This enables MegaPOV as a plug-in. MegaPOV is a free addon raytracing program available from http://megapov.inetart.net/. Both MegaPOV and POV-Ray must be installed on your computer before you can enable the MegaPOV plug-in. MegaPOV allows rendering to happen silently on Windows (i.e. no POV_Ray GUI is displayed while rendering).
""", "chooser" : """The full path to the MegaPOV executable file (megapov.exe).""", "button" : """Allows you to choose the path to the MegaPOV executable.""" }, "POV include dir": { "checkbox" : """Specify a directory for where to find POV-Ray or MegaPOV include files such as transforms.inc.
""", "chooser" : """Specify a directory for where to find POV-Ray or MegaPOV include files such as transforms.inc.
""", "button" : """Allows you to choose the path to the include directory.""" }, "Rosetta": { "checkbox" : """This enables the use of Rosetta as a plug-in.""", "chooser" : """The full path to the Rosetta executable file.""", "button" : """Allows you to choose the path to the Rosetta executable.""" }, "Rosetta DB": { "checkbox" : """This enables the selection of the path to the Rosetta Database.""", "chooser" : """The full path to the Rosetta Database.""", "button" : """Allows you to choose the path to the Rosetta Database.""" }, "QuteMolX" : { "checkbox" : """This enables QuteMolX as a plug-in. QuteMolX is available for download from http://nanoengineer-1.com/QuteMolX. QuteMolX must be installed on your computer before you can enable this plug-in.
""", "chooser" : """The full path to the QuteMolX executable.""", "button" : """Allows you to choose the path to the QuteMolX executable.""" }, "GROMACS" : { "checkbox" : """This enables GROMACS as a plug-in. GROMACS is a free rendering program available from http://www.gromacs.org/. GROMACS must be installed on your computer before you can enable the GROMACS plug-in. Check this and choose the the path to the mdrun executable from your GROMACS distribution.
""", "chooser" : """The full path to the mdrun executable file for GROMACS.""", "button" : """This opens up a file chooser dialog so that you can specify the location of the GROMACS executable (mdrun).
""" }, "cpp" : { "checkbox" : """This enables selecting the C-preprocessor that GROMACS will use""", "chooser" : """The full path to the C-preprocessor (cpp) executable file for GROMACS to use.
""", "button" : """Allows you to choose the path to the C-preprocessor (cpp) executable file for GROMACS to use.
""" }, "POV-Ray" : { "checkbox" : """This enables POV-Ray as a plug-in. POV-Ray is a free raytracing program available from http://www.povray.org/. POV-Ray must be installed on your computer before you can enable the POV-Ray plug-in.
""", "chooser" : """The full path to the POV-Ray executable.""", "button" : """Allows you to choose the path to the POV-Ray executable.""" } } import sys def whatsThis_PreferencesDialog(preferencesDialog): """ Assigning the I{What's This} text for the Preferences dialog. """ _pd = preferencesDialog setWhatsThis_General(_pd) setWhatsThis_Graphics_Area(_pd) setWhatsThis_Zoom_Pan_and_Rotate(_pd) setWhatsThis_Rulers(_pd) setWhatsThis_Atoms(_pd) setWhatsThis_Bonds(_pd) setWhatsThis_DNA(_pd) setWhatsThis_Minor_groove_error_indicator(_pd) # setWhatsThis_Base_orientation_indicator(_pd) setWhatsThis_Adjust(_pd) setWhatsThis_Plugins(_pd) setWhatsThis_Undo(_pd) setWhatsThis_Window(_pd) #setWhatsThis_Reports(_pd) #setWhatsThis_Tooltips(_pd) return def setWhatsThis_General(pd): if sys.platform == 'darwin': _keyString = "(Cmd + C and Cmd + V) respectively" else: _keyString = "(Ctrl + C and Ctrl + V) respectively" pd.logo_download_RadioButtonList.setWhatsThis( """Always ask before downloading
When sponsor logos have been updated, ask permission to download them.
Never ask before downloading
When sponsor logos have been updated, download them without asking permission to do so.
Never download
Don't ask permission to download sponsor logos and don't download them.
