PreferencesDialog 0 0 620 600 620 600 Preferences 9 6 0 System Options 9 6 Qt::NonModal 0 7 0 0 170 0 Categories General Color Graphics Area Zoom, Pan and Rotate Rulers Atoms Bonds DNA Minor Groove Error Indicators Base Orientation Indicators Adjust Lighting Plug-ins Undo Window Reports Tooltips 3 9 6 0 4 Sponsor logos download permission 9 0 Always ask permission to download sponsor logos from the Nanorex server Always ask before downloading Never ask permission before downloading sponsor logos from the Nanorex server Never ask before downloading Never download sponsor logos from the Nanorex server Never download Build Chunks settings 9 0 Build mode's default setting for Autobonding at startup (enabled/disabled) Autobond Build mode's default setting for Highlighting at startup (enabled/disabled) Hover highlighting Build mode's default setting for Water at startup (enabled/disabled) Water Automatically select atoms when depositing Auto select atoms of deposited objects Offset factor for pasting objects 9 6 0 4 Dna objects: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 Chunk objects: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Vertical 20 1 Qt::Horizontal 40 20 9 6 Qt::Horizontal 40 20 0 4 Background 9 6 Enable fog 0 4 Color scheme: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Hover highlighting style 9 6 Color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Selection style 9 6 Color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 23 23 23 23 QFrame::Box QFrame::Plain Choose... false 0 2 Halo width: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter pixels 10 1 5 Restore default value ../../../../../:icons/UserPrefsDialog_image0 Qt::Horizontal 20 20 Qt::Vertical 20 16 9 6 0 4 0 2 Global display style at start-up: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Display compass true true 9 6 Qt::Horizontal 40 20 0 0 0 4 Location : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Upper right Upper left Lower left Lower right Show/Hide Display Compass Display compass labels true Axes 9 6 Show/Hide Point of View Axis Display point of view (POV) axis false Show/Hide Origin Axis Display origin axis true Cursor textDisplay/hide the cursor text. The cursor text displays information next to the cursor during some interactive modeling commands, such as Insert DNA Cursor text true 9 4 0 6 Font size: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 Font sizeFont point size for cursor text. pt 16 8 11 Restore default value Restore the default font size. ../../../../../:icons/UserPrefsDialog_image0 Color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 0 0 0 0 23 23 23 23 Current color of cursor text. QFrame::Box QFrame::Plain Choose cursor text color. Choose... false Qt::Horizontal 40 20 0 0 Show/hide the Confirmation Corner Display confirmation cornerDisplays/hides the Confirmation Corner. Display confirmation corner false Enable anti-aliasingEnables/disables anti-aliasing. NE1 must be restarted in order for this setting to take effect.Attention! Enabling anti-aliasing works only on graphics card hardware that supports it. This is likely to slow drawing performance. Enable anti-aliasing (next session) Qt::Vertical 223 111 Qt::Horizontal 40 20 9 6 Qt::Horizontal 231 20 0 4 View rotation settings 9 6 0 4 0 0 Qt::Horizontal QSizePolicy::Fixed 101 20 0 0 0 0 View animation speed: false Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Horizontal QSizePolicy::Fixed 101 20 Mouse rotation speed: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter mouseSpeedDuringRotation_slider 0 6 Qt::Horizontal QSizePolicy::Expanding 87 20 false Restore default value ../../../../../:icons/UserPrefsDialog_image0 Qt::Horizontal QSizePolicy::Expanding 23 16 Qt::Horizontal QSizePolicy::Expanding 23 20 Fast 0 0 0 0 125 0 30 100 50 Qt::Horizontal Fast Qt::Horizontal QSizePolicy::Expanding 88 20 Slow 0 0 0 0 125 0 View Animation Speed -300 -25 Qt::Horizontal false Restore default value ../../../../../:icons/UserPrefsDialog_image0 Slow 0 0 Enable/disable animation between current view and a new view Animate between views true Qt::Horizontal 40 20 Mouse wheel settings Mouse wheel zoom settings 9 6 0 4 0 4 Direction: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Zoom in: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Zoom out: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 Pull/push wheel to zoom in/out Push/pull wheel to zoom in/out Center about cursor position Center about