (35092, -12530, -5903) def
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bond_direction 176 177
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bond_direction 177 178
atom 179 (201) (30306, -12385, -5107) def
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bond_direction 178 179
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bond_direction 179 180
atom 181 (201) (26405, -11502, -2359) def
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bond_direction 180 181
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bond_direction 181 182
atom 183 (201) (24066, -9230, 1374) def
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atom 184 (202) (19877, -9169, 3010) def
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bond_direction 184 185
atom 186 (0) (70309, -63938, 9145) def
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bond_direction 186 146
info chunk color = 0 0 153
egroup (DnaStrand2)
group (DnaSegment2) DnaSegment
info opengroup open = False
forward_ref (99507136) # DnaSegmentMarker (DnaMarker4)
mol (DnaAxisChunk4) def
atom 187 (208) (24194, 15872, -4581) def
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atom 189 (208) (23128, 24369, -3310) def
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atom 190 (208) (23937, 27681, -478) def
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atom 191 (208) (26305, 29908, 2537) def
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atom 192 (208) (32777, 36934, 4455) def
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atom 193 (208) (36672, 39719, 3252) def
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atom 194 (208) (36775, 41332, 3312) def
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atom 198 (208) (47917, 54724, -151) def
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atom 199 (208) (46878, 58125, -3310) def
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atom 200 (208) (47687, 61438, -478) def
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atom 201 (208) (50056, 63664, 2537) def
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atom 205 (208) (76321, 95780, 480) def
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atom 207 (0) (24605, 13315, -4408) def
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atom 208 (0) (78337, 100523, -4300) def
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info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker4) (127, 127, 127) 187 188
info leaf forwarded = 99507136
egroup (DnaSegment2)
group (DnaStrand4) DnaStrand
info opengroup open = True
forward_ref (99715872) # DnaStrandMarker (DnaMarker6)
mol (DnaStrandChunk8) def
atom 209 (201) (25781, 14765, 4446) def
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bond_direction 238 237
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atom 242 (202) (63598, 99567, 688) def
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bond_direction 244 243
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bond_direction 246 245
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atom 248 (202) (78759, 99033, 7962) def
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info chunk color = 0 255 0
DnaStrandMarker (DnaMarker6) (0, 255, 0) 209 211
info leaf forwarded = 99715872
mol (DnaStrandChunk12) def
atom 250 (201) (75881, -57207, -3355) def
atom 251 (202) (74913, -56883, -8327) def
bond1 250
bond_direction 251 250
atom 252 (201) (71611, -56631, -5588) def
bond1 251
bond_direction 252 251
atom 253 (202) (68479, -58116, -9297) def
bond1 252
bond_direction 253 252
atom 254 (201) (66759, -56541, -5687) def
bond1 253
bond_direction 254 253
atom 255 (202) (62446, -59013, -6715) def
bond1 254
bond_direction 255 254
atom 256 (201) (62400, -56040, -3613) def
bond1 255
bond_direction 256 255
atom 257 (202) (58341, -58300, -1568) def
bond1 256
bond_direction 257 256
atom 258 (201) (59420, -54386, -158) def
bond1 257
bond_direction 258 257
atom 259 (202) (56952, -55316, 4177) def
bond1 258
bond_direction 259 258
atom 260 (201) (58178, -51279, 3357) def