""") pd.autobondCheckBox.setWhatsThis("""Default setting for Autobonding at startup (enabled/disabled)
""") pd.hoverHighlightCheckBox.setWhatsThis("""Default setting for Hover highlighting at startup (enabled/disabled)
""") pd.waterCheckBox.setWhatsThis("""Default setting for Water (surface) at startup (enabled/disabled)
""") pd.autoSelectAtomsCheckBox.setWhatsThis("""Auto select atoms of deposited objectWhen depositing atoms, clipboard chunks or library parts, their atoms will automatically be selected.""") _text = """Offset scale factor for pasting chunks
When one or more chunks, that are placed as independent nodes in the Model Tree, are copied and then pasted using the modifier keys %s, this scale factor determines the offset of the pasted chunks from the original chunks. Note that if the copied selection includes any DNA objects such as DNA segments, strands etc, the program will use an offset scale that is used for pasting the DNA objects instead of this offset scale)
"""%(_keyString) pd.pasteOffsetForChunks_doublespinbox.setWhatsThis(_text) pd.pasteOffsetForChunks_doublespinbox.labelWidget.setWhatsThis(_text) _text = """Offset scale factor for pasting Dna objectsWhen one or more DNA objects such as DNA segments, strands etc, are copied and then pasted using the modifier keys %s, this scale factor determines the offset of the pasted DNA objects from the original ones. Note that this also applies to pasting chunks within a group in the Model Tree.
"""%(_keyString) pd.pasteOffsetForDNA_doublespinbox.setWhatsThis(_text) pd.pasteOffsetForDNA_doublespinbox.labelWidget.setWhatsThis(_text) return def setWhatsThis_Graphics_Area(pd): pd.globalDisplayStyleStartupComboBox.setWhatsThis( """Changes the appearance of any objects in the work place.""") pd.display_compass_CheckBox.setWhatsThis("""Display compass
Shows/Hides the display compass""") _text = """Changes the location of the display compass.""" pd.compass_location_ComboBox.setWhatsThis(_text) pd.compass_location_ComboBox.labelWidget.setWhatsThis(_text) pd.display_compass_labels_checkbox.setWhatsThis( """Shows/Hides the display compass axis labels.""") pd.display_origin_axis_checkbox.setWhatsThis("""
Display origin axis
Shows/Hides the origin axis""") pd.display_pov_axis_checkbox.setWhatsThis("""
Display point of view axis
Shows/Hides the point of view axis""") pd.cursor_text_font_size_SpinBox.setWhatsThis("""Sets the font size for the standard cursor text.""") pd.cursor_text_reset_Button.setWhatsThis( """Resets the cursor text font size to the default value.""") _text = """Sets the color of the cursor text.""" pd.cursor_text_color_ComboBox.setWhatsThis(_text) pd.cursor_text_color_ComboBox.labelWidget.setWhatsThis(_text) pd.display_confirmation_corner_CheckBox.setWhatsThis( """Enables/Disables the display of the "Confirmation Corner" within the draw window""") pd.anti_aliasing_CheckBox.setWhatsThis( """Enables/Disables anti-aliased text.
This will not be in effect until the next session.
""") return def setWhatsThis_Zoom_Pan_and_Rotate(pd): pd.animate_views_CheckBox.setWhatsThis("""Animate between views
Enables/disables animation when switching between the current view and a new view.
""") pd.view_animation_speed_Slider.setWhatsThis("""View animation speed
Sets the animation speed when animating between views (i.e. Front view to Right view). It is recommended that this be set to Fast when working on large models.
""") pd.view_animation_speed_reset_ToolButton.setWhatsThis( """Resets the animation speed to the default value.""") pd.mouse_rotation_speed_Slider.setWhatsThis("""Mouse rotation speed
Specifies the speed factor to use when rotating the view by dragging the mouse (i.e. during the Rotate command or when using the middle mouse button).
""") pd.mouse_rotation_speed_reset_ToolButton.setWhatsThis( """Resets the mouse rotation speed to the default value.""") _text = """Sets the zoom direction for the mouse scroll wheel""" pd.zoom_directon_ComboBox.setWhatsThis(_text) pd.zoom_directon_ComboBox.labelWidget.setWhatsThis(_text) _text = """Sets where the image centers on when zooming in.""" pd.zoom_in_center_ComboBox.setWhatsThis(_text) pd.zoom_in_center_ComboBox.labelWidget.setWhatsThis(_text) _text = """Sets where the image centers on when zooming out.""" pd.zoom_out_center_ComboBox.setWhatsThis(_text) pd.zoom_out_center_ComboBox.labelWidget.setWhatsThis(_text) _text = """Sets the length of time that the mouse will "hover" over an object before highlighting it.
""" pd.hover_highlighting_timeout_SpinBox.setWhatsThis(_text) pd.hover_highlighting_timeout_SpinBox.labelWidget.setWhatsThis(_text) return def setWhatsThis_Rulers(pd): _text = """This determines which rulers to display""" pd.display_rulers_ComboBox.setWhatsThis(_text) pd.display_rulers_ComboBox.labelWidget.setWhatsThis(_text) _text = """This determines which corner of the draw area the rulers will use as their origin.