screen Center about cursor position Center about screen 0 4 Hover highlighting timeout interval: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter The hover highlighting timeout interval, which delays hover highlighting while zooming via the mouse wheel. seconds 1 1.000000000000000 0.100000000000000 0.500000000000000 Pan settings 9 6 View direction Camera direction Arrow keys control: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Vertical 20 161 9 6 Qt::Horizontal 40 20 0 6 Rulers 9 6 Opacity: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Origin: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Lower left Upper left Lower right Upper right 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false % 100 70 Both rulers Vertical ruler only Horizontal ruler only Display: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Show rulers in perspective view Qt::Vertical 20 40 9 6 Qt::Horizontal 40 20 0 6 Colors 9 2 0 6 Qt::Horizontal QSizePolicy::Expanding 40 20 Change Element Colors... false 9 2 0 6 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Bondpoint highlighting : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Atom highlighting : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false false Bondpoint hotspot : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 6 Qt::Horizontal QSizePolicy::Expanding 40 20 Restore Default Colors false 0 6 0 6 0 2 Set Atom Scale factor for Ball and Stick display mode Ball and stick atom scale : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter CPK Atom Scale factor for CPK display mode CPK atom scale : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Sets graphics quality for atoms (and bonds) 2 Low Medium High Variable Level of detail for atoms (and bonds) Level of detail : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 6 Restore default value ../../../../../:icons/UserPrefsDialog_image0 Restore default value ../../../../../:icons/UserPrefsDialog_image0 Set Atom Scale factor for Ball and Stick display mode % 125 50 100 3 1.000000000000000 0.500000000000000 0.005000000000000 0.775000000000000 Qt::Horizontal QSizePolicy::Expanding 16 20 Overlapping atom indicators Force to keep bonds during transmute Qt::Vertical QSizePolicy::Expanding 20 30 9 6 Qt::Horizontal 40 20 0 6 Colors 9 4 0 6 0 0 0 0 Bond highlighting : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false false 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Vane/Ribbon : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Ball and stick cylinder : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 0 0 0 0 0 Bond stretch : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false 0 6 Qt::Horizontal QSizePolicy::Expanding 20 20 Restore Default Colors false 0 4 0 2 Set scale (size) factor for the cylinder representing bonds in Ball and Stick display mode Ball and stick bond scale : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Bond thickness (in pixels) for Lines Display Mode Bond line thickness : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 Set scale (size) factor for the cylinder representing bonds in Ball and Stick display mode % 400 50 100 Bond thickness (in pixels) for Lines Display Mode pixel 4 1 Qt::Horizontal QSizePolicy::Expanding 16 20 High Order Bonds 9 0 Display high order bonds using multiple cylinders Multiple cylinders true Display pi systems in high order bonds as Vanes Vanes Display pi systems in high order bonds as Ribbons Ribbons 0 0 Display Bond Type Label Show bond type letters Enable/Disable Valence Error Checker Show valence errors Enable/Disable Display of Bond Stretch Indicators Show bond stretch indicators Qt::Vertical QSizePolicy::Expanding 20 144 9 6 0 6 DNA default values 9 2 0 6 0 0 0 0 Strand2 color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 0 0 0 Strand1 color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 0 0 0 0 23 23 23 23 QFrame::Box QFrame::Plain Choose... false B-DNA 0 4 0 0 0 0 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Rise: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 2 0.100000000000000 0 0 0 0 Conformation: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 0 0 0 0 23 23 23 23 QFrame::Box QFrame::Plain Choose... false 0 0 0 0 Bases per turn: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 0 0 0 Segment color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Angstroms 3 0.010000000000000 0 4 Qt::Horizontal 40 20 Restore Factory Defaults false Strand