# precompiled python files *.pyc *.pyo # vim and editor leftovers .*.swp .*.swo .*~ *~ # osx leftovers .DS_Store # compiled object files and shared/linked libraries *.o *.a *.lo *.la *.dll *.so # automake-generated files Makefile.in cad/Makefile.in cad/doc/Makefile.in cad/partlib/Makefile.in cad/plugins/DNA/Makefile.in cad/plugins/HDF5_SimResults/Makefile.in cad/plugins/HDF5_SimResults/src/Makefile.in cad/plugins/HDF5_SimResults/src/Testing/Makefile.in cad/plugins/Makefile.in cad/src/Makefile.in sim/Makefile.in sim/src/Makefile.in acinclude.m4 aclocal.m4 autom4te.cache config.guess config.h.in config.sub configure depcomp install-sh ltmain.sh missing Makefile cad/Makefile cad/doc/Makefile cad/partlib/Makefile cad/plugins/DNA/Makefile cad/plugins/HDF5_SimResults/Makefile cad/plugins/HDF5_SimResults/src/Makefile cad/plugins/HDF5_SimResults/src/Testing/Makefile cad/plugins/Makefile sim/Makefile config.h config.h.in~ config.log config.status libtool stamp-h1 .deps .libs # these are presently a file in the repo # but it gets overwritten by automake cad/src/Makefile sim/src/Makefile # other generated files config.log cad/plugins/HDF5_SimResults/Makefile cad/plugins/HDF5_SimResults/config.h cad/plugins/HDF5_SimResults/config.log cad/plugins/HDF5_SimResults/config.status cad/plugins/HDF5_SimResults/libtool cad/plugins/HDF5_SimResults/src/.deps/ cad/plugins/HDF5_SimResults/src/.libs/ cad/plugins/HDF5_SimResults/src/Makefile cad/plugins/HDF5_SimResults/src/Testing/.deps/ cad/plugins/HDF5_SimResults/src/Testing/Makefile cad/plugins/HDF5_SimResults/src/libHDF5_SimResults.la cad/plugins/HDF5_SimResults/src/libHDF5_SimResults_la-HDF5_SimResults.lo cad/plugins/HDF5_SimResults/src/libHDF5_SimResults_la-SimResultsDataStore.lo cad/plugins/HDF5_SimResults/stamp-h1 sim/src/sim.c sim/src/bends.gen sim/src/bonds.gen sim/src/simulator sim/src/version.h cad/src/atombase.c cad/src/samevals.c *.rej .*.rej # run-time generated log cad/src/ne1log.txt