""" pd.origin_rulers_ComboBox.setWhatsThis(_text) pd.origin_rulers_ComboBox.labelWidget.setWhatsThis(_text) _text = """Determines the background color or the displayed rulers.""" pd.ruler_color_ColorComboBox.setWhatsThis(_text) pd.ruler_color_ColorComboBox.labelWidget.setWhatsThis(_text) _text = """Determines how opaque the rulers will look.""" pd.ruler_opacity_SpinBox.setWhatsThis(_text) pd.ruler_opacity_SpinBox.labelWidget.setWhatsThis(_text) pd.show_rulers_in_perspective_view_CheckBox.setWhatsThis( """Enables/Disables the rulers when using the perspective view.""") return def setWhatsThis_Atoms(pd): pd.change_element_colors_PushButton.setWhatsThis( """This brings up another dialog which allows the user to change the colors that each of the avaliable atoms is drawn in.
""") #_text = """Sets the color used when highlighting atoms.""" #pd.atom_highlighting_ColorComboBox.setWhatsThis(_text) #pd.atom_highlighting_ColorComboBox.labelWidget.setWhatsThis(_text) #_text = """Sets the color used when hightlighting bondpoints.""" #pd.bondpoint_highlighting_ColorComboBox.setWhatsThis(_text) #pd.bondpoint_highlighting_ColorComboBox.labelWidget.setWhatsThis(_text) #_text = """Sets the color used when highlighting bondpoint highlights""" #pd.bondpoint_hotspots_ColorComboBox.setWhatsThis(_text) #pd.bondpoint_hotspots_ColorComboBox.labelWidget.setWhatsThis(_text) pd.restore_element_colors_PushButton.setWhatsThis( """Restores the atom and bondpoint hightlighting colors to their default colors.
""") _text = \ """Level of detail
Sets the level of detail for atoms and bonds.
High = Best graphics quality (slowest rendering speed)
Medium = Good graphics quality
Low = Poor graphics quality (fastest rendering speed)
Variable automatically switches between High, Medium and Low
based on the model size (number of atoms).
Ball and stick atom scale
Sets the ball and stick atom scale factor. It is best to change the scale factor while the current model is displayed in ball and stick mode.""" pd.ball_and_stick_atom_scale_SpinBox.setWhatsThis(_text) pd.ball_and_stick_atom_scale_reset_ToolButton.setWhatsThis( """
Sets the ball and stick atom scale factor back to its default value
""") pd.CPK_atom_scale_doubleSpinBox.setWhatsThis( """CPK atom scale
Changes the CPK atom scale factor. It is best to change the scale factor while in CPK display mode so you can see the graphical effect of changing the scale.""") pd.CPK_atom_scale_reset_ToolButton.setWhatsThis( """
Sets the CPK atom scale factor back to its default value
""") #pd.overlapping_atom_indicators_CheckBox.setWhatsThis(""" """) #pd.force_to_keep_bonds_during_transmute_CheckBox.setWhatsThis(""" """) return def setWhatsThis_Bonds(pd): #pd.bond_highlighting_ColorComboBox.setWhatsThis(""" """) #pd.ball_and_stick_cylinder_ColorComboBox.setWhatsThis(""" """) #pd.bond_stretch_ColorComboBox.setWhatsThis(""" """) #pd.vane_ribbon_ColorComboBox.setWhatsThis(""" """) pd.restore_bond_colors_PushButton.setWhatsThis( """Restores the colors used for bond functions to their default values.
""") _text = \ """Ball and stick bond scale
Set scale (size) factor for the cylinder representing bonds in ball and stick display mode""" pd.ball_and_stick_bond_scale_SpinBox.setWhatsThis(_text) pd.ball_and_stick_bond_scale_SpinBox.labelWidget.setWhatsThis(_text) _text = \ "Bond line thickness"\ "
"\ "Sets the line thickness to n pixels wheneven bonds "\ "are rendered as lines (i.e. when the global display style is set to "\ "Lines display style)."\ "
" pd.bond_line_thickness_SpinBox.setWhatsThis(_text) pd.bond_line_thickness_SpinBox.labelWidget.setWhatsThis(_text) _text = """Multiple cylinders
High order bonds are displayed using multiple cylinders.
Double bonds are drawn with two cylinders.
Triple bonds are drawn with three cylinders.
Aromatic bonds are drawn as a single cylinder with a
short green cylinder in the middle.
Vanes
High order bonds are displayed using Vanes.
Vanes represent pi systems in high order bonds and are rendered as rectangular polygons. The orientation of the vanes approximates the orientation of the pi system(s).