arrowhead display options 9 6 0 2 5' End Custom color: 0 4 0 0 0 0 23 23 23 23 QFrame::Box QFrame::Plain Choose... false 0 2 3' End Custom color: 0 4 0 0 0 0 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Show arrows on 5' ends true Show arrows on 3' ends true Show arrows on back bones Qt::Vertical 20 421 Qt::Horizontal 40 20 9 6 Qt::Horizontal 40 20 0 6 Display minor groove error indicators true false 9 6 0 2 0 0 0 0 Minimum angle: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 0 0 0 Maximum angle: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 degrees 179 0 degrees 179 0 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false 0 4 Qt::Horizontal 40 20 Restore Factory Defaults false Qt::Vertical 20 40 9 6 Qt::Horizontal 40 20 0 4 Display base orientation indicators true false 9 6 View plane (up) View plane (out) View plane (right) Inverse indicators color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false Enable inverse indicators 0 0 0 0 Plane normal: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 0 0 0 Angle threshold: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 1000000.000000000000000 1.000000000000000 1 180.000000000000000 0.100000000000000 30.000000000000000 0 4 23 23 23 23 QFrame::Box QFrame::Plain Choose... false 0 0 0 0 Terminal base distance: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Indicators color: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Vertical 20 111 9 6 0 6 Adjust physics engine 9 4 Choose the simulation engine with which to minimize energy. NanoDynamics-1 (Default) GROMACS with ND1 Force Field Background GROMACS with ND1 Force Field Enable electrostatics for DNA reduced model Watch motion in real time true 9 0 Update every 2 seconds, or faster if it doesn't slow adjustments by more than 20% Update as fast as possible true 0 6 Specify how often to update the screen during adjustments Update every Specify how often to update the screen during adjustments 9999 1 1 Specify how often to update the screen during adjustments frames seconds minutes hours 0 0 0 0 Convergence criteria 9 4 0 2 Target RMS force (pN) EndRMS: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Target max force (pN) EndMax: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Cutover RMS force (pN) CutoverRMS: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Cutover max force (pN) CutoverMax: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 2 0 0 0 0 pN 2 101.000000000000000 1.000000000000000 0 0 0 0 pN 2 101.000000000000000 0.000000000000000 0 0 0 0 pN 2 101.000000000000000 0.000000000000000 0 0 0 0 pN 2 101.000000000000000 0.000000000000000 Qt::Horizontal QSizePolicy::MinimumExpanding 80 20 Qt::Vertical 20 40 0 0 0 0 16 16 ../../../../../../../:icons/MinimizeEnergyPropDialog_image6 false false true Qt::Horizontal 40 20 9 6 0 4 true Directional light properties 9 6 0 2 0 6 1 (On) 2 (On) 3 (Off) Qt::Horizontal QSizePolicy::Expanding 60 20 0 6 Qt::Horizontal QSizePolicy::Expanding 40 20 0 6 0 6 25 0 QFrame::Box QFrame::Plain Choose... false Qt::Horizontal QSizePolicy::Expanding 40 20 0 6 40 32767 true 100 Qt::Horizontal 10 0 6 40 32767 true 100 Qt::Horizontal 10 0 6 40 32767 true 100 Qt::Horizontal 10 0 6 Qt::Horizontal QSizePolicy::Expanding 40 20 0 6 Qt::Horizontal QSizePolicy::Expanding 40 20 0 6 32767 Qt::Horizontal QSizePolicy::Expanding 40 20 0 2 Light : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter On : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Color : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Ambient : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Diffuse : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Specular : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter X : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Y : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Z : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter true Material specular properties 9 4 0 2 0 0 On: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Horizontal QSizePolicy::Expanding 70 20 Finish: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Horizontal QSizePolicy::Expanding 40 20 Shininess: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Horizontal QSizePolicy::Expanding 40 20 Brightness: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 0 0 21 Qt::Horizontal QSizePolicy::Fixed 50 20 0 0 0 0 50 32767 5 true Qt::Horizontal QSizePolicy::Fixed 50 20 50 32767 5 true Qt::Horizontal QSizePolicy::Fixed 50 20 50 32767 5 true 0 0 Qt::Horizontal QSizePolicy::Expanding 100 20 0 4 Metal Qt::Horizontal QSizePolicy::Fixed 40 20 Plastic 0 100 50 Qt::Horizontal 5 0 4 Flat Qt::Horizontal QSizePolicy::Expanding 16 20 Glossy 15 60 15 Qt::Horizontal 5 0 4 Low Qt::Horizontal QSizePolicy::Expanding 16 20 High 0 100 50 Qt::Horizontal 5 Qt::Vertical 20 5 0 6 Qt::Horizontal QSizePolicy::Expanding 20 20 Restore Defaults false Qt::Horizontal QSizePolicy::Expanding 30 20 9 6 Location of executables 9 6 0 0 true Enable QuteMolX true 0 0 0 0 60 0 QuteMolX: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false The full path to the QuteMolX executable file. ... 