bond1 259
bond_direction 260 259
atom 261 (202) (58737, -49982, 8259) def
bond1 260
bond_direction 261 260
atom 262 (201) (57936, -46680, 5604) def
bond1 261
bond_direction 262 261
atom 263 (202) (59806, -41010, 9281) def
bond1 262
bond_direction 263 262
atom 264 (201) (58758, -37576, 5873) def
bond1 263
bond_direction 264 263
atom 265 (202) (61657, -32951, 6056) def
bond1 264
bond_direction 265 264
atom 266 (201) (59198, -32962, 3771) def
bond1 265
bond_direction 266 265
atom 267 (202) (61263, -28767, 1815) def
bond1 266
bond_direction 267 266
atom 268 (201) (58061, -29552, 160) def
bond1 267
bond_direction 268 267
atom 269 (202) (59414, -27288, -4176) def
bond1 268
bond_direction 269 268
atom 270 (201) (55224, -27778, -3355) def
bond1 269
bond_direction 270 269
atom 271 (202) (54249, -26639, -8229) def
bond1 270
bond_direction 271 270
atom 272 (201) (50933, -26902, -5559) def
bond1 271
bond_direction 272 271
atom 273 (202) (48495, -28477, -9326) def
bond1 272
bond_direction 273 272
atom 274 (201) (45728, -26535, -5814) def
bond1 273
bond_direction 274 273
atom 275 (202) (40095, -27657, -6508) def
bond1 274
bond_direction 275 274
atom 276 (201) (35129, -20788, -3613) def
bond1 275
bond_direction 276 275
atom 277 (202) (31069, -23048, -1568) def
bond1 276
bond_direction 277 276
atom 278 (201) (32148, -19134, -158) def
bond1 277
bond_direction 278 277
atom 279 (202) (29680, -20065, 4178) def
bond1 278
bond_direction 279 278
atom 280 (201) (30906, -16028, 3357) def
bond1 279
bond_direction 280 279
atom 281 (202) (30759, -15019, 8329) def
bond1 280
bond_direction 281 280
atom 282 (201) (31098, -11725, 5590) def
bond1 281
bond_direction 282 281
atom 283 (202) (33115, -8906, 9299) def
bond1 282
bond_direction 283 282
atom 284 (201) (31870, -6934, 5689) def
bond1 283
bond_direction 284 283
atom 285 (202) (33900, -2823, 6972) def
bond1 284
bond_direction 285 284
atom 286 (201) (30399, -2627, 3598) def
bond1 285
bond_direction 286 285
atom 287 (202) (33363, 970, 1233) def
bond1 286
bond_direction 287 286
atom 288 (201) (28991, 886, 292) def
bond1 287
bond_direction 288 287
atom 289 (202) (27557, 7991, 1987) def
bond1 209 288
bond_direction 209 289
bond_direction 289 288
atom 290 (0) (79994, -59016, -2335) def
bond1 250
bond_direction 250 290
info chunk color = 0 255 0
egroup (DnaStrand4)
group (DnaSegment3) DnaSegment
info opengroup open = False
forward_ref (99748720) # DnaSegmentMarker (DnaMarker7)
mol (DnaAxisChunk6) def
atom 291 (208) (68824, -63104, -2535) def
bond1 250 147
atom 292 (208) (66272, -61093, 480) def
bond1 252 149 291
atom 293 (208) (65178, -57863, 3312) def
bond1 254 151 292
atom 294 (208) (65180, -53717, 4879) def
bond1 256 153 293
atom 295 (208) (65499, -49306, 4583) def
bond1 258 155 294
atom 296 (208) (65236, -45383, 2537) def
bond1 260 157 295
atom 297 (208) (59867, -39898, -355) def
bond1 262 159 296
atom 298 (208) (57568, -37174, -4089) def
bond1 264 161 297
atom 299 (208) (53532, -35783, -4368) def
bond1 266 163 298
atom 300 (208) (51981, -34632, -4581) def
bond1 268 165 299
atom 301 (208) (48167, -33675, -2535) def
bond1 270 167 300
atom 302 (208) (48067, -32219, 1693) def
bond1 272 169 301
atom 303 (208) (47616, -27280, 3652) def
bond1 274 171 302
atom 304 (208) (37909, -18467, 4879) def
bond1 276 173 303
atom 305 (208) (38228, -14055, 4583) def
bond1 278 175 304
atom 306 (208) (37962, -10131, 2537) def
bond1 280 177 305
atom 307 (208) (36436, -7262, -478) def
bond1 282 179 306
atom 308 (208) (33452, -5612, -3310) def
bond1 284 181 307
atom 309 (208) (29781, -5995, -4575) def
bond1 286 183 308
atom 310 (208) (22455, -3144, -4180) def
bond1 288 185 309
atom 311 (0) (20040, -2203, -4050) def
bond1 310
atom 312 (0) (70318, -64281, -4301) def
bond1 291
info chunk color = 128 128 128
DnaSegmentMarker (DnaMarker7) (127, 127, 127) 310 309
info leaf forwarded = 99748720
egroup (DnaSegment3)
egroup (DnaGroup1)
egroup (60bp_PAM3_3way_junction_poor)
end1
group (Clipboard)
info opengroup open = False
egroup (Clipboard)
end molecular machine part 60bp_PAM3_3way_junction_poor