Create an acetylene or ethene molecule and select this option to see how vanes are rendered.
Ribbons
High order bonds are displayed using Ribbons.
Ribbons represent pi systems in high order bonds and are rendered as ribbons. The orientation of the ribbons approximates the orientation of the pi system.
Create an acetylene or ethene molecule and select this option to see how ribbons are rendered.
""" pd.high_order_bonds_RadioButtonList.setWhatsThis(_text) pd.show_bond_type_letters_CheckBox.setWhatsThis( """Show bond type letters
Shows/Hides bond type letters (labels) on top of bonds.
Bond type letters:Show valence errors
Enables/Disables valence error checker.
When enabled, atoms with valence errors are displayed with a pink wireframe sphere. This indicates that one or more of the atom's bonds are not of the correct order (type), or that the atom has the wrong number of bonds, or (for PAM DNA pseudoatoms) that there is some error in bond directions or in which PAM elements are bonded. The error details can be seen in the tooltip for the atom.""") pd.show_bond_stretch_indicators_CheckBox.setWhatsThis( """Enables/Disables the display of bond stretch indicators""") return def setWhatsThis_DNA(pd): # pd.conformation_ComboBox.setWhatsThis(""" """) # pd.bases_per_turn_DoubleSpinBox.setWhatsThis(""" """) # pd.rise_DoubleSpinBox.setWhatsThis(""" """) # pd.strand1_ColorComboBox.setWhatsThis(""" """) # pd.strand2_ColorComboBox.setWhatsThis(""" """) # pd.segment_ColorComboBox.setWhatsThis(""" """) pd.restore_DNA_colors_PushButton.setWhatsThis( """Restores the default colors for strand 1, strand 2, and segments of DNA.
""") # pd.show_arrows_on_backbones_CheckBox.setWhatsThis(""" """) # pd.show_arrows_on_3prime_ends_CheckBox.setWhatsThis(""" """) # pd.show_arrows_on_5prime_ends_CheckBox.setWhatsThis(""" """) # pd.three_prime_end_custom_ColorComboBox.setWhatsThis(""" """) # pd.five_prime_end_custom_ColorComboBox.setWhatsThis(""" """) return def setWhatsThis_Minor_groove_error_indicator(pd): # pd.minor_groove_error_indicatiors_CheckBox.setWhatsThis(""" """) # pd.minor_groove_error_minimum_angle_SpinBox.setWhatsThis(""" """) # pd.minor_groove_error_maximum_angle_SpinBox.setWhatsThis(""" """) # pd.minor_groove_error_color_ColorComboBox.setWhatsThis(""" """) pd.minor_groove_error_reset_PushButton.setWhatsThis( """Resets all minor groove error indicator settings to their default values.
""") return def setWhatsThis_Base_orientation_indicator(pd): # pd.base_orientation_indicatiors_CheckBox.setWhatsThis(""" """) # pd.plane_normal_ComboBox.setWhatsThis(""" """) # pd.indicators_color_ColorComboBox.setWhatsThis(""" """) # pd.inverse_indicators_color_ColorComboBox.setWhatsThis(""" """) # pd.enable_inverse_indicatiors_CheckBox.setWhatsThis(""" """) # pd.angle_threshold_DoubleSpinBox.setWhatsThis(""" """) # pd.terminal_base_distance_SpinBox.setWhatsThis(""" """) return def setWhatsThis_Adjust(pd): pd.physics_engine_choice_ComboBox.setWhatsThis( """This selects which physics engine to use as the default.""") #pd.enable_electrostatics_CheckBox.setWhatsThis(""" """) pd.watch_motion_in_realtime_CheckBox.setWhatsThis("""Watch motion in real time
Enables/disables realtime graphical updates during adjust operations when using Adjust All or Adjust Selection
""") #pd.animation_detail_level_RadioButtonList.setWhatsThis(""" """) pd.constant_animation_update_RadioButton.setWhatsThis( """Update as fast as possibleUpdate every 2 seconds, or faster (up to 20x/sec)if it doesn't slow adjustments by more than 20%
""") pd.update_every_RadioButton.setWhatsThis("""Update every n units.Specify how often to update the model during the adjustment. This allows the user to monitor results during adjustments.
""") pd.update_rate_SpinBox.setWhatsThis("""Update every n units.Specify how often to update the model during the adjustment. This allows the user to monitor results during adjustments.
""") # pd.animation_detail_level_ComboBox.setWhatsThis(""" """) pd.endRMS_DoubleSpinBox.setWhatsThis("""EndRMSContinue until this RMS force is reached.
""") pd.endmax_DoubleSpinBox.setWhatsThis("""EndMaxContinue until no interaction exceeds this force.