0 0 true Enable NanoHive-1 true 0 0 0 0 60 0 NanoHive-1: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false The full path to the NanoHive-1 executable file. ... 0 0 Enable POV-Ray 0 0 0 0 60 0 POV-Ray: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false 32767 32767 The full path to the POV-Ray executable file. 32767 ... 0 0 Enable MegaPOV 0 0 0 0 60 0 MegaPOV: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false 32767 32767 The full path to the MegaPOV executable file (megapov.exe). 32767 ... 0 2 true 15 15 15 15 Custom directory for POV libraries true POV include dir: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false Select custom POV include directory ... 0 0 Enable GAMESS 0 0 0 0 60 0 GAMESS: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false 32767 32767 The gamess executable file. Usually it's called gamess.??.x or ??gamess.exe. 32767 ... 0 0 Enable GROMACS GROMACS: false The full path to the mdrun executable file for GROMACS. ... 0 0 Enable cpp (needed by GROMACS) cpp: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter false The full path to the C-preprocessor (cpp) executable file for GROMACS to use. ... 0 0 Enable NanoVision-1 NanoVision-1: false The full path to the mdrun executable file for NanoVision-1. ... 0 0 Enable Rosetta Rosetta: false The full path to Rosetta executable file. ... 0 0 Enable Rosetta Database Rosetta DB: false The top-level Rosetta database directory. ... Qt::Vertical QSizePolicy::Expanding 384 71 9 6 Qt::Horizontal 40 20 0 4 0 2 Undo will switch to the view saved with each structural change. Restore view when undoing structural changes Specify Automatic or Manual Checkpoints at program startup. Automatic checkpoints 0 6 Undo stack memory limit: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter MB 99999 Qt::Vertical 20 40 9 6 0 4 Window position and size 9 6 Always save current position and size when quitting 0 6 Save current window position and size for next startup Save Current Size false Save current window position and size for next startup Restore Saved Size false 0 6 Current size: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Saved size: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter 0 6 pixels 2048 640 640 true pixels 2000 480 480 true x Qt::AlignCenter x Qt::AlignCenter Qt::Horizontal QSizePolicy::Expanding 70 20 0 4 Window Border Caption Format Window caption format 9 6 Display full path of part 0 0 32767 32767 Caption suffix for modified file: 0 0 32767 32767 Caption prefix for modified file: Qt::Horizontal 40 20 Qt::Vertical 20 40 0 4 Use custom font true false 9 6 Make selected font the default font false 0 6 QFontComboBox::AllFonts|QFontComboBox::ProportionalFonts|QFontComboBox::ScalableFonts Arial 0 6 24 6 9 Qt::Horizontal 40 20 0 6 Font : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Size : Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter Qt::Horizontal QSizePolicy::Expanding 280 20 9 6 0 4 History preferences 9 6 Include message serial number Include message timestamp Qt::Vertical 20 40 Qt::Horizontal 40 20 9 6 Qt::Horizontal QSizePolicy::Expanding 90 20 0 4 Atom tooltip options 9 0 Chunk information false Mass information XYZ coordinates false XYZ distance deltas Include Vdw radii in atom distance tooltip 0 4 0 6 Distance precision: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter dynamicToolTipAtomDistancePrecision_spinbox Sets the number of digits after the decimal places decimal places 5 1 3 Sets the number of digits after the decimal places decimal places 5 1 3 Angle precision: Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter dynamicToolTipBendAnglePrecision_spinbox Qt::Horizontal 40 20 Bond tooltip options 9 6 Chunk information Distance between atom centers Qt::Vertical QSizePolicy::Expanding 20 161 0 6 Qt::Horizontal 321 23 OK