""") pd.cutoverRMS_DoubleSpinBox.setWhatsThis("""CutoverRMSUse steepest descent until this RMS force is reached.
""") pd.cutoverMax_DoubleSpinBox.setWhatsThis("""CutoverMaxUse steepest descent until no interaction exceeds this force.
""") return def setWhatsThis_Plugins(pd): for plugin in PLUGIN_TEXT: pd.checkboxes[plugin].setWhatsThis(PLUGIN_TEXT[plugin]["checkbox"]) pd.choosers[plugin].lineEdit.setWhatsThis( PLUGIN_TEXT[plugin]["chooser"]) pd.choosers[plugin].browseButton.setWhatsThis( PLUGIN_TEXT[plugin]["button"]) return def setWhatsThis_Undo(pd): pd.undo_restore_view_CheckBox.setWhatsThis( """Restore view when undoing structural changes
When checked, the current view is stored along with each structural change on the undo stack. The view is then restored when the user undoes a structural change.
Structural changes include any operation that modifies the model. Examples include adding, deleting or moving an atom, chunk or jig.
Selection (picking/unpicking) and view changes are examples of operations that do not modify the model (i.e. are not structural changes).
""") pd.undo_automatic_checkpoints_CheckBox.setWhatsThis( """Automatic checkpoints
Specifies whether automatic checkpointing is enabled/disabled during program startup only. It does not enable/disable automatic checkpointing when the program is running.
Automatic checkpointing can be enabled/disabled by the user at any time from Edit > Automatic checkpointing. When enabled, the program maintains the undo stack automatically. When disabled, the user is required to manually set undo checkpoints using the set checkpoint button in the Edit Toolbar/Menu.
Automatic checkpointing can impact program performance. By disabling automatic checkpointing, the program will run faster.
Remember to you must set your own undo checkpoints manually when automatic checkpointing is disabled.
""") _text = """
Undo stack memory limit
This is the maximum amount of system memory that will be assigned to handle the undo stack.
""" pd.undo_stack_memory_limit_SpinBox.setWhatsThis(_text) pd.undo_stack_memory_limit_SpinBox.labelWidget.setWhatsThis(_text) return def setWhatsThis_Window(pd): #pd.current_width_SpinBox.setWhatsThis(""" """) #pd.current_height_SpinBox.setWhatsThis(""" """) pd.current_size_save_Button.setWhatsThis( """Saves the main window's current position and size for the next time the program starts.
""") pd.restore_saved_size_Button.setWhatsThis( """Restores the main window's current position from the last time the program was closed
""") #pd.saved_size_label.setWhatsThis(""" """) #pd.save_size_on_quit_CheckBox.setWhatsThis(""" """) _text = """Format prefix and suffix text the delimits the part name in the caption in window border.
""" pd.caption_prefix_LineEdit.setWhatsThis(_text) pd.caption_suffix_LineEdit.setWhatsThis(_text) # pd.caption_prefix_LineEdit.labelWidget.setWhatsThis(_text) # pd.caption_suffix_LineEdit.labelWidget.setWhatsThis(_text) pd.display_full_path_CheckBox.setWhatsThis(_text) pd.caption_prefix_save_ToolButton.setWhatsThis( """Saves the current caption prefix.""") pd.caption_suffix_save_ToolButton.setWhatsThis( """Saves the current caption suffix.""") #pd.use_custom_font_CheckBox.setWhatsThis(""" """) #pd.custom_fontComboBox.setWhatsThis(""" """) #pd.custom_font_size_SpinBox.setWhatsThis(""" """) #pd.make_default_font_PushButton.setWhatsThis(""" """) return def setWhatsThis_Reports(pd): # pd.history_include_message_serial_CheckBox.setWhatsThis(""" """) # pd.history_include_message_timestamp_CheckBox.setWhatsThis(""" """) return def setWhatsThis_Tooltips(pd): # pd.atom_chunk_information_CheckBox.setWhatsThis(""" """) # pd.atom_mass_information_CheckBox.setWhatsThis(""" """) # pd.atom_XYZ_coordinates_CheckBox.setWhatsThis(""" """) # pd.atom_XYZ_distance_CheckBox.setWhatsThis(""" """) # pd.atom_include_vdw_CheckBox.setWhatsThis(""" """) # pd.atom_distance_precision_SpinBox.setWhatsThis(""" """) # pd.atom_angle_precision_SpinBox.setWhatsThis(""" """) # pd.bond_distance_between_atoms_CheckBox.setWhatsThis(""" """) # pd.bond_chunk_information_CheckBox.setWhatsThis(""" """) return